Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 112.90570 * 2 1 4 4 C 1.53771 * 113.61757 * 228.74322 * 2 1 3 5 5 C 1.53780 * 87.08239 * 270.88652 * 4 2 1 6 6 C 1.53781 * 87.08186 * 334.56688 * 5 4 2 7 7 H 1.08997 * 113.61268 * 140.06777 * 6 5 4 8 8 N 1.46499 * 113.61571 * 270.88445 * 6 5 4 9 9 C 1.34777 * 120.00098 * 255.49593 * 8 6 5 10 10 O 1.21585 * 119.99992 * 359.97438 * 9 8 6 11 11 C 1.47538 * 119.99730 * 180.02562 * 9 8 6 12 12 C 1.39657 * 120.19975 * 359.97438 * 11 9 8 13 13 C 1.37829 * 119.92120 * 179.70299 * 12 11 9 14 14 C 1.38576 * 120.31946 * 0.25522 * 13 12 11 15 15 C 1.38020 * 120.40215 * 0.04450 * 14 13 12 16 16 C 1.38835 * 120.07507 * 359.97438 * 15 14 13 17 17 O 1.35512 * 120.16253 * 180.02562 * 16 15 14 18 18 C 1.34814 * 117.00219 * 354.40004 * 17 16 15 19 19 H 1.07999 * 120.00047 * 5.07135 * 18 17 16 20 20 C 1.38699 * 120.00125 * 185.06455 * 18 17 16 21 21 N 1.31513 * 120.00118 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47166 * 60.00597 * 22 20 18 24 24 H 1.48505 * 109.46860 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47479 * 300.00078 * 22 20 18 26 26 H 1.08998 * 109.47560 * 288.75327 * 1 2 3 27 27 H 1.09000 * 109.47096 * 48.75416 * 1 2 3 28 28 H 1.09001 * 109.47163 * 168.75023 * 1 2 3 29 29 H 1.09001 * 109.47413 * 191.24971 * 3 2 1 30 30 H 1.09001 * 109.47135 * 311.24590 * 3 2 1 31 31 H 1.08999 * 109.47634 * 71.24554 * 3 2 1 32 32 H 1.09007 * 113.61582 * 156.33794 * 4 2 1 33 33 H 1.09005 * 113.69174 * 25.44806 * 4 2 1 34 34 H 1.09007 * 113.61208 * 220.01692 * 5 4 2 35 35 H 1.08995 * 113.61600 * 89.12013 * 5 4 2 36 36 H 0.97005 * 119.99969 * 75.48830 * 8 6 5 37 37 H 1.08001 * 120.04270 * 359.97273 * 12 11 9 38 38 H 1.07996 * 119.83952 * 180.28002 * 13 12 11 39 39 H 1.08004 * 119.79440 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.96477 * 179.97438 * 15 14 13 41 41 H 0.97003 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0592 5 6 2.0929 -2.0425 0.0002 6 6 2.1460 -0.9290 1.0595 7 1 1.4955 -1.1092 1.9154 8 7 3.5075 -0.5537 1.4489 9 6 4.0063 -0.9610 2.6328 10 8 3.3262 -1.6395 3.3780 11 6 5.3773 -0.5825 3.0250 12 6 6.1620 0.1972 2.1725 13 6 7.4398 0.5526 2.5474 14 6 7.9531 0.1355 3.7651 15 6 7.1915 -0.6406 4.6152 16 6 5.9025 -1.0085 4.2540 17 8 5.1530 -1.7700 5.0875 18 6 5.7559 -2.2349 6.2001 19 1 6.7647 -1.9294 6.4354 20 6 5.0806 -3.1056 7.0426 21 7 3.8524 -3.4780 6.7559 22 14 5.9164 -3.7502 8.5838 23 1 6.2806 -2.6102 9.4632 24 1 4.9894 -4.6574 9.3070 25 1 7.1438 -4.4960 8.2063 26 1 -0.3634 0.3304 0.9731 27 1 -0.3633 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7727 31 1 1.9626 1.8727 0.9731 32 1 3.1592 -0.6499 -1.3488 33 1 1.4957 -1.1094 -1.9152 34 1 2.9718 -2.6874 0.0003 35 1 1.1569 -2.6009 0.0002 36 1 4.0500 -0.0121 0.8545 37 1 5.7664 0.5251 1.2225 38 1 8.0438 1.1594 1.8891 39 1 8.9554 0.4193 4.0506 40 1 7.5988 -0.9621 5.5624 41 1 3.3802 -4.0871 7.3449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287037522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = -17.700623 kcal Electronic energy + Delta-G solvation = -23116.984905 eV Core-core repulsion = 19770.372867 eV Total energy + Delta-G solvation = -3346.612039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34275 -39.18059 -37.44711 -36.30649 -32.94318 -32.31999 -30.76739 -30.09889 -28.90850 -27.45700 -25.52850 -25.01652 -23.00837 -22.27988 -21.35170 -19.86289 -18.50870 -17.94520 -17.31293 -16.19742 -15.66331 -14.83621 -14.70381 -14.59674 -14.39497 -14.07433 -13.99651 -13.72175 -13.55389 -13.34882 -12.98552 -12.62370 -12.43876 -12.29240 -12.12776 -11.70456 -11.54101 -11.40226 -11.18412 -11.11671 -10.87462 -10.80049 -10.76794 -10.47208 -10.16904 -9.95801 -9.55694 -8.86669 -8.81772 -8.46156 -8.25433 -7.29753 -6.43024 -4.03125 1.73097 2.33013 3.12455 3.14674 3.17039 3.67255 3.75713 3.94641 4.40117 4.57780 4.68365 4.83687 5.01321 5.08578 5.16725 5.21200 5.45266 5.48577 5.52828 5.59056 5.62409 5.71906 5.73669 5.78866 5.89153 5.96416 6.02302 6.05547 6.11436 6.13484 6.22204 6.34278 6.43773 6.57507 6.70810 6.92311 7.06530 7.10122 7.25332 7.30463 7.70506 7.93587 8.18098 8.96377 9.14675 9.68965 10.70693 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.004736 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.913051 B = 5911.116020 C = 7184.346105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.155 4.155 6 C 0.138 3.862 7 H 0.097 0.903 8 N -0.724 5.724 9 C 0.555 3.445 10 O -0.500 6.500 11 C -0.227 4.227 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.123 6.123 18 C -0.405 4.405 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.391 0.609 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 7.354 -13.094 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.169 4.169 5 C -0.194 4.194 6 C 0.031 3.969 7 H 0.115 0.885 8 N -0.379 5.379 9 C 0.345 3.655 10 O -0.374 6.374 11 C -0.231 4.231 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.021 6.021 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.713 6.574 -12.377 14.119 hybrid contribution 0.879 -0.005 0.396 0.964 sum -0.834 6.569 -11.981 13.689 Atomic orbital electron populations 1.21544 0.92594 1.02016 1.02104 1.22215 0.96037 0.94789 0.96682 1.21671 1.00163 0.95376 1.01993 1.23055 1.00657 0.96588 0.96603 1.23354 1.02587 0.97006 0.96494 1.21779 0.84656 0.94067 0.96374 0.88450 1.45600 1.14736 1.56856 1.20694 1.18244 0.86787 0.79891 0.80576 1.90940 1.59573 1.36149 1.50693 1.18848 0.95733 1.12062 0.96496 1.20740 0.93731 0.94580 0.96672 1.20453 0.96837 1.08820 0.98913 1.20891 0.98095 0.94570 0.93396 1.21154 0.95562 1.06380 1.02624 1.19278 0.89405 0.89676 0.88713 1.84174 1.35385 1.53643 1.28903 1.21451 1.00233 1.27638 0.98714 0.88938 1.25380 0.95792 0.95897 0.99211 1.70118 1.09932 1.29813 1.36514 0.85801 0.78811 0.79002 0.79918 1.19366 1.20157 1.19374 0.92043 0.92310 0.92181 0.92739 0.92637 0.92133 0.90371 0.91566 0.91059 0.89626 0.77314 0.87222 0.87306 0.87199 0.85090 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.07 37.16 0.34 -0.89 16 2 C -0.10 -1.07 1.36 -153.70 -0.21 -1.28 16 3 C -0.13 -1.38 8.58 37.16 0.32 -1.06 16 4 C -0.13 -1.38 7.09 -25.92 -0.18 -1.56 16 5 C -0.16 -2.04 7.53 -25.92 -0.20 -2.24 16 6 C 0.14 2.07 3.74 -67.12 -0.25 1.82 16 7 H 0.10 1.73 7.49 -51.93 -0.39 1.35 16 8 N -0.72 -11.99 4.77 -54.06 -0.26 -12.25 16 9 C 0.56 12.39 7.76 -12.47 -0.10 12.30 16 10 O -0.50 -13.86 14.80 -16.56 -0.25 -14.11 16 11 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 12 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 13 C -0.23 -3.82 10.03 -39.61 -0.40 -4.21 16 14 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 15 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 16 C 0.19 4.74 6.66 -38.60 -0.26 4.49 16 17 O -0.12 -3.66 7.84 -21.03 -0.16 -3.83 16 18 C -0.40 -11.53 9.49 30.90 0.29 -11.24 16 19 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 20 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 21 N -0.83 -25.27 13.67 55.48 0.76 -24.51 16 22 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 7.34 -51.93 -0.38 0.18 16 29 H 0.05 0.52 6.58 -51.93 -0.34 0.18 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.03 7.65 -51.93 -0.40 0.64 16 36 H 0.39 5.32 5.11 -40.82 -0.21 5.11 16 37 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -34.00 335.98 -7.91 -41.91 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.55 Total: 8.30 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.48 Total: -16.17 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.50 Total: -36.76 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.41 Total: -17.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.00 -7.91 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287037522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.208 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds