Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 120.02595 * 2 1 4 4 C 1.38111 * 120.35457 * 179.32256 * 3 2 1 5 5 C 1.38878 * 119.87202 * 359.16913 * 4 3 2 6 6 C 1.38715 * 119.33008 * 2.23730 * 5 4 3 7 7 C 1.37646 * 120.76736 * 357.80175 * 6 5 4 8 8 C 1.51631 * 118.41198 * 176.11394 * 6 5 4 9 9 N 1.46642 * 108.78634 * 65.40715 * 8 6 5 10 10 C 1.34773 * 119.77234 * 99.62460 * 9 8 6 11 11 O 1.21279 * 120.00182 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99770 * 180.02562 * 10 9 8 13 13 C 1.53011 * 109.46916 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.46785 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00532 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99974 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47069 * 90.00185 * 18 16 14 20 20 H 1.48497 * 109.47161 * 210.00276 * 18 16 14 21 21 H 1.48497 * 109.47095 * 330.00207 * 18 16 14 22 22 C 1.46375 * 120.45339 * 279.59162 * 9 8 6 23 23 C 1.52184 * 111.20001 * 63.74277 * 22 9 8 24 24 O 1.35566 * 120.24351 * 183.70959 * 5 4 3 25 25 H 1.09005 * 109.47024 * 90.00467 * 1 2 3 26 26 H 1.09001 * 109.47257 * 209.99803 * 1 2 3 27 27 H 1.08997 * 109.47287 * 330.00161 * 1 2 3 28 28 H 1.08002 * 119.81918 * 359.03790 * 3 2 1 29 29 H 1.07997 * 120.06582 * 179.42927 * 4 3 2 30 30 H 1.08004 * 120.15574 * 180.70314 * 7 6 5 31 31 H 1.08998 * 109.58688 * 185.19970 * 8 6 5 32 32 H 1.09001 * 109.58294 * 305.48069 * 8 6 5 33 33 H 1.09006 * 109.46721 * 299.98864 * 12 10 9 34 34 H 1.08992 * 109.47481 * 59.99452 * 12 10 9 35 35 H 1.09004 * 109.46411 * 299.99574 * 13 12 10 36 36 H 1.08997 * 109.46857 * 59.99370 * 13 12 10 37 37 H 0.97000 * 120.00239 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.13490 * 184.18460 * 22 9 8 39 39 H 1.08995 * 109.13763 * 303.29709 * 22 9 8 40 40 H 1.09000 * 109.36255 * 59.02111 * 23 22 9 41 41 H 1.09002 * 109.35764 * 178.60824 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1973 0.0000 4 6 3.5800 1.2053 0.0141 5 6 4.2784 0.0053 0.0458 6 6 3.5761 -1.1906 0.0158 7 6 2.1997 -1.1987 0.0005 8 6 4.3608 -2.4869 -0.0391 9 7 5.1177 -2.6339 1.2082 10 6 4.6453 -3.4300 2.1878 11 8 3.5974 -4.0214 2.0362 12 6 5.4187 -3.5843 3.4720 13 6 4.6689 -4.5347 4.4078 14 6 5.4426 -4.6895 5.6917 15 1 6.3760 -4.1631 5.8266 16 6 4.9590 -5.5032 6.6942 17 7 5.6343 -5.6387 7.8144 18 14 3.3442 -6.4130 6.4612 19 1 3.6079 -7.7410 5.8510 20 1 2.6845 -6.5959 7.7789 21 1 2.4567 -5.6255 5.5683 22 6 6.3830 -1.9226 1.3964 23 6 6.1728 -0.4153 1.3934 24 8 5.6311 0.0046 0.1356 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6566 2.1311 -0.0157 29 1 4.1158 2.1429 0.0047 30 1 1.6628 -2.1357 -0.0115 31 1 3.6736 -3.3256 -0.1505 32 1 5.0478 -2.4626 -0.8850 33 1 6.4061 -3.9919 3.2546 34 1 5.5247 -2.6113 3.9515 35 1 3.6817 -4.1267 4.6250 36 1 4.5626 -5.5078 3.9284 37 1 5.2942 -6.2114 8.5196 38 1 6.8220 -2.2201 2.3487 39 1 7.0664 -2.1895 0.5903 40 1 5.4824 -0.1452 2.1925 41 1 7.1278 0.0830 1.5600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291447181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -52.138110 kcal Electronic energy + Delta-G solvation = -23057.537121 eV Core-core repulsion = 19709.431761 eV Total energy + Delta-G solvation = -3348.105360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86095 -39.16384 -37.86473 -35.40355 -33.67767 -32.89980 -31.75368 -31.11180 -29.56893 -27.33656 -26.41819 -25.31887 -23.35458 -22.33125 -21.29390 -20.49999 -18.87184 -18.04057 -17.38501 -16.56750 -15.90750 -15.80083 -15.57166 -15.21523 -14.96152 -14.32614 -14.11390 -14.05505 -13.78443 -13.60023 -13.30298 -12.87755 -12.63126 -12.57092 -12.45017 -12.00368 -11.80486 -11.64743 -11.53185 -11.34941 -11.18303 -10.99207 -10.30911 -10.14974 -10.02928 -9.81071 -9.36265 -9.20906 -8.95264 -8.66165 -8.52585 -8.43945 -6.05209 -4.04134 0.99378 1.20136 2.98379 3.03603 3.32792 3.36268 3.42955 3.53729 3.88126 4.49064 4.52286 4.66464 4.73298 4.82309 4.87090 4.97240 5.05671 5.16078 5.20394 5.30253 5.30491 5.37727 5.42741 5.52199 5.57389 5.66106 5.72314 5.81014 5.89345 5.98182 6.01761 6.14707 6.36011 6.44019 6.53877 6.60181 6.65430 7.32886 7.34510 7.39973 7.53604 7.76444 8.45193 8.55527 8.97209 9.57886 11.07569 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.004240 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.389912 B = 6602.193709 C = 7409.578664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.107 4.107 4 C -0.132 4.132 5 C 0.099 3.901 6 C -0.126 4.126 7 C -0.085 4.085 8 C 0.155 3.845 9 N -0.620 5.620 10 C 0.512 3.488 11 O -0.534 6.534 12 C -0.122 4.122 13 C 0.002 3.998 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.076 3.924 23 C 0.048 3.952 24 O -0.327 6.327 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 14.390 -18.378 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.151 4.151 5 C 0.055 3.945 6 C -0.128 4.128 7 C -0.103 4.103 8 C 0.032 3.968 9 N -0.355 5.355 10 C 0.303 3.697 11 O -0.409 6.409 12 C -0.162 4.162 13 C -0.036 4.036 14 C -0.563 4.563 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.047 4.047 23 C -0.028 4.028 24 O -0.244 6.244 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.572 13.998 -18.402 23.396 hybrid contribution -0.741 -0.459 0.154 0.885 sum -4.314 13.540 -18.249 23.129 Atomic orbital electron populations 1.20775 0.90916 1.03024 1.02250 1.20000 0.96318 0.92945 1.00335 1.20881 0.93380 0.97682 1.00587 1.21212 0.94149 0.97361 1.02369 1.18540 0.83118 0.92137 1.00739 1.20797 0.94509 0.95455 1.02003 1.20806 0.92702 0.98102 0.98712 1.20474 0.94971 0.94530 0.86810 1.48057 1.23209 1.47533 1.16675 1.21645 0.85878 0.77005 0.85217 1.90635 1.23594 1.46337 1.80318 1.21716 0.99974 1.02908 0.91555 1.19375 0.96042 0.94200 0.93956 1.21094 1.08439 1.28557 0.98249 0.90935 1.24958 0.97105 0.96143 0.94920 1.69905 1.39059 1.39119 1.06095 0.86808 0.84663 0.80720 0.77454 1.20197 1.21408 1.18571 1.22050 0.86146 0.91940 1.04598 1.23216 0.99944 0.94913 0.84705 1.86092 1.16850 1.86661 1.34769 0.91174 0.91295 0.91525 0.85708 0.85409 0.85289 0.88467 0.89739 0.89485 0.89700 0.95871 0.96239 0.92689 0.87441 0.90346 0.91722 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.07 5.89 -104.53 -0.62 -1.69 16 3 C -0.11 -1.12 9.68 -39.61 -0.38 -1.50 16 4 C -0.13 -1.49 10.00 -39.39 -0.39 -1.88 16 5 C 0.10 1.26 5.61 -39.17 -0.22 1.05 16 6 C -0.13 -1.69 5.49 -104.20 -0.57 -2.26 16 7 C -0.08 -1.09 9.37 -39.72 -0.37 -1.46 16 8 C 0.15 2.10 5.66 -4.66 -0.03 2.07 16 9 N -0.62 -9.05 2.69 -175.00 -0.47 -9.52 16 10 C 0.51 9.52 7.67 -10.99 -0.08 9.44 16 11 O -0.53 -11.80 15.41 5.56 0.09 -11.71 16 12 C -0.12 -2.35 3.94 -27.88 -0.11 -2.46 16 13 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 14 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 15 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 22 C 0.08 0.85 6.16 -4.53 -0.03 0.82 16 23 C 0.05 0.49 6.68 36.74 0.25 0.74 16 24 O -0.33 -3.99 9.90 -18.39 -0.18 -4.17 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.13 1.61 8.01 -52.48 -0.42 1.19 16 31 H 0.10 1.41 6.96 -51.93 -0.36 1.05 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.53 7.69 -51.93 -0.40 1.13 16 34 H 0.08 1.52 7.85 -51.93 -0.41 1.11 16 35 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 36 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.11 1.13 5.71 -51.93 -0.30 0.83 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -34.30 334.75 -8.16 -42.47 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.02 Total: -1.82 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.72 Total: -11.09 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.30 Total: -36.60 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.10 Total: -15.88 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.30 -8.16 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291447181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.673 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds