Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47244 * 299.99525 * 3 2 1 6 6 H 1.48500 * 109.47029 * 59.99943 * 3 2 1 7 7 C 1.37882 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99640 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46839 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00231 * 262.13127 * 10 9 7 12 12 C 1.53004 * 109.47384 * 265.45859 * 11 10 9 13 13 C 1.52995 * 117.49895 * 243.12574 * 12 11 10 14 14 C 1.52999 * 117.49917 * 174.46530 * 12 11 10 15 15 C 1.34778 * 119.99488 * 82.13484 * 10 9 7 16 16 O 1.21615 * 119.99673 * 182.01120 * 15 10 9 17 17 C 1.47372 * 120.00471 * 2.01252 * 15 10 9 18 18 C 1.47030 * 127.18987 * 350.66185 * 17 15 10 19 19 C 1.34179 * 105.94977 * 180.30052 * 18 17 15 20 20 O 1.34213 * 109.12910 * 359.76053 * 19 18 17 21 21 C 1.33653 * 110.90434 * 359.97438 * 20 19 18 22 22 C 1.50703 * 125.80071 * 179.97438 * 21 20 19 23 23 C 1.53005 * 117.49709 * 60.02364 * 22 21 20 24 24 C 1.52998 * 60.03438 * 252.50129 * 23 22 21 25 25 H 0.97006 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47581 * 59.99984 * 9 7 2 27 27 H 1.08997 * 109.47713 * 299.99636 * 9 7 2 28 28 H 1.09004 * 109.47188 * 25.46269 * 11 10 9 29 29 H 1.09005 * 109.47240 * 145.46040 * 11 10 9 30 30 H 1.09001 * 115.54551 * 28.79418 * 12 11 10 31 31 H 1.09002 * 117.49895 * 359.97438 * 13 12 11 32 32 H 1.09003 * 117.49578 * 145.02011 * 13 12 11 33 33 H 1.08996 * 117.49711 * 214.98026 * 14 12 11 34 34 H 1.09000 * 117.49683 * 359.97438 * 14 12 11 35 35 H 1.07991 * 127.02257 * 0.07983 * 18 17 15 36 36 H 1.08004 * 125.43377 * 179.79851 * 19 18 17 37 37 H 1.08996 * 115.56304 * 205.71787 * 22 21 20 38 38 H 1.09000 * 117.50002 * 0.02562 * 23 22 21 39 39 H 1.09008 * 117.49619 * 144.99617 * 23 22 21 40 40 H 1.08999 * 117.49582 * 107.50385 * 24 23 22 41 41 H 1.09002 * 117.49997 * 252.52376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.5469 -4.2824 -1.2562 12 6 1.6542 -5.5113 -1.4403 13 6 2.3354 -6.8808 -1.4728 14 6 1.7691 -6.2766 -2.7602 15 6 2.7621 -4.0211 1.1568 16 8 3.5799 -4.9212 1.1521 17 6 2.3827 -3.3769 2.4268 18 6 1.5679 -2.1654 2.6002 19 6 1.4947 -1.9565 3.9236 20 8 2.1774 -2.9212 4.5596 21 6 2.7119 -3.7814 3.6873 22 6 3.5438 -4.9885 4.0366 23 6 2.8954 -6.0645 4.9100 24 6 3.9744 -5.1521 5.4965 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5568 0.8903 28 1 2.3944 -3.5946 -2.0880 29 1 3.5914 -4.5930 -1.2284 30 1 0.6689 -5.4500 -0.9781 31 1 3.4196 -6.9064 -1.3634 32 1 1.7981 -7.7207 -1.0324 33 1 0.8595 -6.7192 -3.1661 34 1 2.4804 -5.9043 -3.4975 35 1 1.1226 -1.5643 1.8213 36 1 0.9696 -1.1423 4.4009 37 1 4.2410 -5.3181 3.2664 38 1 1.8671 -5.8996 5.2316 39 1 3.1658 -7.1022 4.7139 40 1 3.6560 -4.3866 6.2042 41 1 4.9548 -5.5892 5.6860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281406740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = 46.138736 kcal Electronic energy + Delta-G solvation = -23535.022344 eV Core-core repulsion = 20191.178587 eV Total energy + Delta-G solvation = -3343.843756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91526 -38.92023 -36.96780 -36.71102 -34.91676 -32.65664 -32.01162 -29.06091 -27.97139 -26.41649 -23.40482 -22.74981 -22.33343 -22.10471 -21.80612 -20.56815 -19.67528 -18.16732 -16.88606 -16.39395 -15.98075 -15.69190 -15.41847 -15.10084 -14.55998 -14.42731 -14.30505 -13.92206 -13.27119 -12.93242 -12.66679 -12.39028 -12.05842 -11.91909 -11.63588 -11.48364 -11.31755 -11.24642 -11.01576 -10.94149 -10.68633 -10.32546 -10.24478 -10.21787 -9.90820 -9.74339 -9.54835 -9.04836 -8.98076 -8.58180 -7.92907 -7.60250 -6.26456 -4.32175 1.94420 2.93787 3.17895 3.27143 3.32782 3.36077 3.89655 3.94940 4.20295 4.22842 4.33310 4.72547 5.00403 5.05521 5.10410 5.12945 5.24388 5.32528 5.42634 5.60756 5.68327 5.81000 5.82382 5.86416 5.91184 6.11939 6.16577 6.17235 6.19610 6.22338 6.38421 6.45534 6.59899 6.63422 6.68876 6.79266 7.18784 7.40455 7.58048 7.70685 7.76963 7.99562 8.35888 8.76120 9.10276 9.33274 10.78051 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.007837 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.891742 B = 3571.743837 C = 5829.453720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.217 3.783 10 N -0.587 5.587 11 C 0.153 3.847 12 C -0.159 4.159 13 C -0.172 4.172 14 C -0.182 4.182 15 C 0.592 3.408 16 O -0.573 6.573 17 C -0.216 4.216 18 C -0.163 4.163 19 C -0.086 4.086 20 O -0.186 6.186 21 C 0.074 3.926 22 C -0.074 4.074 23 C -0.166 4.166 24 C -0.176 4.176 25 H 0.267 0.733 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.219 0.781 36 H 0.199 0.801 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -8.359 4.287 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.098 3.902 10 N -0.316 5.316 11 C 0.029 3.971 12 C -0.179 4.179 13 C -0.209 4.209 14 C -0.220 4.220 15 C 0.382 3.618 16 O -0.456 6.456 17 C -0.220 4.220 18 C -0.181 4.181 19 C -0.150 4.150 20 O -0.084 6.084 21 C 0.021 3.979 22 C -0.092 4.092 23 C -0.203 4.203 24 C -0.212 4.212 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.216 0.784 37 H 0.167 0.833 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.457 -8.676 4.559 10.105 hybrid contribution 0.159 1.315 -0.257 1.350 sum 2.616 -7.361 4.302 8.918 Atomic orbital electron populations 1.69936 1.05805 1.27459 1.49680 1.24942 0.94918 0.99240 0.94903 0.86483 0.80366 0.83209 0.77869 1.19577 1.20757 1.20659 1.21551 0.93974 0.90334 1.50926 0.91840 1.20080 0.87977 0.82660 0.99498 1.47921 1.44485 1.33930 1.05240 1.20847 0.97596 0.91881 0.86782 1.22795 1.01187 0.93390 1.00498 1.22938 1.00555 0.96638 1.00747 1.22923 1.02942 1.04863 0.91240 1.17171 0.80197 0.81354 0.83040 1.90608 1.35382 1.32299 1.87320 1.21129 1.07534 1.00464 0.92909 1.24935 0.98837 0.96766 0.97514 1.23906 1.03282 0.94988 0.92834 1.83581 1.54529 1.32276 1.37991 1.21446 0.97340 0.92091 0.86990 1.20741 1.01020 0.91920 0.95481 1.23008 0.98436 0.95880 1.02962 1.23026 0.99620 1.03042 0.95561 0.92331 0.94483 0.92769 0.90050 0.90962 0.87982 0.88737 0.89582 0.89232 0.88954 0.76497 0.78402 0.83273 0.88686 0.88049 0.88353 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.15 13.21 55.43 0.73 -22.42 16 2 C 0.06 1.59 4.76 -17.82 -0.08 1.50 16 3 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.53 -13.36 7.12 -34.44 -0.25 -13.61 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.22 5.12 4.68 -5.19 -0.02 5.09 16 10 N -0.59 -12.75 2.49 -176.34 -0.44 -13.19 16 11 C 0.15 2.87 5.62 -4.04 -0.02 2.84 16 12 C -0.16 -2.63 5.98 -90.62 -0.54 -3.17 16 13 C -0.17 -2.52 10.18 -26.70 -0.27 -2.79 16 14 C -0.18 -2.44 10.25 -26.69 -0.27 -2.71 16 15 C 0.59 13.30 7.56 -12.54 -0.09 13.20 16 16 O -0.57 -13.07 14.56 5.26 0.08 -13.00 16 17 C -0.22 -4.68 6.08 -103.28 -0.63 -5.31 16 18 C -0.16 -3.50 8.23 -37.45 -0.31 -3.80 16 19 C -0.09 -1.58 12.03 29.30 0.35 -1.22 16 20 O -0.19 -3.43 10.23 7.66 0.08 -3.35 16 21 C 0.07 1.43 6.85 -34.97 -0.24 1.19 16 22 C -0.07 -1.20 5.71 -91.73 -0.52 -1.73 16 23 C -0.17 -2.18 10.23 -26.73 -0.27 -2.45 16 24 C -0.18 -2.23 10.17 -26.69 -0.27 -2.51 16 25 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.04 0.91 8.01 -51.93 -0.42 0.49 16 27 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 28 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 29 H 0.07 1.37 7.27 -51.93 -0.38 0.99 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.22 5.15 3.13 -52.49 -0.16 4.99 16 36 H 0.20 2.91 8.06 -52.48 -0.42 2.49 16 37 H 0.15 2.60 6.55 -51.93 -0.34 2.26 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 40 H 0.10 1.25 7.97 -51.93 -0.41 0.84 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -27.73 341.71 -8.59 -36.32 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.72 Total: 10.91 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.45 Total: -15.46 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.29 Total: -35.61 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.15 Total: -16.35 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.73 -8.59 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281406740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.463 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds