Wall clock time and date at job start Tue Mar 31 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38290 * 120.00366 * 2 1 4 4 C 1.37974 * 119.95022 * 179.97438 * 3 2 1 5 5 C 1.39145 * 120.21768 * 0.02562 * 4 3 2 6 6 C 1.38371 * 119.69579 * 0.15012 * 5 4 3 7 7 C 1.38098 * 120.00538 * 180.02562 * 2 1 3 8 8 C 1.50771 * 121.40729 * 179.76985 * 6 5 4 9 9 C 1.53068 * 109.68905 * 17.65516 * 8 6 5 10 10 C 1.53419 * 108.30139 * 311.85715 * 9 8 6 11 11 H 1.08996 * 109.68501 * 304.98803 * 10 9 8 12 12 C 1.50700 * 109.68540 * 184.46138 * 10 9 8 13 13 O 1.21284 * 119.99701 * 244.99726 * 12 10 9 14 14 N 1.34774 * 119.99956 * 64.99952 * 12 10 9 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47337 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.46997 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 O 1.35845 * 118.49072 * 180.21427 * 5 4 3 26 26 H 1.09006 * 109.47258 * 89.99998 * 1 2 3 27 27 H 1.09001 * 109.47669 * 209.99632 * 1 2 3 28 28 H 1.09002 * 109.47242 * 329.99845 * 1 2 3 29 29 H 1.07996 * 120.02300 * 359.95306 * 3 2 1 30 30 H 1.08001 * 119.88986 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.84535 * 359.97438 * 7 2 1 32 32 H 1.08997 * 109.43765 * 257.58460 * 8 6 5 33 33 H 1.09005 * 109.43273 * 137.72090 * 8 6 5 34 34 H 1.08992 * 109.70157 * 192.15185 * 9 8 6 35 35 H 1.09002 * 109.72869 * 71.57138 * 9 8 6 36 36 H 0.96999 * 120.00050 * 359.97438 * 14 12 10 37 37 H 1.09005 * 109.47136 * 59.99929 * 15 14 12 38 38 H 1.09002 * 109.47352 * 299.99897 * 15 14 12 39 39 H 1.09005 * 109.46767 * 60.00068 * 16 15 14 40 40 H 1.09002 * 109.47113 * 300.00408 * 16 15 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1976 0.0000 4 6 3.5783 1.1963 0.0005 5 6 4.2774 -0.0067 0.0005 6 6 3.5827 -1.2034 -0.0031 7 6 2.1976 -1.1959 -0.0005 8 6 4.3010 -2.5289 -0.0085 9 6 5.7545 -2.3296 0.4282 10 6 6.3388 -1.1536 -0.3650 11 1 6.2175 -1.3346 -1.4330 12 6 7.8021 -0.9988 -0.0394 13 8 8.1950 -0.0006 0.5264 14 7 8.6739 -1.9695 -0.3771 15 6 10.0964 -1.8187 -0.0611 16 6 10.8604 -3.0519 -0.5475 17 6 12.3238 -2.8965 -0.2230 18 1 12.6739 -2.0073 0.2803 19 6 13.2158 -3.8895 -0.5685 20 7 14.4929 -3.7541 -0.2849 21 14 12.6103 -5.4270 -1.4396 22 1 12.2405 -6.4536 -0.4322 23 1 11.4220 -5.0929 -2.2650 24 1 13.6873 -5.9570 -2.3140 25 8 5.6353 0.0329 0.0055 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6590 2.1331 -0.0008 30 1 4.1173 2.1321 0.0010 31 1 1.6552 -2.1298 -0.0005 32 1 4.2787 -2.9496 -1.0137 33 1 3.8057 -3.2126 0.6811 34 1 6.3276 -3.2333 0.2211 35 1 5.7912 -2.1077 1.4947 36 1 8.3595 -2.7679 -0.8294 37 1 10.2203 -1.7169 1.0171 38 1 10.4867 -0.9301 -0.5572 39 1 10.7366 -3.1541 -1.6257 40 1 10.4701 -3.9403 -0.0511 41 1 15.1203 -4.4529 -0.5276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281641512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:52 Heat of formation + Delta-G solvation = -68.069285 kcal Electronic energy + Delta-G solvation = -22049.793523 eV Core-core repulsion = 18700.997335 eV Total energy + Delta-G solvation = -3348.796188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11343 -39.32760 -37.72870 -35.11588 -34.58864 -32.89279 -32.45756 -31.05303 -29.99524 -27.81277 -26.07990 -24.60403 -23.64923 -22.58724 -20.93880 -20.65380 -19.71323 -18.10779 -17.38072 -16.94576 -16.54925 -15.54687 -15.23778 -15.12778 -14.73550 -14.58649 -14.24385 -14.12985 -14.04798 -13.69070 -13.49275 -13.35824 -12.94034 -12.75531 -12.64691 -12.55230 -11.90094 -11.58944 -11.53493 -11.38192 -11.26652 -11.12187 -10.66124 -10.45039 -10.30701 -10.00356 -9.52701 -9.33001 -9.03106 -8.71262 -8.61629 -8.20800 -6.14165 -4.14698 1.07326 1.17284 2.62856 2.73460 3.22141 3.29600 3.30975 3.43978 3.74355 4.25831 4.34280 4.42691 4.44035 4.60641 4.67354 4.74808 4.92142 4.94654 5.06852 5.17947 5.18432 5.24710 5.30248 5.40182 5.49259 5.55520 5.68616 5.73705 5.83304 6.01578 6.05320 6.14113 6.19137 6.35648 6.49509 6.55640 6.62000 7.05669 7.17203 7.26260 7.61887 7.75200 8.37355 8.43625 8.90159 9.45433 10.98798 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.002760 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.310767 B =10140.996329 C =10713.943285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.142 4.142 5 C 0.132 3.868 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.075 4.075 9 C -0.150 4.150 10 C 0.075 3.925 11 H 0.097 0.903 12 C 0.514 3.486 13 O -0.521 6.521 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.021 4.021 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.266 1.266 24 H -0.287 1.287 25 O -0.287 6.287 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.825 2.623 -1.733 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.161 4.161 5 C 0.086 3.914 6 C -0.160 4.160 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.188 4.188 10 C 0.015 3.985 11 H 0.114 0.886 12 C 0.298 3.702 13 O -0.396 6.396 14 N -0.372 5.372 15 C 0.009 3.991 16 C -0.059 4.059 17 C -0.562 4.562 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.191 1.191 24 H -0.212 1.212 25 O -0.200 6.200 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.191 3.432 -1.276 28.428 hybrid contribution -0.285 -1.461 -0.723 1.655 sum -28.477 1.971 -2.000 28.615 Atomic orbital electron populations 1.20707 0.91108 1.02582 1.02081 1.19771 0.96122 0.93027 1.03469 1.20802 0.92915 0.97783 0.99078 1.20618 0.93791 0.96542 1.05128 1.18772 0.82204 0.93477 0.96935 1.19830 0.94506 0.94217 1.07497 1.20737 0.92442 0.97761 0.99288 1.20491 0.93982 0.94047 1.02720 1.22229 0.96607 0.98269 1.01710 1.22300 0.90896 0.85270 1.00047 0.88566 1.19835 0.86410 0.83992 0.80010 1.90739 1.79163 1.29105 1.40630 1.46191 1.09563 1.20974 1.60488 1.21578 0.76057 1.00730 1.00692 1.19800 0.96728 0.92740 0.96656 1.20903 0.89394 1.06418 1.39522 0.90572 1.25011 0.94741 0.98295 0.95271 1.69904 1.02158 1.34338 1.47120 0.86745 0.78777 0.83439 0.80060 1.20221 1.19084 1.21248 1.86094 1.15128 1.35329 1.83452 0.91480 0.91774 0.91691 0.85460 0.84986 0.85882 0.90042 0.89507 0.88807 0.89593 0.76980 0.91706 0.91672 0.95924 0.96363 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.12 -1.08 5.88 -104.65 -0.62 -1.69 16 3 C -0.09 -0.81 9.70 -39.66 -0.38 -1.20 16 4 C -0.14 -1.62 9.94 -39.34 -0.39 -2.01 16 5 C 0.13 1.67 6.47 -39.20 -0.25 1.42 16 6 C -0.16 -1.68 5.75 -104.44 -0.60 -2.28 16 7 C -0.08 -0.76 9.32 -39.53 -0.37 -1.13 16 8 C -0.08 -0.63 5.86 -27.81 -0.16 -0.80 16 9 C -0.15 -1.51 5.46 -26.48 -0.14 -1.65 16 10 C 0.07 0.96 3.21 -27.67 -0.09 0.87 16 11 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 12 C 0.51 8.51 7.19 -10.99 -0.08 8.43 16 13 O -0.52 -11.07 16.52 -14.22 -0.23 -11.30 16 14 N -0.72 -11.35 5.49 -60.29 -0.33 -11.68 16 15 C 0.13 2.61 5.61 -4.04 -0.02 2.59 16 16 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 17 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 21 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 O -0.29 -4.30 9.46 -39.03 -0.37 -4.67 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 4.94 8.23 -40.82 -0.34 4.60 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 40 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -33.62 341.81 -9.14 -42.76 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.16 Total: 1.31 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.30 Total: -11.27 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.44 Total: -37.96 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.60 Total: -15.98 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.62 -9.14 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281641512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.309 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds