Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 112.90570 * 2 1 4 4 C 1.53771 * 113.61757 * 228.74322 * 2 1 3 5 5 C 1.53780 * 87.08239 * 270.88652 * 4 2 1 6 6 C 1.53781 * 87.08186 * 334.56688 * 5 4 2 7 7 H 1.08997 * 113.61268 * 140.06777 * 6 5 4 8 8 N 1.46499 * 113.61571 * 270.88445 * 6 5 4 9 9 C 1.34777 * 120.00098 * 255.49593 * 8 6 5 10 10 O 1.21585 * 119.99992 * 359.97438 * 9 8 6 11 11 C 1.47538 * 119.99730 * 180.02562 * 9 8 6 12 12 C 1.39657 * 120.19975 * 359.97438 * 11 9 8 13 13 C 1.37829 * 119.92120 * 179.70299 * 12 11 9 14 14 C 1.38576 * 120.31946 * 0.25522 * 13 12 11 15 15 C 1.38020 * 120.40215 * 0.04450 * 14 13 12 16 16 C 1.38835 * 120.07507 * 359.97438 * 15 14 13 17 17 O 1.35512 * 120.16253 * 180.02562 * 16 15 14 18 18 C 1.34814 * 117.00219 * 354.40004 * 17 16 15 19 19 H 1.07999 * 120.00047 * 5.07135 * 18 17 16 20 20 C 1.38699 * 120.00125 * 185.06455 * 18 17 16 21 21 N 1.31513 * 120.00118 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47166 * 60.00597 * 22 20 18 24 24 H 1.48505 * 109.46860 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47479 * 300.00078 * 22 20 18 26 26 H 1.08998 * 109.47560 * 288.75327 * 1 2 3 27 27 H 1.09000 * 109.47096 * 48.75416 * 1 2 3 28 28 H 1.09001 * 109.47163 * 168.75023 * 1 2 3 29 29 H 1.09001 * 109.47413 * 191.24971 * 3 2 1 30 30 H 1.09001 * 109.47135 * 311.24590 * 3 2 1 31 31 H 1.08999 * 109.47634 * 71.24554 * 3 2 1 32 32 H 1.09007 * 113.61582 * 156.33794 * 4 2 1 33 33 H 1.09005 * 113.69174 * 25.44806 * 4 2 1 34 34 H 1.09007 * 113.61208 * 220.01692 * 5 4 2 35 35 H 1.08995 * 113.61600 * 89.12013 * 5 4 2 36 36 H 0.97005 * 119.99969 * 75.48830 * 8 6 5 37 37 H 1.08001 * 120.04270 * 359.97273 * 12 11 9 38 38 H 1.07996 * 119.83952 * 180.28002 * 13 12 11 39 39 H 1.08004 * 119.79440 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.96477 * 179.97438 * 15 14 13 41 41 H 0.97003 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0592 5 6 2.0929 -2.0425 0.0002 6 6 2.1460 -0.9290 1.0595 7 1 1.4955 -1.1092 1.9154 8 7 3.5075 -0.5537 1.4489 9 6 4.0063 -0.9610 2.6328 10 8 3.3262 -1.6395 3.3780 11 6 5.3773 -0.5825 3.0250 12 6 6.1620 0.1972 2.1725 13 6 7.4398 0.5526 2.5474 14 6 7.9531 0.1355 3.7651 15 6 7.1915 -0.6406 4.6152 16 6 5.9025 -1.0085 4.2540 17 8 5.1530 -1.7700 5.0875 18 6 5.7559 -2.2349 6.2001 19 1 6.7647 -1.9294 6.4354 20 6 5.0806 -3.1056 7.0426 21 7 3.8524 -3.4780 6.7559 22 14 5.9164 -3.7502 8.5838 23 1 6.2806 -2.6102 9.4632 24 1 4.9894 -4.6574 9.3070 25 1 7.1438 -4.4960 8.2063 26 1 -0.3634 0.3304 0.9731 27 1 -0.3633 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7727 31 1 1.9626 1.8727 0.9731 32 1 3.1592 -0.6499 -1.3488 33 1 1.4957 -1.1094 -1.9152 34 1 2.9718 -2.6874 0.0003 35 1 1.1569 -2.6009 0.0002 36 1 4.0500 -0.0121 0.8545 37 1 5.7664 0.5251 1.2225 38 1 8.0438 1.1594 1.8891 39 1 8.9554 0.4193 4.0506 40 1 7.5988 -0.9621 5.5624 41 1 3.3802 -4.0871 7.3449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287037522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = -40.042238 kcal Electronic energy + Delta-G solvation = -23117.953710 eV Core-core repulsion = 19770.372867 eV Total energy + Delta-G solvation = -3347.580844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67981 -40.74570 -39.15071 -38.01828 -34.55306 -34.29429 -32.05213 -31.31540 -30.57636 -28.28869 -27.43901 -26.34685 -24.45211 -23.45707 -22.94623 -21.47126 -19.97019 -19.68964 -18.78809 -17.89290 -16.99144 -16.38630 -16.23655 -16.00213 -15.93091 -15.58707 -15.41707 -15.19302 -15.00907 -14.70236 -14.28983 -14.23266 -13.92966 -13.55462 -13.15021 -13.01058 -12.99585 -12.70578 -12.52190 -12.39443 -12.36885 -12.33545 -12.15623 -11.69240 -11.43455 -11.16932 -11.03208 -10.83191 -10.61055 -10.01463 -9.75715 -9.04352 -8.45061 -6.16459 0.11581 0.72075 1.31479 1.44784 1.49703 2.08646 2.15514 2.23521 2.86962 3.21491 3.40310 3.46315 3.64832 3.90423 3.93628 3.97838 4.07343 4.27451 4.29706 4.51025 4.57188 4.59528 4.67886 4.77527 4.84550 4.91074 4.97824 4.98940 5.02557 5.06476 5.10813 5.15490 5.18744 5.20245 5.43878 5.45860 5.48608 5.60657 5.68810 5.73302 5.95416 6.16458 6.70878 6.93906 7.49939 7.79983 8.75383 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.004736 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.913051 B = 5911.116020 C = 7184.346105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.112 4.112 5 C -0.158 4.158 6 C 0.111 3.889 7 H 0.054 0.946 8 N -0.696 5.696 9 C 0.548 3.452 10 O -0.570 6.570 11 C -0.245 4.245 12 C -0.030 4.030 13 C -0.199 4.199 14 C -0.040 4.040 15 C -0.257 4.257 16 C 0.148 3.852 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.253 1.253 24 H -0.273 1.273 25 H -0.254 1.254 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.410 0.590 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 10.216 -16.562 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.193 4.193 4 C -0.149 4.149 5 C -0.197 4.197 6 C 0.005 3.995 7 H 0.073 0.927 8 N -0.351 5.351 9 C 0.338 3.662 10 O -0.449 6.449 11 C -0.250 4.250 12 C -0.049 4.049 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.277 4.277 16 C 0.093 3.907 17 O -0.092 6.092 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.841 3.159 23 H -0.177 1.177 24 H -0.198 1.198 25 H -0.178 1.178 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.249 0.751 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.141 0.859 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.090 9.518 -15.949 18.605 hybrid contribution 0.170 -0.611 1.105 1.274 sum 1.260 8.907 -14.845 17.358 Atomic orbital electron populations 1.21595 0.91645 1.02864 1.02326 1.22185 0.96728 0.95029 0.94275 1.21713 1.01089 0.94522 1.02014 1.23000 1.01893 0.93789 0.96191 1.23378 1.02168 0.97130 0.97048 1.22101 0.83421 0.97709 0.96251 0.92725 1.45293 1.15388 1.55452 1.18920 1.18586 0.86973 0.79192 0.81433 1.90920 1.61306 1.39498 1.53186 1.19297 0.96214 1.12905 0.96595 1.21276 0.93743 0.92472 0.97369 1.21181 0.96207 1.06094 0.98290 1.21443 0.99375 0.92077 0.92869 1.21304 0.94877 1.07895 1.03585 1.20104 0.91102 0.89816 0.89723 1.84182 1.37416 1.57038 1.30519 1.22016 1.01032 1.28226 0.99234 0.87557 1.26783 0.96388 0.95904 1.03086 1.70323 1.12547 1.32445 1.38883 0.84617 0.77781 0.78628 0.74883 1.17712 1.19797 1.17783 0.93360 0.89675 0.91980 0.91622 0.90101 0.93781 0.89001 0.89088 0.92908 0.89015 0.75120 0.82476 0.81695 0.82740 0.85871 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.07 71.98 0.65 -1.64 16 2 C -0.08 -1.66 1.36 -51.66 -0.07 -1.73 16 3 C -0.14 -2.35 8.58 71.98 0.62 -1.73 16 4 C -0.11 -1.98 7.09 31.12 0.22 -1.76 16 5 C -0.16 -4.14 7.53 31.12 0.23 -3.91 16 6 C 0.11 3.45 3.74 45.52 0.17 3.62 16 7 H 0.05 2.16 7.49 -2.39 -0.02 2.14 16 8 N -0.70 -23.11 4.77 -443.20 -2.11 -25.23 16 9 C 0.55 25.80 7.76 86.70 0.67 26.47 16 10 O -0.57 -34.86 14.80 16.91 0.25 -34.61 16 11 C -0.25 -10.92 5.89 -19.99 -0.12 -11.04 16 12 C -0.03 -0.93 9.53 22.52 0.21 -0.71 16 13 C -0.20 -5.34 10.03 22.25 0.22 -5.12 16 14 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 15 C -0.26 -11.14 9.16 22.36 0.20 -10.94 16 16 C 0.15 7.77 6.66 22.91 0.15 7.93 16 17 O -0.19 -12.28 7.84 0.92 0.01 -12.27 16 18 C -0.43 -26.39 9.49 67.93 0.64 -25.75 16 19 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 20 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 21 N -0.91 -60.27 13.67 21.62 0.30 -59.97 16 22 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 23 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.09 7.34 -2.39 -0.02 1.07 16 29 H 0.06 0.97 6.58 -2.39 -0.02 0.95 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.42 7.96 -2.38 -0.02 1.40 16 33 H 0.09 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 2.25 7.65 -2.39 -0.02 2.23 16 36 H 0.41 10.07 5.11 -92.70 -0.47 9.59 16 37 H 0.16 3.27 6.40 -2.91 -0.02 3.25 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 41 H 0.27 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -88.41 335.98 5.55 -82.86 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.57 Total: 30.64 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.51 Total: -28.22 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.82 Total: -85.20 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: 0.26 Total: -46.88 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -88.41 5.55 -82.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287037522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.815 kcal (2) G-P(sol) polarization free energy of solvation -88.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds