Wall clock time and date at job start Tue Mar 31 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 120.00518 * 2 1 4 4 C 1.37968 * 119.95701 * 180.11386 * 3 2 1 5 5 C 1.39150 * 120.21288 * 0.02562 * 4 3 2 6 6 C 1.38376 * 119.69581 * 359.82705 * 5 4 3 7 7 C 1.38103 * 120.00606 * 180.02562 * 2 1 3 8 8 C 1.50766 * 121.40352 * 180.50455 * 6 5 4 9 9 C 1.53070 * 109.70815 * 342.15251 * 8 6 5 10 10 C 1.53414 * 108.29931 * 48.16111 * 9 8 6 11 11 H 1.08996 * 109.68574 * 55.08679 * 10 9 8 12 12 C 1.50698 * 109.68198 * 175.61111 * 10 9 8 13 13 O 1.21283 * 120.00472 * 114.48096 * 12 10 9 14 14 N 1.34777 * 119.99538 * 294.47434 * 12 10 9 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47115 * 89.99974 * 21 19 17 23 23 H 1.48509 * 109.46780 * 210.00159 * 21 19 17 24 24 H 1.48497 * 109.46888 * 329.99916 * 21 19 17 25 25 O 1.35845 * 118.50281 * 179.77741 * 5 4 3 26 26 H 1.08999 * 109.47835 * 90.00160 * 1 2 3 27 27 H 1.09006 * 109.47186 * 210.00713 * 1 2 3 28 28 H 1.09004 * 109.47291 * 329.99619 * 1 2 3 29 29 H 1.08000 * 120.02369 * 0.12920 * 3 2 1 30 30 H 1.08003 * 119.89834 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.84436 * 0.02562 * 7 2 1 32 32 H 1.08998 * 109.44112 * 102.19490 * 8 6 5 33 33 H 1.09001 * 109.43308 * 222.07036 * 8 6 5 34 34 H 1.09000 * 109.67083 * 288.47351 * 9 8 6 35 35 H 1.08991 * 109.72781 * 167.87747 * 9 8 6 36 36 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 37 37 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 38 38 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 39 39 H 1.08995 * 109.46638 * 300.00121 * 16 15 14 40 40 H 1.09006 * 109.47139 * 60.00254 * 16 15 14 41 41 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1976 0.0000 4 6 3.5782 1.1964 -0.0024 5 6 4.2774 -0.0067 -0.0053 6 6 3.5826 -1.2033 -0.0022 7 6 2.1976 -1.1959 -0.0005 8 6 4.3010 -2.5288 0.0061 9 6 5.7544 -2.3310 -0.4317 10 6 6.3394 -1.1533 0.3585 11 1 6.2198 -1.3325 1.4270 12 6 7.8022 -0.9987 0.0305 13 8 8.1927 -0.0058 -0.5462 14 7 8.6763 -1.9638 0.3782 15 6 10.0974 -1.8162 0.0540 16 6 10.8636 -3.0446 0.5489 17 6 12.3255 -2.8925 0.2160 18 1 12.6732 -2.0084 -0.2976 19 6 13.2190 -3.8822 0.5672 20 7 12.7955 -4.9590 1.1922 21 14 15.0311 -3.6940 0.1538 22 1 15.7264 -3.0130 1.2753 23 1 15.6319 -5.0352 -0.0598 24 1 15.1752 -2.8843 -1.0826 25 8 5.6353 0.0327 -0.0122 26 1 -0.3635 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5139 29 1 1.6590 2.1331 0.0021 30 1 4.1174 2.1322 -0.0028 31 1 1.6552 -2.1298 -0.0014 32 1 4.2797 -2.9467 1.0126 33 1 3.8053 -3.2143 -0.6812 34 1 5.7895 -2.1111 -1.4987 35 1 6.3276 -3.2342 -0.2231 36 1 8.3640 -2.7580 0.8392 37 1 10.2162 -1.7246 -1.0257 38 1 10.4901 -0.9230 0.5398 39 1 10.7448 -3.1362 1.6285 40 1 10.4710 -3.9379 0.0630 41 1 13.4242 -5.6550 1.4395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281641508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:49 Heat of formation + Delta-G solvation = -91.921068 kcal Electronic energy + Delta-G solvation = -21986.577765 eV Core-core repulsion = 18636.747286 eV Total energy + Delta-G solvation = -3349.830479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02690 -40.51927 -38.63136 -36.66318 -35.47510 -34.78814 -33.23875 -32.07162 -31.09610 -28.62088 -27.05578 -26.12633 -24.46034 -23.38311 -22.96673 -21.88496 -20.56056 -19.03046 -18.64378 -18.41162 -17.46890 -16.77055 -16.53110 -16.39713 -16.07398 -15.70163 -15.38496 -15.09116 -14.90012 -14.71120 -14.46712 -14.30281 -14.18268 -13.84644 -13.45096 -13.24902 -13.14206 -12.95476 -12.61779 -12.53335 -12.32263 -12.25537 -12.07106 -11.90167 -11.68934 -11.46396 -11.41313 -10.81725 -10.61182 -10.13270 -9.73814 -8.98433 -8.24843 -6.34778 0.35640 0.41776 1.41213 1.41704 1.42135 1.52365 1.58520 2.39277 2.60499 2.78681 3.10139 3.45060 3.50673 3.71286 3.79443 3.86021 4.04625 4.19288 4.26148 4.40196 4.45985 4.46262 4.53498 4.59722 4.74584 4.82656 4.86085 4.91783 4.95962 5.02199 5.14478 5.18707 5.19721 5.36321 5.45428 5.46392 5.57363 5.68692 5.77077 5.88075 6.14991 6.36715 6.53416 6.77915 7.11959 7.34360 8.86762 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.048975 B = 0.002553 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.585434 B =10965.646868 C =11416.115901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.162 4.162 5 C 0.096 3.904 6 C -0.164 4.164 7 C -0.088 4.088 8 C -0.071 4.071 9 C -0.145 4.145 10 C 0.080 3.920 11 H 0.121 0.879 12 C 0.513 3.487 13 O -0.577 6.577 14 N -0.704 5.704 15 C 0.141 3.859 16 C 0.024 3.976 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.268 1.268 25 O -0.322 6.322 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.415 0.585 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.542 4.219 -0.065 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.181 4.181 5 C 0.052 3.948 6 C -0.165 4.165 7 C -0.106 4.106 8 C -0.107 4.107 9 C -0.183 4.183 10 C 0.021 3.979 11 H 0.139 0.861 12 C 0.299 3.701 13 O -0.456 6.456 14 N -0.357 5.357 15 C 0.017 3.983 16 C -0.014 4.014 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.192 1.192 25 O -0.236 6.236 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.252 0.748 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.068 4.912 -0.451 26.531 hybrid contribution 1.338 -0.256 0.046 1.363 sum -24.730 4.656 -0.405 25.168 Atomic orbital electron populations 1.20765 0.88846 1.03727 1.02972 1.20198 0.97789 0.92645 1.01672 1.21084 0.92052 0.99288 0.98545 1.20794 0.94938 0.96169 1.06199 1.19093 0.81341 0.94952 0.99448 1.20123 0.95368 0.94267 1.06761 1.21093 0.91907 0.99112 0.98446 1.20571 0.92257 0.93427 1.04490 1.22240 0.98274 0.97607 1.00175 1.22298 0.87870 0.86005 1.01764 0.86133 1.20568 0.88103 0.82769 0.78629 1.90691 1.80496 1.31436 1.42978 1.45931 1.08037 1.22317 1.59406 1.21298 0.78431 0.99444 0.99088 1.19137 0.94066 0.92124 0.96043 1.21455 0.93739 1.04944 1.38467 0.92463 1.25832 1.03733 0.94762 0.94721 1.70040 1.36566 1.08975 1.40784 0.85475 0.79257 0.77624 0.78875 1.19832 1.20445 1.19235 1.86018 1.16735 1.36494 1.84344 0.90602 0.90501 0.90738 0.83348 0.85791 0.83180 0.87873 0.87348 0.91385 0.86778 0.74813 0.93378 0.93485 0.96976 0.96788 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.26 16 2 C -0.12 -1.92 5.88 -19.88 -0.12 -2.04 16 3 C -0.09 -1.65 9.70 22.22 0.22 -1.43 16 4 C -0.16 -3.88 9.94 22.42 0.22 -3.65 16 5 C 0.10 2.54 6.47 22.52 0.15 2.68 16 6 C -0.16 -3.34 5.75 -19.75 -0.11 -3.45 16 7 C -0.09 -1.41 9.32 22.30 0.21 -1.21 16 8 C -0.07 -1.08 5.86 29.89 0.18 -0.91 16 9 C -0.15 -2.92 5.46 30.76 0.17 -2.76 16 10 C 0.08 2.14 3.21 29.99 0.10 2.23 16 11 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 12 C 0.51 18.10 7.19 87.66 0.63 18.73 16 13 O -0.58 -26.19 16.52 15.86 0.26 -25.93 16 14 N -0.70 -23.81 5.50 -463.05 -2.55 -26.36 16 15 C 0.14 5.99 5.61 86.38 0.48 6.48 16 16 C 0.02 1.17 5.09 29.85 0.15 1.32 16 17 C -0.55 -30.28 9.11 25.60 0.23 -30.04 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 21 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 O -0.32 -10.28 9.47 -72.91 -0.69 -10.97 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.53 8.09 -2.38 -0.02 0.52 16 28 H 0.07 0.56 8.09 -2.38 -0.02 0.54 16 29 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.82 7.91 -2.39 -0.02 1.80 16 36 H 0.42 11.25 8.27 -92.71 -0.77 10.48 16 37 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -72.31 345.53 3.27 -69.04 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.26 Total: 15.21 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 3.68 Total: -13.38 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.26 Total: -79.35 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.43 Total: -36.90 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.31 3.27 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281641508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.879 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds