Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.69534 * 2 1 4 4 C 1.53539 * 109.58207 * 120.34468 * 2 1 3 5 5 N 1.47304 * 107.57409 * 61.58386 * 4 2 1 6 6 C 1.34779 * 121.15912 * 221.96372 * 5 4 2 7 7 O 1.21287 * 120.00114 * 174.16539 * 6 5 4 8 8 C 1.50701 * 119.99606 * 354.17439 * 6 5 4 9 9 C 1.53008 * 109.47005 * 185.43326 * 8 6 5 10 10 C 1.50691 * 109.47364 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00185 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99845 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00098 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46905 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47198 * 119.99699 * 14 12 10 17 17 H 1.48495 * 109.47080 * 239.99882 * 14 12 10 18 18 C 1.40546 * 117.68564 * 41.94592 * 5 4 2 19 19 C 1.38570 * 120.09457 * 166.40437 * 18 5 4 20 20 C 1.38253 * 119.88399 * 179.82505 * 19 18 5 21 21 C 1.38280 * 120.05667 * 359.96384 * 20 19 18 22 22 C 1.38200 * 120.29628 * 0.05378 * 21 20 19 23 23 C 1.38703 * 120.05350 * 0.02562 * 22 21 20 24 24 O 1.35899 * 119.67025 * 179.78854 * 23 22 21 25 25 H 1.09003 * 109.46614 * 299.65908 * 1 2 3 26 26 H 1.09005 * 109.46664 * 59.65538 * 1 2 3 27 27 H 1.08994 * 109.47094 * 179.65789 * 1 2 3 28 28 H 1.08997 * 109.47403 * 180.34290 * 3 2 1 29 29 H 1.08997 * 109.47323 * 300.34068 * 3 2 1 30 30 H 1.09000 * 109.47127 * 60.34372 * 3 2 1 31 31 H 1.09000 * 109.83312 * 302.06803 * 4 2 1 32 32 H 1.09000 * 109.83735 * 181.09962 * 4 2 1 33 33 H 1.08997 * 109.47403 * 305.42943 * 8 6 5 34 34 H 1.09004 * 109.47458 * 65.43410 * 8 6 5 35 35 H 1.09006 * 109.46649 * 299.99829 * 9 8 6 36 36 H 1.08997 * 109.47162 * 59.99428 * 9 8 6 37 37 H 0.97006 * 119.99984 * 179.97438 * 13 12 10 38 38 H 1.08004 * 120.05854 * 359.81227 * 19 18 5 39 39 H 1.08000 * 119.97344 * 179.68316 * 20 19 18 40 40 H 1.08005 * 119.84894 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.97435 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0457 1.4404 0.0000 4 6 2.0446 -0.7308 1.2484 5 7 1.5641 -2.1216 1.1794 6 6 1.0877 -2.7498 2.2724 7 8 0.6000 -3.8558 2.1720 8 6 1.1607 -2.0780 3.6194 9 6 0.6818 -3.0492 4.7004 10 6 0.7554 -2.3777 6.0474 11 1 1.1081 -1.3598 6.1249 12 6 0.3716 -3.0624 7.1810 13 7 -0.0593 -4.3013 7.0865 14 14 0.4622 -2.2297 8.8507 15 1 0.9760 -0.8461 8.6866 16 1 -0.8930 -2.1863 9.4564 17 1 1.3760 -2.9948 9.7364 18 6 1.6193 -2.7705 -0.0661 19 6 1.4527 -4.1440 -0.1420 20 6 1.5042 -4.7774 -1.3698 21 6 1.7210 -4.0414 -2.5202 22 6 1.8882 -2.6714 -2.4502 23 6 1.8397 -2.0275 -1.2226 24 8 2.0094 -0.6805 -1.1624 25 1 -0.3633 0.5086 0.8931 26 1 -0.3633 0.5192 -0.8869 27 1 -0.3633 -1.0276 -0.0061 28 1 3.1356 1.4362 -0.0061 29 1 1.6794 1.9575 -0.8869 30 1 1.6894 1.9539 0.8930 31 1 1.6557 -0.2492 2.1455 32 1 3.1345 -0.7163 1.2626 33 1 2.1905 -1.7855 3.8242 34 1 0.5248 -1.1927 3.6189 35 1 -0.3481 -3.3417 4.4956 36 1 1.3176 -3.9346 4.7009 37 1 -0.3290 -4.7831 7.8841 38 1 1.2830 -4.7188 0.7566 39 1 1.3797 -5.8485 -1.4300 40 1 1.7602 -4.5396 -3.4777 41 1 2.0576 -2.1016 -3.3520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291345403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -44.464890 kcal Electronic energy + Delta-G solvation = -23400.703208 eV Core-core repulsion = 20052.930583 eV Total energy + Delta-G solvation = -3347.772624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48017 -39.01721 -37.83327 -35.35550 -33.66273 -33.46636 -31.42089 -30.16278 -29.13082 -27.61500 -26.70490 -25.78815 -23.46922 -22.62286 -21.53690 -19.95496 -18.91235 -18.04328 -17.18498 -16.58368 -16.09479 -15.85608 -15.36480 -15.27328 -14.70572 -14.45963 -14.09541 -13.93990 -13.69006 -13.36987 -12.99072 -12.72489 -12.51838 -12.39788 -12.24380 -12.19084 -11.98601 -11.70754 -11.45068 -11.21249 -11.07049 -11.00521 -10.86842 -10.63929 -10.09476 -10.01481 -9.70298 -9.21085 -9.02303 -8.40295 -8.37429 -7.67695 -6.02965 -4.07934 1.36457 1.47597 2.76755 2.94336 3.13116 3.28363 3.35840 3.38498 3.91349 4.24490 4.40211 4.54424 4.56079 4.68840 5.03156 5.06808 5.14651 5.29408 5.31804 5.32490 5.37785 5.42259 5.48918 5.53387 5.61117 5.62454 5.83025 5.92690 6.00572 6.02203 6.03705 6.28639 6.36080 6.57301 6.68224 6.73062 6.97133 7.40178 7.47079 7.65544 7.74247 7.97467 8.27141 8.45227 8.99627 9.56246 11.07968 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.004242 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.619709 B = 6598.776421 C = 7689.809551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 C -0.136 4.136 4 C 0.078 3.922 5 N -0.565 5.565 6 C 0.515 3.485 7 O -0.506 6.506 8 C -0.127 4.127 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.888 5.888 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.092 3.908 19 C -0.118 4.118 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.132 4.132 23 C 0.088 3.912 24 O -0.307 6.307 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 9.073 -18.152 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.061 3.939 3 C -0.193 4.193 4 C -0.045 4.045 5 N -0.291 5.291 6 C 0.307 3.693 7 O -0.380 6.380 8 C -0.166 4.166 9 C -0.001 4.001 10 C -0.567 4.567 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.527 5.527 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.003 4.003 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.151 4.151 23 C 0.041 3.959 24 O -0.222 6.222 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.183 0.817 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.288 8.474 -18.099 20.439 hybrid contribution -0.024 0.370 1.087 1.148 sum 4.265 8.844 -17.012 19.643 Atomic orbital electron populations 1.22350 0.93826 1.03572 1.03281 1.22183 0.94621 0.92948 0.84170 1.21745 1.02330 0.91658 1.03605 1.22710 1.00534 0.81287 0.99989 1.46113 1.61963 1.13673 1.07342 1.21841 0.75475 0.86205 0.85758 1.90523 1.42110 1.20066 1.85261 1.21956 1.02968 1.01521 0.90197 1.18938 0.97597 0.93344 0.90207 1.21199 1.44350 0.99480 0.91637 0.92503 1.25016 0.95155 0.94851 0.99252 1.70000 1.43463 1.10112 1.29087 0.86528 0.77722 0.79552 0.84122 1.19722 1.20962 1.20964 1.18112 1.05139 0.92581 0.84458 1.21883 0.99013 0.92341 1.00551 1.21069 1.01733 1.00042 0.92002 1.20872 1.01117 0.92977 0.98616 1.20321 1.05399 0.94559 0.94804 1.18512 1.02687 0.82225 0.92465 1.86044 1.77127 1.16817 1.42206 0.90559 0.91270 0.91758 0.91162 0.90951 0.89849 0.87103 0.89691 0.89919 0.89789 0.95517 0.95801 0.92910 0.81716 0.85713 0.85745 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 8.45 37.16 0.31 -1.63 16 2 C 0.10 1.10 1.12 -90.34 -0.10 1.00 16 3 C -0.14 -1.05 8.87 37.15 0.33 -0.72 16 4 C 0.08 0.95 5.15 -3.32 -0.02 0.93 16 5 N -0.57 -9.10 2.41 -112.34 -0.27 -9.37 16 6 C 0.51 9.98 7.59 -10.98 -0.08 9.90 16 7 O -0.51 -11.48 12.85 5.55 0.07 -11.41 16 8 C -0.13 -2.49 4.12 -27.88 -0.11 -2.60 16 9 C 0.04 0.96 4.28 -27.88 -0.12 0.84 16 10 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 11 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.09 1.49 5.65 -83.37 -0.47 1.02 16 19 C -0.12 -1.97 8.94 -39.45 -0.35 -2.32 16 20 C -0.13 -1.76 10.05 -39.56 -0.40 -2.16 16 21 C -0.12 -1.39 10.03 -39.58 -0.40 -1.78 16 22 C -0.13 -1.66 9.97 -39.42 -0.39 -2.05 16 23 C 0.09 1.28 6.02 -39.05 -0.23 1.04 16 24 O -0.31 -4.05 9.72 -19.42 -0.19 -4.24 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.91 6.75 -51.93 -0.35 0.56 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.18 6.43 -51.93 -0.33 0.85 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 34 H 0.08 1.48 7.62 -51.93 -0.40 1.08 16 35 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.17 3.14 5.16 -52.56 -0.27 2.87 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -32.98 333.23 -8.06 -41.03 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.96 Total: 0.73 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.45 Total: -11.82 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.47 Total: -35.50 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.12 Total: -15.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.98 -8.06 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291345403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.431 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds