Wall clock time and date at job start Tue Mar 31 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 120.00518 * 2 1 4 4 C 1.37968 * 119.95701 * 180.11386 * 3 2 1 5 5 C 1.39150 * 120.21288 * 0.02562 * 4 3 2 6 6 C 1.38376 * 119.69581 * 359.82705 * 5 4 3 7 7 C 1.38103 * 120.00606 * 180.02562 * 2 1 3 8 8 C 1.50766 * 121.40352 * 180.50455 * 6 5 4 9 9 C 1.53070 * 109.70815 * 342.15251 * 8 6 5 10 10 C 1.53414 * 108.29931 * 48.16111 * 9 8 6 11 11 H 1.08996 * 109.68574 * 55.08679 * 10 9 8 12 12 C 1.50698 * 109.68198 * 175.61111 * 10 9 8 13 13 O 1.21283 * 120.00472 * 114.48096 * 12 10 9 14 14 N 1.34777 * 119.99538 * 294.47434 * 12 10 9 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47115 * 89.99974 * 21 19 17 23 23 H 1.48509 * 109.46780 * 210.00159 * 21 19 17 24 24 H 1.48497 * 109.46888 * 329.99916 * 21 19 17 25 25 O 1.35845 * 118.50281 * 179.77741 * 5 4 3 26 26 H 1.08999 * 109.47835 * 90.00160 * 1 2 3 27 27 H 1.09006 * 109.47186 * 210.00713 * 1 2 3 28 28 H 1.09004 * 109.47291 * 329.99619 * 1 2 3 29 29 H 1.08000 * 120.02369 * 0.12920 * 3 2 1 30 30 H 1.08003 * 119.89834 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.84436 * 0.02562 * 7 2 1 32 32 H 1.08998 * 109.44112 * 102.19490 * 8 6 5 33 33 H 1.09001 * 109.43308 * 222.07036 * 8 6 5 34 34 H 1.09000 * 109.67083 * 288.47351 * 9 8 6 35 35 H 1.08991 * 109.72781 * 167.87747 * 9 8 6 36 36 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 37 37 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 38 38 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 39 39 H 1.08995 * 109.46638 * 300.00121 * 16 15 14 40 40 H 1.09006 * 109.47139 * 60.00254 * 16 15 14 41 41 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1976 0.0000 4 6 3.5782 1.1964 -0.0024 5 6 4.2774 -0.0067 -0.0053 6 6 3.5826 -1.2033 -0.0022 7 6 2.1976 -1.1959 -0.0005 8 6 4.3010 -2.5288 0.0061 9 6 5.7544 -2.3310 -0.4317 10 6 6.3394 -1.1533 0.3585 11 1 6.2198 -1.3325 1.4270 12 6 7.8022 -0.9987 0.0305 13 8 8.1927 -0.0058 -0.5462 14 7 8.6763 -1.9638 0.3782 15 6 10.0974 -1.8162 0.0540 16 6 10.8636 -3.0446 0.5489 17 6 12.3255 -2.8925 0.2160 18 1 12.6732 -2.0084 -0.2976 19 6 13.2190 -3.8822 0.5672 20 7 12.7955 -4.9590 1.1922 21 14 15.0311 -3.6940 0.1538 22 1 15.7264 -3.0130 1.2753 23 1 15.6319 -5.0352 -0.0598 24 1 15.1752 -2.8843 -1.0826 25 8 5.6353 0.0327 -0.0122 26 1 -0.3635 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5139 29 1 1.6590 2.1331 0.0021 30 1 4.1174 2.1322 -0.0028 31 1 1.6552 -2.1298 -0.0014 32 1 4.2797 -2.9467 1.0126 33 1 3.8053 -3.2143 -0.6812 34 1 5.7895 -2.1111 -1.4987 35 1 6.3276 -3.2342 -0.2231 36 1 8.3640 -2.7580 0.8392 37 1 10.2162 -1.7246 -1.0257 38 1 10.4901 -0.9230 0.5398 39 1 10.7448 -3.1362 1.6285 40 1 10.4710 -3.9379 0.0630 41 1 13.4242 -5.6550 1.4395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281641508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:50 Heat of formation + Delta-G solvation = -72.594817 kcal Electronic energy + Delta-G solvation = -21985.739715 eV Core-core repulsion = 18636.747286 eV Total energy + Delta-G solvation = -3348.992430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05425 -39.24654 -37.66758 -34.99088 -34.51940 -32.92069 -32.42065 -30.93925 -29.59630 -27.69105 -25.97079 -24.53955 -23.60226 -22.55019 -21.18842 -20.53886 -19.66391 -18.04843 -17.33411 -16.62842 -16.32068 -15.44910 -15.18725 -15.03181 -14.69282 -14.50737 -14.47357 -14.10458 -13.97031 -13.57426 -13.43299 -13.24661 -12.80529 -12.68493 -12.51040 -12.32854 -11.84891 -11.53813 -11.31960 -11.24526 -11.10382 -11.04412 -10.68139 -10.59797 -10.38019 -9.81506 -9.49294 -9.22154 -8.98888 -8.62775 -8.41700 -8.16308 -6.12853 -4.15788 1.11542 1.21410 2.69877 2.81751 3.27722 3.33970 3.38233 3.48592 3.82905 4.32149 4.38303 4.49682 4.50060 4.67548 4.71349 4.81951 4.96827 5.01824 5.12152 5.23330 5.24419 5.29724 5.34805 5.44362 5.56114 5.59697 5.73542 5.79727 5.88016 6.08381 6.23447 6.25783 6.28598 6.39404 6.60129 6.67008 6.79037 7.30269 7.46864 7.56042 7.84670 7.87551 8.22934 8.50825 8.90004 9.49325 10.98676 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.048975 B = 0.002553 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.585434 B =10965.646868 C =11416.115901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.143 4.143 5 C 0.132 3.868 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.076 4.076 9 C -0.150 4.150 10 C 0.075 3.925 11 H 0.097 0.903 12 C 0.513 3.487 13 O -0.526 6.526 14 N -0.716 5.716 15 C 0.123 3.877 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 O -0.288 6.288 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.646 5.221 -0.328 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.161 4.161 5 C 0.086 3.914 6 C -0.160 4.160 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.188 4.188 10 C 0.015 3.985 11 H 0.114 0.886 12 C 0.297 3.703 13 O -0.402 6.402 14 N -0.368 5.368 15 C 0.001 3.999 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 O -0.201 6.201 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.138 5.937 -0.730 24.868 hybrid contribution 0.848 -0.608 0.128 1.051 sum -23.290 5.329 -0.603 23.899 Atomic orbital electron populations 1.20704 0.91130 1.02538 1.02080 1.19766 0.96101 0.93032 1.03544 1.20793 0.92914 0.97758 0.99155 1.20613 0.93784 0.96528 1.05204 1.18780 0.82252 0.93468 0.96865 1.19841 0.94500 0.94258 1.07393 1.20738 0.92453 0.97752 0.99275 1.20494 0.94011 0.93999 1.02761 1.22224 0.96585 0.98339 1.01642 1.22310 0.90947 0.85206 1.00054 0.88578 1.19848 0.86391 0.83992 0.80103 1.90721 1.79311 1.29444 1.40693 1.46203 1.09571 1.21493 1.59494 1.21794 0.76444 1.01530 1.00127 1.19333 0.94831 0.91311 0.96985 1.21040 0.91919 1.04840 1.38286 0.92196 1.24996 0.99247 0.95105 0.94936 1.69948 1.34993 1.08304 1.40038 0.86502 0.84655 0.77415 0.78936 1.20533 1.21154 1.19708 1.86088 1.15085 1.35472 1.83410 0.91486 0.91786 0.91725 0.85503 0.85031 0.85878 0.89990 0.89516 0.89677 0.88678 0.76788 0.92321 0.92307 0.95853 0.95853 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.12 -1.12 5.88 -104.65 -0.62 -1.74 16 3 C -0.09 -0.84 9.70 -39.66 -0.38 -1.23 16 4 C -0.14 -1.67 9.94 -39.34 -0.39 -2.06 16 5 C 0.13 1.73 6.47 -39.19 -0.25 1.48 16 6 C -0.16 -1.75 5.75 -104.44 -0.60 -2.35 16 7 C -0.08 -0.79 9.32 -39.53 -0.37 -1.16 16 8 C -0.08 -0.68 5.86 -27.81 -0.16 -0.85 16 9 C -0.15 -1.62 5.46 -26.48 -0.14 -1.76 16 10 C 0.07 1.01 3.21 -27.67 -0.09 0.92 16 11 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 12 C 0.51 8.89 7.19 -10.99 -0.08 8.81 16 13 O -0.53 -11.47 16.52 -14.21 -0.23 -11.70 16 14 N -0.72 -12.06 5.50 -60.29 -0.33 -12.40 16 15 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 O -0.29 -4.46 9.47 -39.01 -0.37 -4.83 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 36 H 0.40 5.56 8.27 -40.82 -0.34 5.22 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -32.78 345.53 -9.52 -42.30 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.20 Total: 0.85 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.30 Total: -10.60 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.40 Total: -37.41 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.60 Total: -16.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.78 -9.52 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281641508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.290 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds