Wall clock time and date at job start Tue Mar 31 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.84852 * 2 1 4 4 C 1.38261 * 120.05882 * 180.34295 * 3 2 1 5 5 C 1.38576 * 119.87607 * 359.44153 * 4 3 2 6 6 C 1.39220 * 120.17465 * 0.44030 * 5 4 3 7 7 C 1.38201 * 119.85358 * 180.02562 * 2 1 3 8 8 O 1.35893 * 120.78906 * 180.16224 * 6 5 4 9 9 C 1.42949 * 117.77886 * 339.58686 * 8 6 5 10 10 H 1.09005 * 109.58343 * 289.67301 * 9 8 6 11 11 C 1.52999 * 109.57752 * 169.27944 * 9 8 6 12 12 C 1.53535 * 108.82012 * 49.47780 * 9 8 6 13 13 N 1.40545 * 120.09095 * 179.97438 * 5 4 3 14 14 C 1.34779 * 121.16315 * 346.53303 * 13 5 4 15 15 O 1.21296 * 119.99728 * 354.18944 * 14 13 5 16 16 C 1.50696 * 120.00004 * 174.19240 * 14 13 5 17 17 C 1.53001 * 109.47025 * 185.43037 * 16 14 13 18 18 C 1.50700 * 109.47535 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99340 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00458 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00186 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99953 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47128 * 89.99981 * 22 20 18 24 24 H 1.48497 * 109.47109 * 210.00165 * 22 20 18 25 25 H 1.48500 * 109.46830 * 330.00462 * 22 20 18 26 26 H 1.09001 * 109.46641 * 89.99902 * 1 2 3 27 27 H 1.08998 * 109.46711 * 210.00211 * 1 2 3 28 28 H 1.08998 * 109.46860 * 330.00036 * 1 2 3 29 29 H 1.07995 * 119.97363 * 0.07404 * 3 2 1 30 30 H 1.08001 * 120.05950 * 179.68279 * 4 3 2 31 31 H 1.07998 * 119.97256 * 359.97438 * 7 2 1 32 32 H 1.09000 * 109.47407 * 300.66116 * 11 9 8 33 33 H 1.08996 * 109.47294 * 60.66560 * 11 9 8 34 34 H 1.09006 * 109.47089 * 180.66246 * 11 9 8 35 35 H 1.09004 * 109.83428 * 182.32103 * 12 9 8 36 36 H 1.09001 * 109.88996 * 61.39360 * 12 9 8 37 37 H 1.09000 * 109.47123 * 305.42782 * 16 14 13 38 38 H 1.09002 * 109.47508 * 65.43321 * 16 14 13 39 39 H 1.09004 * 109.47244 * 300.00262 * 17 16 14 40 40 H 1.09002 * 109.46746 * 59.99817 * 17 16 14 41 41 H 0.97008 * 119.99966 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5779 1.2045 -0.0072 5 6 4.2726 0.0054 -0.0026 6 6 3.5820 -1.2034 -0.0001 7 6 2.1950 -1.1986 -0.0005 8 8 4.2507 -2.3865 0.0076 9 6 5.6121 -2.3851 -0.4281 10 1 5.6512 -2.2143 -1.5040 11 6 6.2579 -3.7319 -0.0964 12 6 6.3638 -1.2611 0.2990 13 7 5.6780 0.0053 -0.0104 14 6 6.3740 1.1250 -0.2907 15 8 5.7916 2.1284 -0.6447 16 6 7.8756 1.1302 -0.1643 17 6 8.4028 2.5461 -0.4057 18 6 9.9045 2.5515 -0.2787 19 1 10.4301 1.6366 -0.0484 20 6 10.6071 3.7245 -0.4555 21 7 11.9175 3.7293 -0.3442 22 14 9.6977 5.3071 -0.8531 23 1 9.3395 6.0027 0.4090 24 1 10.5695 6.1864 -1.6728 25 1 8.4610 4.9901 -1.6117 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6524 2.1330 0.0012 30 1 4.1154 2.1412 -0.0123 31 1 1.6522 -2.1323 -0.0005 32 1 6.2118 -3.9019 0.9793 33 1 5.7230 -4.5285 -0.6134 34 1 7.2992 -3.7248 -0.4188 35 1 7.3950 -1.2186 -0.0518 36 1 6.3460 -1.4383 1.3743 37 1 8.1571 0.8034 0.8367 38 1 8.3048 0.4521 -0.9020 39 1 8.1213 2.8729 -1.4068 40 1 7.9737 3.2242 0.3320 41 1 12.4118 4.5546 -0.4689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291478587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:10 Heat of formation + Delta-G solvation = -47.864461 kcal Electronic energy + Delta-G solvation = -22953.603985 eV Core-core repulsion = 19605.683944 eV Total energy + Delta-G solvation = -3347.920041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37013 -39.08524 -38.04497 -35.41312 -33.78103 -33.15920 -31.82818 -31.00184 -29.74348 -27.36169 -26.85074 -25.40559 -23.13541 -22.69599 -21.49896 -20.35711 -19.09546 -17.99570 -17.44631 -16.98440 -16.37081 -15.97848 -15.59091 -15.08371 -14.40638 -14.34092 -14.09427 -13.88998 -13.71982 -13.61794 -13.27931 -12.96210 -12.79822 -12.56310 -12.55850 -12.31582 -12.02131 -11.73380 -11.59825 -11.47244 -11.24666 -11.04642 -10.80202 -10.25668 -10.12474 -10.00612 -9.83326 -9.28038 -9.16527 -8.57459 -8.45262 -7.68711 -6.09412 -4.09113 1.25202 1.40549 2.67683 2.80394 3.06812 3.33219 3.40352 3.50152 3.79202 4.24137 4.44993 4.52470 4.65152 4.69790 4.87540 4.98093 5.01745 5.10337 5.25862 5.26796 5.32728 5.34363 5.40861 5.47367 5.56658 5.59961 5.76011 5.79468 5.87056 5.88958 5.93709 6.21592 6.27198 6.50930 6.52513 6.62150 6.87961 7.23167 7.29655 7.31835 7.37465 7.70087 8.26651 8.44782 8.92182 9.53069 11.03194 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004251 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.973166 B = 6584.908301 C = 7953.636550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.113 4.113 5 C 0.084 3.916 6 C 0.092 3.908 7 C -0.130 4.130 8 O -0.312 6.312 9 C 0.074 3.926 10 H 0.078 0.922 11 C -0.143 4.143 12 C 0.070 3.930 13 N -0.566 5.566 14 C 0.515 3.485 15 O -0.512 6.512 16 C -0.119 4.119 17 C 0.001 3.999 18 C -0.527 4.527 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.901 5.901 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.261 1.261 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.166 0.834 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -14.125 1.249 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.010 4.010 6 C 0.045 3.955 7 C -0.149 4.149 8 O -0.226 6.226 9 C 0.017 3.983 10 H 0.096 0.904 11 C -0.201 4.201 12 C -0.053 4.053 13 N -0.292 5.292 14 C 0.307 3.693 15 O -0.387 6.387 16 C -0.159 4.159 17 C -0.036 4.036 18 C -0.565 4.565 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.185 1.185 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.183 0.817 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.633 -13.615 1.092 23.103 hybrid contribution -0.074 0.907 -0.208 0.934 sum -18.707 -12.708 0.884 22.632 Atomic orbital electron populations 1.20729 0.90934 1.02622 1.02198 1.19638 0.95947 0.92300 1.00600 1.20950 0.93597 0.97492 1.02741 1.21840 0.94213 0.98617 0.98614 1.18102 0.83073 0.93915 1.05944 1.18494 0.91485 0.83022 1.02504 1.20161 0.90100 0.98469 1.06199 1.86001 1.25538 1.28719 1.82389 1.22801 0.80228 0.96645 0.98617 0.90442 1.21766 1.00726 0.94155 1.03427 1.22764 0.98468 0.82416 1.01605 1.46084 1.03707 1.11344 1.68073 1.21818 0.91564 0.81070 0.74806 1.90507 1.70931 1.32932 1.44324 1.21757 0.86790 1.03868 1.03462 1.19403 0.96591 0.89888 0.97762 1.21048 0.89414 0.96867 1.49168 0.90872 1.24957 0.94703 0.99040 0.94409 1.69904 1.06190 1.27885 1.50015 0.86808 0.80365 0.83380 0.79104 1.20179 1.21328 1.18519 0.91298 0.91678 0.91514 0.85705 0.81719 0.85220 0.91092 0.90970 0.89690 0.86880 0.89456 0.89256 0.89098 0.95512 0.96249 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.00 36.01 0.36 -0.54 16 2 C -0.08 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.13 -1.71 9.69 -39.56 -0.38 -2.10 16 4 C -0.11 -1.82 8.94 -39.45 -0.35 -2.17 16 5 C 0.08 1.34 6.33 -83.37 -0.53 0.81 16 6 C 0.09 1.31 6.52 -39.04 -0.25 1.05 16 7 C -0.13 -1.62 9.62 -39.42 -0.38 -2.00 16 8 O -0.31 -4.03 9.97 -19.40 -0.19 -4.22 16 9 C 0.07 0.79 3.59 -26.45 -0.09 0.69 16 10 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.14 -1.04 9.58 37.16 0.36 -0.69 16 12 C 0.07 0.82 5.69 -3.33 -0.02 0.80 16 13 N -0.57 -8.87 3.01 -112.34 -0.34 -9.21 16 14 C 0.52 9.55 7.59 -10.99 -0.08 9.46 16 15 O -0.51 -11.00 12.85 5.54 0.07 -10.93 16 16 C -0.12 -2.24 4.12 -27.88 -0.11 -2.35 16 17 C 0.00 0.03 3.35 -27.88 -0.09 -0.06 16 18 C -0.53 -14.70 9.66 -34.44 -0.33 -15.03 16 19 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 22 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.17 3.00 5.16 -52.58 -0.27 2.72 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 1.14 6.43 -51.93 -0.33 0.80 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 38 H 0.09 1.55 7.62 -51.93 -0.40 1.15 16 39 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 40 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -33.41 333.42 -7.95 -41.37 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.99 Total: -1.07 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.63 Total: -11.77 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.44 Total: -35.92 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.12 Total: -15.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.41 -7.95 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291478587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.497 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds