Wall clock time and date at job start Tue Mar 31 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47178 * 111.65432 * 3 2 1 5 5 C 1.36932 * 119.99964 * 263.92338 * 4 3 2 6 6 H 1.08000 * 120.00098 * 199.38435 * 5 4 3 7 7 C 1.38815 * 120.00329 * 19.38498 * 5 4 3 8 8 N 1.31614 * 119.99678 * 22.28834 * 7 5 4 9 9 Si 1.86798 * 120.00157 * 202.29287 * 7 5 4 10 10 H 1.48495 * 109.47246 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46952 * 119.99523 * 9 7 5 12 12 H 1.48492 * 109.47245 * 239.99682 * 9 7 5 13 13 C 1.46505 * 120.00063 * 83.91989 * 4 3 2 14 14 C 1.52998 * 109.46783 * 90.00495 * 13 4 3 15 15 H 1.08998 * 109.47809 * 60.00267 * 14 13 4 16 16 O 1.42900 * 109.46944 * 299.99470 * 14 13 4 17 17 C 1.53003 * 109.46809 * 180.02562 * 14 13 4 18 18 O 1.42907 * 109.46999 * 184.99948 * 17 14 13 19 19 C 1.35898 * 116.99987 * 179.97438 * 18 17 14 20 20 C 1.38760 * 120.05402 * 359.72696 * 19 18 17 21 21 C 1.38123 * 119.94062 * 179.70028 * 20 19 18 22 22 C 1.38288 * 120.05681 * 0.59388 * 21 20 19 23 23 C 1.38241 * 120.11144 * 359.68145 * 22 21 20 24 24 C 1.38164 * 120.05447 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.02867 * 179.97438 * 24 23 22 26 26 H 4.40639 * 5.51494 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47773 * 351.64996 * 3 2 1 28 28 H 1.09004 * 109.46884 * 231.64884 * 3 2 1 29 29 H 0.96997 * 120.00234 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47246 * 330.00007 * 13 4 3 31 31 H 1.08999 * 109.47008 * 210.00157 * 13 4 3 32 32 H 0.96698 * 114.00096 * 300.00377 * 16 14 13 33 33 H 1.09004 * 109.46932 * 304.99179 * 17 14 13 34 34 H 1.08999 * 109.47687 * 64.99257 * 17 14 13 35 35 H 1.08000 * 120.02953 * 359.96548 * 20 19 18 36 36 H 1.08003 * 119.97023 * 180.29136 * 21 20 19 37 37 H 1.08004 * 119.94633 * 179.69562 * 22 21 20 38 38 H 1.07999 * 119.97276 * 180.02562 * 23 22 21 39 39 H 1.08999 * 109.47659 * 270.02700 * 25 24 23 40 40 H 1.09000 * 109.47560 * 30.02395 * 25 24 23 41 41 H 1.09005 * 109.47651 * 150.02065 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.5105 -1.2837 5 6 3.4810 -0.3625 -2.2799 6 1 4.1192 -0.0348 -3.0871 7 6 3.0124 -1.6689 -2.2523 8 7 1.9281 -1.9647 -1.5676 9 14 3.9210 -3.0070 -3.1868 10 1 5.1002 -2.4192 -3.8715 11 1 4.3715 -4.0557 -2.2367 12 1 3.0132 -3.6100 -4.1955 13 6 3.2509 1.9546 -1.5017 14 6 4.6440 2.4233 -1.0769 15 1 5.3981 1.9044 -1.6686 16 8 4.8423 2.1331 0.3082 17 6 4.7658 3.9315 -1.3040 18 8 6.1019 4.3499 -1.0177 19 6 6.3809 5.6711 -1.1710 20 6 5.3904 6.5460 -1.5938 21 6 5.6749 7.8894 -1.7429 22 6 6.9487 8.3606 -1.4829 23 6 7.9388 7.4900 -1.0670 24 6 7.6577 6.1463 -0.9106 25 6 8.7375 5.1977 -0.4577 26 1 -1.0501 0.0001 0.0002 27 1 3.0098 -1.0159 0.1492 28 1 3.0089 0.6385 0.8060 29 1 1.6008 -2.8776 -1.5479 30 1 2.4967 2.4735 -0.9101 31 1 3.0995 2.1759 -2.5582 32 1 4.2053 2.5628 0.8952 33 1 4.5271 4.1631 -2.3421 34 1 4.0722 4.4552 -0.6462 35 1 4.3967 6.1776 -1.8021 36 1 4.9030 8.5716 -2.0675 37 1 7.1705 9.4106 -1.6048 38 1 8.9327 7.8605 -0.8642 39 1 9.2606 4.8005 -1.3276 40 1 9.4443 5.7292 0.1796 41 1 8.2890 4.3773 0.1026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281406504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:38 Heat of formation + Delta-G solvation = 15.333243 kcal Electronic energy + Delta-G solvation = -22436.672109 eV Core-core repulsion = 19091.492526 eV Total energy + Delta-G solvation = -3345.179583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.25313 -38.07086 -36.81636 -35.14326 -32.88397 -31.58506 -31.53574 -30.30793 -29.38219 -26.85487 -26.25459 -25.64114 -22.96107 -21.71489 -21.41841 -20.69193 -18.01243 -17.50297 -16.77320 -16.32517 -16.02835 -15.70033 -15.24970 -14.95497 -14.57658 -14.45528 -13.89055 -13.55173 -13.43871 -13.20573 -13.03796 -12.91483 -12.46452 -12.31540 -12.03212 -11.54154 -11.41565 -11.27518 -11.05229 -10.94571 -10.91183 -10.71686 -10.44373 -10.26759 -10.00132 -9.84185 -8.95706 -8.92552 -8.70791 -8.45546 -8.13087 -6.97969 -5.81174 -3.24010 1.22277 1.38158 3.20889 3.36845 3.45400 3.47327 3.67234 4.14404 4.36686 4.51865 4.69539 4.72515 4.80538 4.93767 5.04210 5.18335 5.21430 5.23956 5.33878 5.44776 5.53991 5.60191 5.68858 5.72210 5.78273 5.80261 5.86806 5.93533 6.17577 6.27404 6.37680 6.43720 6.45223 6.60529 6.74354 6.76091 7.23301 7.41021 7.46205 7.73072 8.11293 8.26105 9.07145 9.17761 9.73688 10.19792 11.21856 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.003470 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.004873 B = 8067.577497 C = 8690.550178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.098 4.098 3 C 0.271 3.729 4 N -0.574 5.574 5 C -0.270 4.270 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.125 3.875 14 C 0.089 3.911 15 H 0.106 0.894 16 O -0.544 6.544 17 C 0.028 3.972 18 O -0.299 6.299 19 C 0.134 3.866 20 C -0.209 4.209 21 C -0.087 4.087 22 C -0.163 4.163 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.106 4.106 26 H 0.190 0.810 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.254 0.746 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.362 0.638 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 17.702 2.340 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.100 4.100 3 C 0.146 3.854 4 N -0.293 5.293 5 C -0.399 4.399 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.219 1.219 13 C -0.004 4.004 14 C 0.027 3.973 15 H 0.124 0.876 16 O -0.347 6.347 17 C -0.049 4.049 18 O -0.212 6.212 19 C 0.088 3.912 20 C -0.228 4.228 21 C -0.105 4.105 22 C -0.181 4.181 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.163 4.163 26 H 0.207 0.793 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.080 16.973 2.152 18.921 hybrid contribution -0.764 -0.308 -0.635 1.040 sum 7.317 16.665 1.518 18.263 Atomic orbital electron populations 1.24191 0.95345 1.07083 1.05498 1.24416 0.95429 0.94713 0.95490 1.17745 0.82348 0.99453 0.85874 1.43775 1.74475 0.99104 1.11898 1.19185 1.24747 0.91479 1.04503 0.90856 1.24917 0.96036 0.98714 0.99596 1.70144 1.19331 1.18593 1.44596 0.86290 0.79529 0.82292 0.79048 1.20228 1.21438 1.21900 1.21265 0.92298 0.86978 0.99816 1.22982 1.01804 0.88826 0.83698 0.87575 1.86662 1.57564 1.74346 1.16123 1.23820 0.81646 0.98600 1.00798 1.86203 1.31517 1.20556 1.82915 1.18985 0.93444 0.83692 0.95097 1.21304 0.99598 0.94503 1.07363 1.20911 0.96736 0.94703 0.98181 1.20986 0.93557 0.99665 1.03901 1.20863 0.99217 0.91896 0.98429 1.19318 0.93136 0.94827 1.04865 1.20615 0.96085 0.98380 1.01180 0.79318 0.89125 0.93812 0.93549 0.93868 0.92192 0.79288 0.91426 0.92164 0.85444 0.86072 0.86213 0.85689 0.91471 0.91984 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.82 19.25 29.55 0.57 -6.25 16 2 C -0.10 -2.35 11.50 -37.13 -0.43 -2.77 16 3 C 0.27 6.33 5.20 -6.83 -0.04 6.29 16 4 N -0.57 -13.54 2.41 -176.57 -0.43 -13.97 16 5 C -0.27 -7.13 9.63 -15.06 -0.14 -7.28 16 6 H 0.07 1.90 7.92 -52.49 -0.42 1.48 16 7 C 0.01 0.19 4.82 -17.43 -0.08 0.11 16 8 N -0.88 -25.00 9.61 55.49 0.53 -24.47 16 9 Si 0.90 21.45 29.61 -169.99 -5.03 16.42 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.12 2.33 5.37 -4.04 -0.02 2.31 16 14 C 0.09 1.48 3.52 -26.73 -0.09 1.39 16 15 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 16 O -0.54 -9.30 11.93 -40.10 -0.48 -9.78 16 17 C 0.03 0.37 4.37 37.16 0.16 0.54 16 18 O -0.30 -4.48 9.15 -24.29 -0.22 -4.70 16 19 C 0.13 1.82 6.66 -39.22 -0.26 1.56 16 20 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 21 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 22 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 23 C -0.09 -0.89 9.70 -39.61 -0.38 -1.28 16 24 C -0.12 -1.49 5.89 -104.48 -0.62 -2.11 16 25 C -0.11 -1.18 9.79 36.00 0.35 -0.82 16 26 H 0.19 3.58 7.80 -54.08 -0.42 3.16 16 27 H 0.09 2.36 6.59 -51.93 -0.34 2.02 16 28 H 0.04 0.89 6.80 -51.93 -0.35 0.54 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 32 H 0.36 4.90 8.82 45.56 0.40 5.30 16 33 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 34 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -31.16 348.90 -7.66 -38.81 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.15 Total: 6.90 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.14 Total: -14.47 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.11 Total: -38.44 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.70 Total: -14.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.16 -7.66 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281406504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.147 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds