Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47155 * 353.79584 * 3 2 1 5 5 C 1.36935 * 120.00370 * 275.88400 * 4 3 2 6 6 H 1.07996 * 120.00239 * 175.81871 * 5 4 3 7 7 C 1.38816 * 120.00025 * 355.82981 * 5 4 3 8 8 N 1.31615 * 119.99904 * 33.97732 * 7 5 4 9 9 Si 1.86802 * 119.99805 * 213.98783 * 7 5 4 10 10 H 1.48496 * 109.47346 * 84.99250 * 9 7 5 11 11 H 1.48497 * 109.46790 * 204.99437 * 9 7 5 12 12 H 1.48502 * 109.47058 * 324.98954 * 9 7 5 13 13 C 1.46503 * 119.99699 * 95.88601 * 4 3 2 14 14 C 1.52998 * 109.47098 * 269.99924 * 13 4 3 15 15 H 1.09002 * 109.47370 * 305.00148 * 14 13 4 16 16 O 1.42903 * 109.47262 * 65.00357 * 14 13 4 17 17 C 1.53009 * 109.47050 * 184.99928 * 14 13 4 18 18 O 1.42897 * 109.47029 * 174.99998 * 17 14 13 19 19 C 1.35898 * 116.99884 * 180.02562 * 18 17 14 20 20 C 1.38756 * 120.05716 * 359.72907 * 19 18 17 21 21 C 1.38120 * 119.94082 * 179.70010 * 20 19 18 22 22 C 1.38278 * 120.06006 * 0.59431 * 21 20 19 23 23 C 1.38252 * 120.11080 * 359.68097 * 22 21 20 24 24 C 1.50702 * 119.97018 * 179.97438 * 23 22 21 25 25 C 1.38159 * 120.05291 * 0.02562 * 23 22 21 26 26 H 4.40638 * 5.51369 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47287 * 233.80289 * 3 2 1 28 28 H 1.08998 * 109.47490 * 113.79920 * 3 2 1 29 29 H 0.97000 * 119.99824 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47041 * 150.00259 * 13 4 3 31 31 H 1.09002 * 109.47147 * 30.00398 * 13 4 3 32 32 H 0.96700 * 113.99858 * 59.99079 * 16 14 13 33 33 H 1.08995 * 109.47153 * 295.00510 * 17 14 13 34 34 H 1.08998 * 109.46825 * 55.00356 * 17 14 13 35 35 H 1.08001 * 120.02386 * 359.97431 * 20 19 18 36 36 H 1.08003 * 119.96722 * 180.29847 * 21 20 19 37 37 H 1.08004 * 119.95116 * 179.70001 * 22 21 20 38 38 H 1.08997 * 109.46732 * 270.01890 * 24 23 22 39 39 H 1.08996 * 109.47371 * 30.02173 * 24 23 22 40 40 H 1.09002 * 109.46578 * 150.02457 * 24 23 22 41 41 H 1.08002 * 120.02644 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3723 0.1493 5 6 3.2488 -1.9268 1.3961 6 1 3.5445 -2.9600 1.5026 7 6 2.9840 -1.1610 2.5232 8 7 2.0522 -0.2323 2.4837 9 14 3.9504 -1.4484 4.0958 10 1 5.2190 -0.6782 4.0450 11 1 3.1453 -1.0000 5.2603 12 1 4.2549 -2.8954 4.2322 13 6 3.5021 -2.1519 -1.0355 14 6 2.2773 -2.9154 -1.5433 15 1 1.8655 -3.5203 -0.7354 16 8 1.2896 -1.9860 -1.9936 17 6 2.6881 -3.8249 -2.7031 18 8 1.5715 -4.6230 -3.1010 19 6 1.7689 -5.4923 -4.1268 20 6 3.0103 -5.5715 -4.7416 21 6 3.2099 -6.4602 -5.7798 22 6 2.1707 -7.2620 -6.2148 23 6 0.9312 -7.1810 -5.6076 24 6 -0.1993 -8.0559 -6.0846 25 6 0.7281 -6.2979 -4.5647 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0091 0.6077 0.8293 28 1 3.0092 0.4155 -0.9402 29 1 1.8669 0.3026 3.2714 30 1 4.2892 -2.8596 -0.7751 31 1 3.8608 -1.4803 -1.8155 32 1 1.5876 -1.4133 -2.7135 33 1 3.0169 -3.2149 -3.5444 34 1 3.5036 -4.4741 -2.3845 35 1 3.8208 -4.9418 -4.4056 36 1 4.1774 -6.5256 -6.2555 37 1 2.3274 -7.9529 -7.0300 38 1 -0.7521 -7.5395 -6.8693 39 1 0.2043 -8.9888 -6.4781 40 1 -0.8679 -8.2720 -5.2512 41 1 -0.2402 -6.2353 -4.0904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281402364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = 3.961192 kcal Electronic energy + Delta-G solvation = -22393.820286 eV Core-core repulsion = 19048.147574 eV Total energy + Delta-G solvation = -3345.672712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14744 -39.32485 -38.21660 -36.76044 -33.41290 -33.39853 -33.23315 -31.74817 -30.41012 -28.03333 -27.85623 -27.08669 -24.02354 -23.48911 -22.32448 -21.81314 -19.43478 -18.71775 -18.18478 -17.69974 -17.33558 -16.86678 -16.70936 -16.36410 -15.77013 -15.59875 -15.22505 -15.01849 -14.85710 -14.38539 -14.29219 -14.17432 -13.69935 -13.43809 -13.18733 -12.94523 -12.91472 -12.71885 -12.43859 -12.34579 -12.19274 -12.05084 -11.87098 -11.79922 -11.65601 -11.13284 -10.60960 -10.48970 -10.06686 -9.73662 -9.12049 -9.02795 -7.91184 -5.11295 0.37082 0.50920 1.48072 1.52301 1.58286 2.17800 2.45597 2.63691 2.78998 2.81132 3.18532 3.62425 3.68968 3.90477 3.93540 4.03833 4.12820 4.17655 4.24221 4.33911 4.42675 4.43861 4.49380 4.54391 4.59597 4.82904 4.88119 4.91481 4.98595 5.02492 5.20809 5.24899 5.39977 5.47961 5.50684 5.65579 5.66172 5.79130 5.91000 6.22784 6.51172 7.00671 7.09728 7.56421 7.85878 8.24836 9.12518 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.003291 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.381636 B = 8505.050447 C = 8911.904712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.103 4.103 3 C 0.266 3.734 4 N -0.593 5.593 5 C -0.280 4.280 6 H 0.078 0.922 7 C -0.037 4.037 8 N -0.899 5.899 9 Si 0.945 3.055 10 H -0.283 1.283 11 H -0.305 1.305 12 H -0.276 1.276 13 C 0.126 3.874 14 C 0.094 3.906 15 H 0.057 0.943 16 O -0.556 6.556 17 C 0.040 3.960 18 O -0.333 6.333 19 C 0.112 3.888 20 C -0.226 4.226 21 C -0.078 4.078 22 C -0.167 4.167 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.183 4.183 26 H 0.204 0.796 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.247 0.753 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.372 0.628 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -11.016 -19.428 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.106 4.106 3 C 0.141 3.859 4 N -0.312 5.312 5 C -0.408 4.408 6 H 0.096 0.904 7 C -0.234 4.234 8 N -0.543 5.543 9 Si 0.774 3.226 10 H -0.209 1.209 11 H -0.233 1.233 12 H -0.201 1.201 13 C -0.001 4.001 14 C 0.031 3.969 15 H 0.075 0.925 16 O -0.360 6.360 17 C -0.036 4.036 18 O -0.247 6.247 19 C 0.066 3.934 20 C -0.245 4.245 21 C -0.096 4.096 22 C -0.185 4.185 23 C -0.054 4.054 24 C -0.170 4.170 25 C -0.202 4.202 26 H 0.221 0.779 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.219 0.781 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.669 -11.167 -18.699 21.943 hybrid contribution 0.135 0.273 1.126 1.166 sum 2.804 -10.895 -17.573 20.866 Atomic orbital electron populations 1.24646 0.96170 1.04313 1.07866 1.24404 0.95722 0.96555 0.93913 1.18086 0.82716 0.86396 0.98714 1.44481 1.73513 1.11096 1.02143 1.19418 1.41058 0.96727 0.83641 0.90446 1.25370 0.98564 0.99191 1.00259 1.70495 1.27696 1.26606 1.29466 0.85619 0.79402 0.77762 0.79828 1.20935 1.23252 1.20082 1.21636 0.94055 0.95129 0.89302 1.22721 0.92063 0.88966 0.93125 0.92494 1.86767 1.40885 1.51712 1.56683 1.23679 0.88061 0.93537 0.98322 1.86168 1.39566 1.50564 1.48407 1.19427 0.94954 0.90643 0.88339 1.21497 0.96471 1.05006 1.01526 1.21307 1.00132 0.93467 0.94659 1.21294 0.92444 1.02370 1.02413 1.20059 0.96685 0.95141 0.93521 1.20866 0.95487 0.98712 1.01911 1.20526 0.98527 0.99882 1.01255 0.77915 0.91446 0.91108 0.94310 0.90839 0.89815 0.78057 0.89591 0.90197 0.84256 0.83057 0.83340 0.89948 0.89512 0.91430 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.08 19.05 74.32 1.42 -13.66 16 2 C -0.10 -5.12 9.80 31.12 0.31 -4.82 16 3 C 0.27 12.33 5.40 84.57 0.46 12.78 16 4 N -0.59 -27.47 2.47 -712.55 -1.76 -29.23 16 5 C -0.28 -14.78 9.60 84.03 0.81 -13.97 16 6 H 0.08 4.04 8.02 -2.91 -0.02 4.01 16 7 C -0.04 -2.00 4.87 84.86 0.41 -1.59 16 8 N -0.90 -51.85 9.35 21.65 0.20 -51.65 16 9 Si 0.94 44.13 29.67 68.60 2.04 46.16 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.13 4.35 5.36 86.38 0.46 4.82 16 14 C 0.09 3.31 3.49 30.60 0.11 3.42 16 15 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 16 O -0.56 -21.06 10.94 -144.34 -1.58 -22.64 16 17 C 0.04 1.09 4.37 71.99 0.31 1.40 16 18 O -0.33 -10.93 10.10 -87.76 -0.89 -11.82 16 19 C 0.11 3.16 6.69 22.51 0.15 3.31 16 20 C -0.23 -5.11 9.04 22.37 0.20 -4.91 16 21 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 22 C -0.17 -2.93 9.70 22.28 0.22 -2.71 16 23 C -0.05 -1.10 5.88 -19.88 -0.12 -1.21 16 24 C -0.11 -1.57 10.01 71.24 0.71 -0.86 16 25 C -0.18 -4.83 9.64 22.36 0.22 -4.61 16 26 H 0.20 8.57 7.80 -4.43 -0.03 8.54 16 27 H 0.07 3.52 6.15 -2.39 -0.01 3.50 16 28 H 0.07 2.70 7.83 -2.39 -0.02 2.68 16 29 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 31 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 32 H 0.37 10.92 9.05 -74.06 -0.67 10.25 16 33 H 0.09 1.87 7.65 -2.39 -0.02 1.85 16 34 H 0.08 1.93 7.67 -2.39 -0.02 1.91 16 35 H 0.14 2.66 6.30 -2.91 -0.02 2.64 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 41 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -69.89 348.08 4.24 -65.64 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.35 Total: 27.34 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.89 Total: -23.80 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -1.56 Total: -80.88 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -2.47 Total: -34.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.04 Total: 46.16 kcal Total: -69.89 4.24 -65.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281402364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.603 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds