Wall clock time and date at job start Tue Mar 31 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47178 * 111.65432 * 3 2 1 5 5 C 1.36932 * 119.99964 * 263.92338 * 4 3 2 6 6 H 1.08000 * 120.00098 * 199.38435 * 5 4 3 7 7 C 1.38815 * 120.00329 * 19.38498 * 5 4 3 8 8 N 1.31614 * 119.99678 * 22.28834 * 7 5 4 9 9 Si 1.86798 * 120.00157 * 202.29287 * 7 5 4 10 10 H 1.48495 * 109.47246 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46952 * 119.99523 * 9 7 5 12 12 H 1.48492 * 109.47245 * 239.99682 * 9 7 5 13 13 C 1.46505 * 120.00063 * 83.91989 * 4 3 2 14 14 C 1.52998 * 109.46783 * 90.00495 * 13 4 3 15 15 H 1.08998 * 109.47809 * 60.00267 * 14 13 4 16 16 O 1.42900 * 109.46944 * 299.99470 * 14 13 4 17 17 C 1.53003 * 109.46809 * 180.02562 * 14 13 4 18 18 O 1.42907 * 109.46999 * 184.99948 * 17 14 13 19 19 C 1.35898 * 116.99987 * 179.97438 * 18 17 14 20 20 C 1.38760 * 120.05402 * 359.72696 * 19 18 17 21 21 C 1.38123 * 119.94062 * 179.70028 * 20 19 18 22 22 C 1.38288 * 120.05681 * 0.59388 * 21 20 19 23 23 C 1.38241 * 120.11144 * 359.68145 * 22 21 20 24 24 C 1.38164 * 120.05447 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.02867 * 179.97438 * 24 23 22 26 26 H 4.40639 * 5.51494 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47773 * 351.64996 * 3 2 1 28 28 H 1.09004 * 109.46884 * 231.64884 * 3 2 1 29 29 H 0.96997 * 120.00234 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47246 * 330.00007 * 13 4 3 31 31 H 1.08999 * 109.47008 * 210.00157 * 13 4 3 32 32 H 0.96698 * 114.00096 * 300.00377 * 16 14 13 33 33 H 1.09004 * 109.46932 * 304.99179 * 17 14 13 34 34 H 1.08999 * 109.47687 * 64.99257 * 17 14 13 35 35 H 1.08000 * 120.02953 * 359.96548 * 20 19 18 36 36 H 1.08003 * 119.97023 * 180.29136 * 21 20 19 37 37 H 1.08004 * 119.94633 * 179.69562 * 22 21 20 38 38 H 1.07999 * 119.97276 * 180.02562 * 23 22 21 39 39 H 1.08999 * 109.47659 * 270.02700 * 25 24 23 40 40 H 1.09000 * 109.47560 * 30.02395 * 25 24 23 41 41 H 1.09005 * 109.47651 * 150.02065 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.5105 -1.2837 5 6 3.4810 -0.3625 -2.2799 6 1 4.1192 -0.0348 -3.0871 7 6 3.0124 -1.6689 -2.2523 8 7 1.9281 -1.9647 -1.5676 9 14 3.9210 -3.0070 -3.1868 10 1 5.1002 -2.4192 -3.8715 11 1 4.3715 -4.0557 -2.2367 12 1 3.0132 -3.6100 -4.1955 13 6 3.2509 1.9546 -1.5017 14 6 4.6440 2.4233 -1.0769 15 1 5.3981 1.9044 -1.6686 16 8 4.8423 2.1331 0.3082 17 6 4.7658 3.9315 -1.3040 18 8 6.1019 4.3499 -1.0177 19 6 6.3809 5.6711 -1.1710 20 6 5.3904 6.5460 -1.5938 21 6 5.6749 7.8894 -1.7429 22 6 6.9487 8.3606 -1.4829 23 6 7.9388 7.4900 -1.0670 24 6 7.6577 6.1463 -0.9106 25 6 8.7375 5.1977 -0.4577 26 1 -1.0501 0.0001 0.0002 27 1 3.0098 -1.0159 0.1492 28 1 3.0089 0.6385 0.8060 29 1 1.6008 -2.8776 -1.5479 30 1 2.4967 2.4735 -0.9101 31 1 3.0995 2.1759 -2.5582 32 1 4.2053 2.5628 0.8952 33 1 4.5271 4.1631 -2.3421 34 1 4.0722 4.4552 -0.6462 35 1 4.3967 6.1776 -1.8021 36 1 4.9030 8.5716 -2.0675 37 1 7.1705 9.4106 -1.6048 38 1 8.9327 7.8605 -0.8642 39 1 9.2606 4.8005 -1.3276 40 1 9.4443 5.7292 0.1796 41 1 8.2890 4.3773 0.1026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281406504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:37 Heat of formation + Delta-G solvation = -3.009556 kcal Electronic energy + Delta-G solvation = -22437.467513 eV Core-core repulsion = 19091.492526 eV Total energy + Delta-G solvation = -3345.974986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19333 -39.30096 -38.06406 -36.75649 -33.73297 -33.48375 -33.21476 -31.46271 -30.57723 -28.03852 -27.70856 -27.20218 -24.33425 -22.77420 -22.63197 -21.93746 -19.35824 -19.00951 -18.29156 -17.62006 -17.32911 -16.80252 -16.56557 -16.31237 -15.84177 -15.58385 -15.46005 -15.05624 -14.91669 -14.26958 -14.21315 -13.98342 -13.78298 -13.40834 -13.14115 -13.12923 -12.90976 -12.77477 -12.42347 -12.23119 -12.19766 -12.14121 -11.91311 -11.88057 -11.63612 -11.23519 -10.78100 -10.57222 -10.32904 -9.74265 -9.02887 -8.87099 -7.84407 -5.26972 0.40384 0.53205 1.44689 1.49227 1.57675 2.13002 2.39238 2.52819 2.59863 2.84537 3.27582 3.57283 3.68110 3.88094 3.94234 4.03096 4.11774 4.13003 4.25139 4.28163 4.42638 4.44183 4.45391 4.56311 4.73497 4.80203 4.81999 4.94098 5.00462 5.01235 5.20183 5.32359 5.34095 5.45790 5.56059 5.62975 5.63944 5.68606 5.93804 6.28201 6.51058 6.94373 7.09521 7.36700 7.82038 8.24380 9.16341 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.003470 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.004873 B = 8067.577497 C = 8690.550178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.135 4.135 3 C 0.276 3.724 4 N -0.590 5.590 5 C -0.273 4.273 6 H 0.072 0.928 7 C -0.042 4.042 8 N -0.909 5.909 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.296 1.296 13 C 0.126 3.874 14 C 0.105 3.895 15 H 0.078 0.922 16 O -0.561 6.561 17 C 0.038 3.962 18 O -0.322 6.322 19 C 0.104 3.896 20 C -0.219 4.219 21 C -0.092 4.092 22 C -0.161 4.161 23 C -0.088 4.088 24 C -0.141 4.141 25 C -0.103 4.103 26 H 0.221 0.779 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.246 0.754 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.378 0.622 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.778 20.242 2.188 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.138 4.138 3 C 0.151 3.849 4 N -0.309 5.309 5 C -0.402 4.402 6 H 0.090 0.910 7 C -0.239 4.239 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.220 1.220 12 H -0.223 1.223 13 C -0.001 4.001 14 C 0.042 3.958 15 H 0.096 0.904 16 O -0.367 6.367 17 C -0.038 4.038 18 O -0.235 6.235 19 C 0.058 3.942 20 C -0.237 4.237 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.106 4.106 24 C -0.142 4.142 25 C -0.160 4.160 26 H 0.238 0.762 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.351 19.559 2.003 21.362 hybrid contribution -0.821 -0.948 -0.564 1.375 sum 7.530 18.611 1.438 20.129 Atomic orbital electron populations 1.25002 0.96344 1.05587 1.04183 1.24753 0.96199 0.96077 0.96775 1.17614 0.82457 0.98152 0.86669 1.43929 1.74743 1.00821 1.11427 1.19451 1.23850 0.92262 1.04682 0.91015 1.25534 0.96856 1.00413 1.01122 1.70283 1.20578 1.18135 1.46377 0.85399 0.78531 0.79894 0.77712 1.19477 1.21967 1.22305 1.21398 0.93929 0.84509 1.00264 1.22523 0.99253 0.90798 0.83177 0.90423 1.86618 1.58454 1.75069 1.16545 1.23586 0.82011 0.96249 1.01921 1.86133 1.31821 1.21916 1.83666 1.19276 0.94629 0.83205 0.97045 1.21499 0.99653 0.95178 1.07416 1.21279 0.97800 0.94412 0.97506 1.21401 0.93093 1.01046 1.02312 1.21203 1.00670 0.91067 0.97647 1.19621 0.93053 0.96001 1.05501 1.20588 0.96232 0.97873 1.01259 0.76188 0.92595 0.91168 0.94411 0.92037 0.92206 0.77429 0.90399 0.90146 0.84695 0.83629 0.83359 0.83219 0.91484 0.89833 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.86 19.25 74.32 1.43 -11.43 16 2 C -0.14 -6.47 11.50 31.12 0.36 -6.11 16 3 C 0.28 13.03 5.20 84.57 0.44 13.47 16 4 N -0.59 -27.98 2.41 -712.56 -1.72 -29.70 16 5 C -0.27 -14.56 9.63 84.04 0.81 -13.75 16 6 H 0.07 3.76 7.92 -2.91 -0.02 3.74 16 7 C -0.04 -2.33 4.82 84.86 0.41 -1.92 16 8 N -0.91 -52.35 9.61 21.65 0.21 -52.14 16 9 Si 0.96 44.95 29.61 68.60 2.03 46.98 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 13 C 0.13 4.63 5.37 86.38 0.46 5.09 16 14 C 0.10 3.44 3.52 30.59 0.11 3.55 16 15 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 16 O -0.56 -19.00 11.93 -144.32 -1.72 -20.72 16 17 C 0.04 1.00 4.37 71.98 0.31 1.32 16 18 O -0.32 -9.58 9.15 -87.75 -0.80 -10.39 16 19 C 0.10 2.74 6.66 22.51 0.15 2.89 16 20 C -0.22 -4.85 9.04 22.37 0.20 -4.64 16 21 C -0.09 -1.65 10.04 22.25 0.22 -1.43 16 22 C -0.16 -2.64 10.04 22.28 0.22 -2.42 16 23 C -0.09 -1.61 9.70 22.25 0.22 -1.39 16 24 C -0.14 -3.33 5.89 -19.77 -0.12 -3.45 16 25 C -0.10 -2.24 9.79 71.23 0.70 -1.54 16 26 H 0.22 7.82 7.80 -4.41 -0.03 7.79 16 27 H 0.06 3.01 6.59 -2.39 -0.02 3.00 16 28 H 0.07 2.84 6.80 -2.38 -0.02 2.83 16 29 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.06 2.03 8.07 -2.39 -0.02 2.02 16 31 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 32 H 0.38 9.81 8.82 -74.06 -0.65 9.16 16 33 H 0.08 1.85 7.65 -2.38 -0.02 1.84 16 34 H 0.08 1.76 7.68 -2.39 -0.02 1.75 16 35 H 0.14 2.64 6.30 -2.91 -0.02 2.62 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 41 H 0.05 1.36 7.53 -2.38 -0.02 1.34 16 Total: -1.00 -67.59 348.90 4.29 -63.29 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.37 Total: 24.45 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 5.93 Total: -21.78 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.51 Total: -81.84 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -2.52 Total: -31.11 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.59 4.29 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281406504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.282 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds