Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.69534 * 2 1 4 4 C 1.53539 * 109.58207 * 120.34468 * 2 1 3 5 5 N 1.47304 * 107.57409 * 61.58386 * 4 2 1 6 6 C 1.34779 * 121.15912 * 221.96372 * 5 4 2 7 7 O 1.21287 * 120.00114 * 174.16539 * 6 5 4 8 8 C 1.50701 * 119.99606 * 354.17439 * 6 5 4 9 9 C 1.53008 * 109.47005 * 185.43326 * 8 6 5 10 10 C 1.50691 * 109.47364 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00185 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99845 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00098 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46905 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47198 * 119.99699 * 14 12 10 17 17 H 1.48495 * 109.47080 * 239.99882 * 14 12 10 18 18 C 1.40546 * 117.68564 * 41.94592 * 5 4 2 19 19 C 1.38570 * 120.09457 * 166.40437 * 18 5 4 20 20 C 1.38253 * 119.88399 * 179.82505 * 19 18 5 21 21 C 1.38280 * 120.05667 * 359.96384 * 20 19 18 22 22 C 1.38200 * 120.29628 * 0.05378 * 21 20 19 23 23 C 1.38703 * 120.05350 * 0.02562 * 22 21 20 24 24 O 1.35899 * 119.67025 * 179.78854 * 23 22 21 25 25 H 1.09003 * 109.46614 * 299.65908 * 1 2 3 26 26 H 1.09005 * 109.46664 * 59.65538 * 1 2 3 27 27 H 1.08994 * 109.47094 * 179.65789 * 1 2 3 28 28 H 1.08997 * 109.47403 * 180.34290 * 3 2 1 29 29 H 1.08997 * 109.47323 * 300.34068 * 3 2 1 30 30 H 1.09000 * 109.47127 * 60.34372 * 3 2 1 31 31 H 1.09000 * 109.83312 * 302.06803 * 4 2 1 32 32 H 1.09000 * 109.83735 * 181.09962 * 4 2 1 33 33 H 1.08997 * 109.47403 * 305.42943 * 8 6 5 34 34 H 1.09004 * 109.47458 * 65.43410 * 8 6 5 35 35 H 1.09006 * 109.46649 * 299.99829 * 9 8 6 36 36 H 1.08997 * 109.47162 * 59.99428 * 9 8 6 37 37 H 0.97006 * 119.99984 * 179.97438 * 13 12 10 38 38 H 1.08004 * 120.05854 * 359.81227 * 19 18 5 39 39 H 1.08000 * 119.97344 * 179.68316 * 20 19 18 40 40 H 1.08005 * 119.84894 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.97435 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0457 1.4404 0.0000 4 6 2.0446 -0.7308 1.2484 5 7 1.5641 -2.1216 1.1794 6 6 1.0877 -2.7498 2.2724 7 8 0.6000 -3.8558 2.1720 8 6 1.1607 -2.0780 3.6194 9 6 0.6818 -3.0492 4.7004 10 6 0.7554 -2.3777 6.0474 11 1 1.1081 -1.3598 6.1249 12 6 0.3716 -3.0624 7.1810 13 7 -0.0593 -4.3013 7.0865 14 14 0.4622 -2.2297 8.8507 15 1 0.9760 -0.8461 8.6866 16 1 -0.8930 -2.1863 9.4564 17 1 1.3760 -2.9948 9.7364 18 6 1.6193 -2.7705 -0.0661 19 6 1.4527 -4.1440 -0.1420 20 6 1.5042 -4.7774 -1.3698 21 6 1.7210 -4.0414 -2.5202 22 6 1.8882 -2.6714 -2.4502 23 6 1.8397 -2.0275 -1.2226 24 8 2.0094 -0.6805 -1.1624 25 1 -0.3633 0.5086 0.8931 26 1 -0.3633 0.5192 -0.8869 27 1 -0.3633 -1.0276 -0.0061 28 1 3.1356 1.4362 -0.0061 29 1 1.6794 1.9575 -0.8869 30 1 1.6894 1.9539 0.8930 31 1 1.6557 -0.2492 2.1455 32 1 3.1345 -0.7163 1.2626 33 1 2.1905 -1.7855 3.8242 34 1 0.5248 -1.1927 3.6189 35 1 -0.3481 -3.3417 4.4956 36 1 1.3176 -3.9346 4.7009 37 1 -0.3290 -4.7831 7.8841 38 1 1.2830 -4.7188 0.7566 39 1 1.3797 -5.8485 -1.4300 40 1 1.7602 -4.5396 -3.4777 41 1 2.0576 -2.1016 -3.3520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291345403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -64.171806 kcal Electronic energy + Delta-G solvation = -23401.557764 eV Core-core repulsion = 20052.930583 eV Total energy + Delta-G solvation = -3348.627180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.61416 -40.37527 -38.86210 -36.60954 -35.66903 -34.43179 -33.25328 -31.37800 -30.30307 -28.39220 -27.99665 -27.38467 -24.88223 -23.64402 -23.20864 -21.19905 -20.12078 -19.12685 -18.87728 -17.93683 -17.53503 -17.17551 -16.60982 -16.46053 -16.25123 -15.82062 -15.25146 -15.14491 -14.92388 -14.62807 -14.29314 -14.19500 -13.80389 -13.39504 -13.36572 -13.18418 -13.04638 -12.94107 -12.84765 -12.66597 -12.46153 -12.45168 -12.09030 -12.00510 -11.82602 -11.63668 -11.29840 -11.17387 -10.59814 -10.50544 -9.48978 -8.83115 -8.19970 -6.34165 0.23262 0.37507 1.42183 1.43462 1.51356 1.55633 1.58316 2.17782 2.41605 2.81741 3.13903 3.32823 3.40948 3.71730 3.73706 3.87621 4.12399 4.16178 4.27763 4.29758 4.41588 4.45664 4.46204 4.51192 4.64223 4.69295 4.76294 4.87858 4.91625 4.98043 5.09646 5.19895 5.26189 5.32067 5.45341 5.50256 5.55703 5.58976 5.80755 5.86956 6.10865 6.14421 6.39457 6.83072 6.99013 7.36497 8.92990 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.004242 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.619709 B = 6598.776421 C = 7689.809551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 C -0.130 4.130 4 C 0.066 3.934 5 N -0.558 5.558 6 C 0.511 3.489 7 O -0.555 6.555 8 C -0.112 4.112 9 C 0.043 3.957 10 C -0.541 4.541 11 H 0.079 0.921 12 C -0.006 4.006 13 N -0.938 5.938 14 Si 0.974 3.026 15 H -0.250 1.250 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.063 3.937 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.102 4.102 22 C -0.131 4.131 23 C 0.086 3.914 24 O -0.309 6.309 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.111 0.889 35 H -0.015 1.015 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 12.367 -19.416 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.060 3.940 3 C -0.187 4.187 4 C -0.055 4.055 5 N -0.283 5.283 6 C 0.304 3.696 7 O -0.433 6.433 8 C -0.151 4.151 9 C 0.006 3.994 10 C -0.578 4.578 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.578 5.578 14 Si 0.797 3.203 15 H -0.173 1.173 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.031 4.031 19 C -0.168 4.168 20 C -0.154 4.154 21 C -0.120 4.120 22 C -0.150 4.150 23 C 0.039 3.961 24 O -0.224 6.224 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.003 0.997 36 H 0.000 1.000 37 H 0.071 0.929 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.470 11.825 -19.405 23.373 hybrid contribution -0.380 -0.687 1.346 1.558 sum 5.090 11.138 -18.059 21.819 Atomic orbital electron populations 1.22351 0.94171 1.01598 1.04699 1.22465 0.94435 0.94368 0.82781 1.21797 1.02778 0.89028 1.05125 1.23128 1.01459 0.79220 1.01682 1.45976 1.60781 1.14970 1.06547 1.21719 0.75533 0.85684 0.86671 1.90529 1.44579 1.22115 1.86071 1.21701 1.04568 1.00405 0.88461 1.18700 0.94489 0.93504 0.92739 1.21693 1.43699 1.00392 0.92061 0.90276 1.26124 0.94584 0.95400 1.04207 1.70182 1.44899 1.12241 1.30445 0.85275 0.77702 0.79226 0.78060 1.17336 1.20728 1.20776 1.18296 1.06977 0.92733 0.85081 1.21753 1.01349 0.93020 1.00716 1.21308 1.01435 1.01129 0.91563 1.21298 0.98564 0.92807 0.99375 1.20780 1.04010 0.95092 0.95083 1.18723 1.02207 0.82876 0.92339 1.86053 1.77155 1.15972 1.43179 0.89079 0.89979 0.95313 0.90468 0.90054 0.87729 0.85352 0.88416 0.87467 0.87079 0.99680 0.99959 0.92862 0.85193 0.84133 0.81801 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.45 71.98 0.61 -2.96 16 2 C 0.10 1.93 1.12 -10.61 -0.01 1.92 16 3 C -0.13 -1.52 8.87 71.98 0.64 -0.88 16 4 C 0.07 1.51 5.15 86.41 0.44 1.95 16 5 N -0.56 -18.30 2.41 -627.71 -1.51 -19.82 16 6 C 0.51 20.88 7.59 87.66 0.67 21.55 16 7 O -0.55 -27.62 12.85 -3.05 -0.04 -27.66 16 8 C -0.11 -4.45 4.12 29.85 0.12 -4.32 16 9 C 0.04 2.38 4.28 29.85 0.13 2.51 16 10 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 11 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 12 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 13 N -0.94 -58.99 13.29 21.45 0.28 -58.71 16 14 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 15 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.06 2.11 5.65 38.06 0.21 2.32 16 19 C -0.15 -5.26 8.94 22.35 0.20 -5.06 16 20 C -0.14 -3.69 10.05 22.28 0.22 -3.47 16 21 C -0.10 -2.18 10.03 22.27 0.22 -1.95 16 22 C -0.13 -2.97 9.97 22.37 0.22 -2.75 16 23 C 0.09 2.38 6.02 22.62 0.14 2.52 16 24 O -0.31 -7.46 9.72 -92.42 -0.90 -8.36 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.03 0.80 6.75 -2.39 -0.02 0.78 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.13 2.40 6.43 -2.39 -0.02 2.38 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.11 3.71 8.09 -2.39 -0.02 3.69 16 34 H 0.11 3.78 7.62 -2.38 -0.02 3.76 16 35 H -0.02 -0.95 8.04 -2.38 -0.02 -0.97 16 36 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 37 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.13 5.54 5.16 -4.18 -0.02 5.52 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 41 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -77.54 333.23 5.38 -72.16 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.01 Total: 15.14 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.51 Total: -18.31 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -1.23 Total: -78.52 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.94 Total: -36.02 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -77.54 5.38 -72.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291345403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.990 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds