Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 120.02595 * 2 1 4 4 C 1.38111 * 120.35457 * 179.32256 * 3 2 1 5 5 C 1.38878 * 119.87202 * 359.16913 * 4 3 2 6 6 C 1.38715 * 119.33008 * 2.23730 * 5 4 3 7 7 C 1.37646 * 120.76736 * 357.80175 * 6 5 4 8 8 C 1.51631 * 118.41198 * 176.11394 * 6 5 4 9 9 N 1.46642 * 108.78634 * 65.40715 * 8 6 5 10 10 C 1.34773 * 119.77234 * 99.62460 * 9 8 6 11 11 O 1.21279 * 120.00182 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99770 * 180.02562 * 10 9 8 13 13 C 1.53011 * 109.46916 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.46785 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00532 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99974 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47069 * 90.00185 * 18 16 14 20 20 H 1.48497 * 109.47161 * 210.00276 * 18 16 14 21 21 H 1.48497 * 109.47095 * 330.00207 * 18 16 14 22 22 C 1.46375 * 120.45339 * 279.59162 * 9 8 6 23 23 C 1.52184 * 111.20001 * 63.74277 * 22 9 8 24 24 O 1.35566 * 120.24351 * 183.70959 * 5 4 3 25 25 H 1.09005 * 109.47024 * 90.00467 * 1 2 3 26 26 H 1.09001 * 109.47257 * 209.99803 * 1 2 3 27 27 H 1.08997 * 109.47287 * 330.00161 * 1 2 3 28 28 H 1.08002 * 119.81918 * 359.03790 * 3 2 1 29 29 H 1.07997 * 120.06582 * 179.42927 * 4 3 2 30 30 H 1.08004 * 120.15574 * 180.70314 * 7 6 5 31 31 H 1.08998 * 109.58688 * 185.19970 * 8 6 5 32 32 H 1.09001 * 109.58294 * 305.48069 * 8 6 5 33 33 H 1.09006 * 109.46721 * 299.98864 * 12 10 9 34 34 H 1.08992 * 109.47481 * 59.99452 * 12 10 9 35 35 H 1.09004 * 109.46411 * 299.99574 * 13 12 10 36 36 H 1.08997 * 109.46857 * 59.99370 * 13 12 10 37 37 H 0.97000 * 120.00239 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.13490 * 184.18460 * 22 9 8 39 39 H 1.08995 * 109.13763 * 303.29709 * 22 9 8 40 40 H 1.09000 * 109.36255 * 59.02111 * 23 22 9 41 41 H 1.09002 * 109.35764 * 178.60824 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1973 0.0000 4 6 3.5800 1.2053 0.0141 5 6 4.2784 0.0053 0.0458 6 6 3.5761 -1.1906 0.0158 7 6 2.1997 -1.1987 0.0005 8 6 4.3608 -2.4869 -0.0391 9 7 5.1177 -2.6339 1.2082 10 6 4.6453 -3.4300 2.1878 11 8 3.5974 -4.0214 2.0362 12 6 5.4187 -3.5843 3.4720 13 6 4.6689 -4.5347 4.4078 14 6 5.4426 -4.6895 5.6917 15 1 6.3760 -4.1631 5.8266 16 6 4.9590 -5.5032 6.6942 17 7 5.6343 -5.6387 7.8144 18 14 3.3442 -6.4130 6.4612 19 1 3.6079 -7.7410 5.8510 20 1 2.6845 -6.5959 7.7789 21 1 2.4567 -5.6255 5.5683 22 6 6.3830 -1.9226 1.3964 23 6 6.1728 -0.4153 1.3934 24 8 5.6311 0.0046 0.1356 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6566 2.1311 -0.0157 29 1 4.1158 2.1429 0.0047 30 1 1.6628 -2.1357 -0.0115 31 1 3.6736 -3.3256 -0.1505 32 1 5.0478 -2.4626 -0.8850 33 1 6.4061 -3.9919 3.2546 34 1 5.5247 -2.6113 3.9515 35 1 3.6817 -4.1267 4.6250 36 1 4.5626 -5.5078 3.9284 37 1 5.2942 -6.2114 8.5196 38 1 6.8220 -2.2201 2.3487 39 1 7.0664 -2.1895 0.5903 40 1 5.4824 -0.1452 2.1925 41 1 7.1278 0.0830 1.5600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291447181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -73.039559 kcal Electronic energy + Delta-G solvation = -23058.443476 eV Core-core repulsion = 19709.431761 eV Total energy + Delta-G solvation = -3349.011715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88027 -40.43170 -38.75928 -36.63045 -35.63199 -34.00999 -33.19966 -32.41447 -30.50510 -28.85993 -27.24973 -26.80438 -24.34436 -23.45718 -22.82165 -21.55914 -20.20449 -19.29396 -18.87203 -18.02955 -17.15374 -16.93022 -16.78173 -16.27588 -16.09483 -15.92773 -15.38902 -14.99247 -14.96798 -14.70258 -14.63701 -14.33537 -14.06223 -13.79843 -13.48945 -13.20078 -13.01752 -12.89260 -12.63785 -12.53378 -12.41071 -12.12896 -12.00569 -11.97867 -11.80066 -11.41217 -11.17284 -10.79367 -10.78439 -9.94471 -9.80150 -9.32205 -8.32765 -6.35473 0.10709 0.29915 1.31371 1.33626 1.48297 1.56865 1.92559 2.33526 2.40212 2.98601 3.03053 3.54221 3.65452 3.83534 3.95017 3.97115 4.10401 4.18601 4.21058 4.30805 4.38469 4.41732 4.43312 4.51441 4.61897 4.72634 4.74146 4.80245 4.82965 4.97846 5.02793 5.11710 5.27925 5.30579 5.39895 5.40444 5.49868 5.58371 5.58924 5.77016 6.20575 6.27749 6.46727 6.70398 7.12617 7.30084 8.82756 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.004240 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.389912 B = 6602.193709 C = 7409.578664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.105 4.105 4 C -0.135 4.135 5 C 0.084 3.916 6 C -0.145 4.145 7 C -0.106 4.106 8 C 0.155 3.845 9 N -0.610 5.610 10 C 0.513 3.487 11 O -0.579 6.579 12 C -0.114 4.114 13 C 0.007 3.993 14 C -0.528 4.528 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.068 3.932 23 C 0.049 3.951 24 O -0.332 6.332 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.006 0.994 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 16.103 -19.628 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.123 4.123 4 C -0.153 4.153 5 C 0.040 3.960 6 C -0.146 4.146 7 C -0.124 4.124 8 C 0.033 3.967 9 N -0.342 5.342 10 C 0.303 3.697 11 O -0.458 6.458 12 C -0.154 4.154 13 C -0.031 4.031 14 C -0.566 4.566 15 H 0.072 0.928 16 C -0.181 4.181 17 N -0.582 5.582 18 Si 0.759 3.241 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.054 4.054 23 C -0.026 4.026 24 O -0.248 6.248 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.172 0.828 29 H 0.166 0.834 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.025 0.975 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.582 15.744 -19.680 25.456 hybrid contribution -0.663 -0.902 0.506 1.228 sum -4.244 14.842 -19.174 24.616 Atomic orbital electron populations 1.20821 0.89215 1.03437 1.03346 1.20325 0.97702 0.92640 0.99487 1.21249 0.93337 0.98528 0.99160 1.21509 0.94668 0.97612 1.01544 1.18718 0.83525 0.92405 1.01325 1.20819 0.94812 0.95542 1.03450 1.20920 0.92891 0.98694 0.99925 1.20537 0.95126 0.94402 0.86643 1.48029 1.24018 1.46273 1.15922 1.21399 0.85211 0.77408 0.85668 1.90617 1.25420 1.48566 1.81208 1.21540 1.00128 1.02428 0.91260 1.19214 0.95386 0.94989 0.93535 1.21398 1.07935 1.27671 0.99592 0.92828 1.25745 1.00302 0.97246 0.94793 1.70009 1.40835 1.40332 1.07033 0.85887 0.80818 0.79667 0.77696 1.19312 1.20273 1.18894 1.22383 0.84722 0.92369 1.05972 1.23358 1.01169 0.94352 0.83735 1.86087 1.16510 1.86673 1.35560 0.89671 0.92045 0.89935 0.82753 0.83433 0.86193 0.90169 0.87886 0.87492 0.88128 0.97548 0.97341 0.92343 0.86667 0.88067 0.92988 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 2 C -0.10 -2.14 5.89 -19.80 -0.12 -2.26 16 3 C -0.10 -1.93 9.68 22.25 0.22 -1.71 16 4 C -0.14 -2.73 10.00 22.39 0.22 -2.50 16 5 C 0.08 2.03 5.61 22.54 0.13 2.16 16 6 C -0.14 -3.83 5.49 -19.59 -0.11 -3.93 16 7 C -0.11 -2.72 9.37 22.18 0.21 -2.52 16 8 C 0.16 4.16 5.66 85.90 0.49 4.64 16 9 N -0.61 -17.20 2.69 -825.96 -2.22 -19.42 16 10 C 0.51 18.96 7.67 87.66 0.67 19.63 16 11 O -0.58 -26.13 15.41 -3.03 -0.05 -26.18 16 12 C -0.11 -4.32 3.94 29.85 0.12 -4.21 16 13 C 0.01 0.34 3.33 29.85 0.10 0.44 16 14 C -0.53 -30.24 9.66 25.60 0.25 -30.00 16 15 H 0.05 3.20 7.99 -2.91 -0.02 3.17 16 16 C 0.02 1.01 5.47 84.66 0.46 1.48 16 17 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 18 Si 0.93 46.82 27.47 68.60 1.88 48.70 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.26 -13.29 6.54 99.48 0.65 -12.64 16 22 C 0.07 1.34 6.16 86.13 0.53 1.87 16 23 C 0.05 0.88 6.68 71.71 0.48 1.36 16 24 O -0.33 -7.31 9.90 -88.73 -0.88 -8.19 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 28 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.12 3.18 8.01 -2.91 -0.02 3.15 16 31 H 0.08 2.41 6.96 -2.39 -0.02 2.39 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 3.60 7.69 -2.38 -0.02 3.59 16 34 H 0.10 3.47 7.85 -2.39 -0.02 3.46 16 35 H 0.01 0.33 7.15 -2.38 -0.02 0.31 16 36 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.12 2.12 5.71 -2.39 -0.01 2.11 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.09 7.88 -2.39 -0.02 1.07 16 41 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.68 334.75 4.36 -70.32 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.96 Total: 9.63 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.36 Total: -16.59 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.92 Total: -77.71 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.93 Total: -34.37 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.88 Total: 48.70 kcal Total: -74.68 4.36 -70.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291447181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds