Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38290 * 120.00366 * 2 1 4 4 C 1.37974 * 119.95022 * 179.97438 * 3 2 1 5 5 C 1.39145 * 120.21768 * 0.02562 * 4 3 2 6 6 C 1.38371 * 119.69579 * 0.15012 * 5 4 3 7 7 C 1.38098 * 120.00538 * 180.02562 * 2 1 3 8 8 C 1.50771 * 121.40729 * 179.76985 * 6 5 4 9 9 C 1.53068 * 109.68905 * 17.65516 * 8 6 5 10 10 C 1.53419 * 108.30139 * 311.85715 * 9 8 6 11 11 H 1.08996 * 109.68501 * 304.98803 * 10 9 8 12 12 C 1.50700 * 109.68540 * 184.46138 * 10 9 8 13 13 O 1.21284 * 119.99701 * 244.99726 * 12 10 9 14 14 N 1.34774 * 119.99956 * 64.99952 * 12 10 9 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47337 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.46997 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 O 1.35845 * 118.49072 * 180.21427 * 5 4 3 26 26 H 1.09006 * 109.47258 * 89.99998 * 1 2 3 27 27 H 1.09001 * 109.47669 * 209.99632 * 1 2 3 28 28 H 1.09002 * 109.47242 * 329.99845 * 1 2 3 29 29 H 1.07996 * 120.02300 * 359.95306 * 3 2 1 30 30 H 1.08001 * 119.88986 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.84535 * 359.97438 * 7 2 1 32 32 H 1.08997 * 109.43765 * 257.58460 * 8 6 5 33 33 H 1.09005 * 109.43273 * 137.72090 * 8 6 5 34 34 H 1.08992 * 109.70157 * 192.15185 * 9 8 6 35 35 H 1.09002 * 109.72869 * 71.57138 * 9 8 6 36 36 H 0.96999 * 120.00050 * 359.97438 * 14 12 10 37 37 H 1.09005 * 109.47136 * 59.99929 * 15 14 12 38 38 H 1.09002 * 109.47352 * 299.99897 * 15 14 12 39 39 H 1.09005 * 109.46767 * 60.00068 * 16 15 14 40 40 H 1.09002 * 109.47113 * 300.00408 * 16 15 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1976 0.0000 4 6 3.5783 1.1963 0.0005 5 6 4.2774 -0.0067 0.0005 6 6 3.5827 -1.2034 -0.0031 7 6 2.1976 -1.1959 -0.0005 8 6 4.3010 -2.5289 -0.0085 9 6 5.7545 -2.3296 0.4282 10 6 6.3388 -1.1536 -0.3650 11 1 6.2175 -1.3346 -1.4330 12 6 7.8021 -0.9988 -0.0394 13 8 8.1950 -0.0006 0.5264 14 7 8.6739 -1.9695 -0.3771 15 6 10.0964 -1.8187 -0.0611 16 6 10.8604 -3.0519 -0.5475 17 6 12.3238 -2.8965 -0.2230 18 1 12.6739 -2.0073 0.2803 19 6 13.2158 -3.8895 -0.5685 20 7 14.4929 -3.7541 -0.2849 21 14 12.6103 -5.4270 -1.4396 22 1 12.2405 -6.4536 -0.4322 23 1 11.4220 -5.0929 -2.2650 24 1 13.6873 -5.9570 -2.3140 25 8 5.6353 0.0329 0.0055 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6590 2.1331 -0.0008 30 1 4.1173 2.1321 0.0010 31 1 1.6552 -2.1298 -0.0005 32 1 4.2787 -2.9496 -1.0137 33 1 3.8057 -3.2126 0.6811 34 1 6.3276 -3.2333 0.2211 35 1 5.7912 -2.1077 1.4947 36 1 8.3595 -2.7679 -0.8294 37 1 10.2203 -1.7169 1.0171 38 1 10.4867 -0.9301 -0.5572 39 1 10.7366 -3.1541 -1.6257 40 1 10.4701 -3.9403 -0.0511 41 1 15.1203 -4.4529 -0.5276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281641512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -89.506927 kcal Electronic energy + Delta-G solvation = -22050.723129 eV Core-core repulsion = 18700.997335 eV Total energy + Delta-G solvation = -3349.725794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02941 -40.53457 -38.63620 -36.71098 -35.46410 -34.76491 -33.26262 -32.29789 -31.29602 -28.69208 -27.11724 -26.07221 -24.44398 -23.35475 -22.72014 -21.91535 -20.55304 -19.12286 -18.85419 -18.56351 -17.48227 -16.80846 -16.45977 -16.22201 -16.10125 -15.72164 -15.41011 -15.12196 -14.96406 -14.76128 -14.57133 -14.48662 -14.19056 -13.83062 -13.45487 -13.36283 -13.15767 -13.03949 -12.61351 -12.30668 -12.22260 -12.17922 -12.05678 -11.89108 -11.75380 -11.51851 -11.42009 -10.83990 -10.78496 -10.17062 -9.73757 -8.98353 -8.29538 -6.37430 0.35580 0.41739 1.40231 1.41515 1.43544 1.54439 1.56128 2.37809 2.58403 2.77573 3.05560 3.45788 3.50112 3.71863 3.79862 3.86960 4.04496 4.19489 4.26541 4.33251 4.39473 4.41628 4.53577 4.60322 4.72811 4.74290 4.86604 4.90916 4.97772 5.03030 5.07619 5.14792 5.18869 5.35876 5.36983 5.39770 5.46190 5.61658 5.68631 5.87870 6.21423 6.36658 6.53198 6.70737 7.13099 7.27061 8.87282 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.002760 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.310767 B =10140.996329 C =10713.943285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.164 4.164 5 C 0.097 3.903 6 C -0.164 4.164 7 C -0.088 4.088 8 C -0.071 4.071 9 C -0.145 4.145 10 C 0.080 3.920 11 H 0.124 0.876 12 C 0.513 3.487 13 O -0.578 6.578 14 N -0.703 5.703 15 C 0.145 3.855 16 C -0.012 4.012 17 C -0.541 4.541 18 H 0.026 0.974 19 C 0.001 3.999 20 N -0.952 5.952 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.233 1.233 24 H -0.289 1.289 25 O -0.323 6.323 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.418 0.582 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.792 -0.319 -3.263 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.182 4.182 5 C 0.052 3.948 6 C -0.165 4.165 7 C -0.105 4.105 8 C -0.107 4.107 9 C -0.183 4.183 10 C 0.020 3.980 11 H 0.142 0.858 12 C 0.299 3.701 13 O -0.457 6.457 14 N -0.356 5.356 15 C 0.021 3.979 16 C -0.049 4.049 17 C -0.579 4.579 18 H 0.045 0.955 19 C -0.196 4.196 20 N -0.591 5.591 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.155 1.155 24 H -0.215 1.215 25 O -0.237 6.237 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -32.212 0.474 -2.821 32.339 hybrid contribution 0.937 -0.403 -0.181 1.036 sum -31.276 0.072 -3.002 31.420 Atomic orbital electron populations 1.20766 0.88899 1.03632 1.03036 1.20196 0.97766 0.92679 1.01702 1.21077 0.92077 0.99287 0.98605 1.20792 0.94942 0.96233 1.06272 1.19072 0.81341 0.94923 0.99424 1.20139 0.95329 0.94343 1.06688 1.21099 0.91967 0.99063 0.98417 1.20580 0.92295 0.93253 1.04591 1.22259 0.98255 0.97706 1.00095 1.22331 0.87718 0.85990 1.01940 0.85821 1.20607 0.88197 0.82820 0.78490 1.90713 1.80420 1.31386 1.43150 1.45839 1.07665 1.21865 1.60273 1.21095 0.78414 0.99173 0.99192 1.19656 0.93313 0.94175 0.97785 1.21255 0.92756 1.04874 1.39055 0.95539 1.26139 0.94627 1.02642 0.96161 1.70088 1.04042 1.36025 1.48993 0.85504 0.79159 0.77936 0.79054 1.18869 1.15530 1.21506 1.86025 1.16732 1.36611 1.84380 0.90436 0.90554 0.90910 0.83484 0.85925 0.83117 0.87674 0.87352 0.86285 0.91510 0.74412 0.93649 0.93784 0.94136 0.94096 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 71.24 0.71 -0.20 16 2 C -0.12 -1.83 5.88 -19.88 -0.12 -1.95 16 3 C -0.09 -1.61 9.70 22.22 0.22 -1.40 16 4 C -0.16 -3.80 9.94 22.43 0.22 -3.58 16 5 C 0.10 2.45 6.47 22.52 0.15 2.59 16 6 C -0.16 -3.09 5.75 -19.75 -0.11 -3.20 16 7 C -0.09 -1.31 9.32 22.30 0.21 -1.10 16 8 C -0.07 -0.92 5.86 29.89 0.18 -0.75 16 9 C -0.15 -2.55 5.46 30.76 0.17 -2.38 16 10 C 0.08 1.94 3.21 29.99 0.10 2.04 16 11 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 12 C 0.51 16.97 7.19 87.66 0.63 17.60 16 13 O -0.58 -25.68 16.52 15.86 0.26 -25.42 16 14 N -0.70 -21.22 5.49 -463.05 -2.54 -23.76 16 15 C 0.14 5.82 5.61 86.38 0.48 6.31 16 16 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 17 C -0.54 -30.57 9.66 25.60 0.25 -30.32 16 18 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 19 C 0.00 0.07 5.47 84.66 0.46 0.54 16 20 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 21 Si 0.96 41.26 27.47 68.60 1.88 43.14 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.23 -8.67 6.54 99.48 0.65 -8.02 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 25 O -0.32 -9.90 9.46 -72.91 -0.69 -10.59 16 26 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 28 H 0.07 0.52 8.09 -2.39 -0.02 0.51 16 29 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.12 1.45 7.85 -2.39 -0.02 1.43 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.42 8.97 8.23 -92.71 -0.76 8.21 16 37 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 40 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -78.43 341.81 3.09 -75.34 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.21 Total: 16.28 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 3.66 Total: -16.18 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.24 Total: -82.57 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.43 Total: -36.01 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -78.43 3.09 -75.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281641512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.165 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds