Wall clock time and date at job start Tue Mar 31 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.84852 * 2 1 4 4 C 1.38261 * 120.05882 * 180.34295 * 3 2 1 5 5 C 1.38576 * 119.87607 * 359.44153 * 4 3 2 6 6 C 1.39220 * 120.17465 * 0.44030 * 5 4 3 7 7 C 1.38201 * 119.85358 * 180.02562 * 2 1 3 8 8 O 1.35893 * 120.78906 * 180.16224 * 6 5 4 9 9 C 1.42949 * 117.77886 * 339.58686 * 8 6 5 10 10 H 1.09005 * 109.58343 * 289.67301 * 9 8 6 11 11 C 1.52999 * 109.57752 * 169.27944 * 9 8 6 12 12 C 1.53535 * 108.82012 * 49.47780 * 9 8 6 13 13 N 1.40545 * 120.09095 * 179.97438 * 5 4 3 14 14 C 1.34779 * 121.16315 * 346.53303 * 13 5 4 15 15 O 1.21296 * 119.99728 * 354.18944 * 14 13 5 16 16 C 1.50696 * 120.00004 * 174.19240 * 14 13 5 17 17 C 1.53001 * 109.47025 * 185.43037 * 16 14 13 18 18 C 1.50700 * 109.47535 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99340 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00458 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00186 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99953 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47128 * 89.99981 * 22 20 18 24 24 H 1.48497 * 109.47109 * 210.00165 * 22 20 18 25 25 H 1.48500 * 109.46830 * 330.00462 * 22 20 18 26 26 H 1.09001 * 109.46641 * 89.99902 * 1 2 3 27 27 H 1.08998 * 109.46711 * 210.00211 * 1 2 3 28 28 H 1.08998 * 109.46860 * 330.00036 * 1 2 3 29 29 H 1.07995 * 119.97363 * 0.07404 * 3 2 1 30 30 H 1.08001 * 120.05950 * 179.68279 * 4 3 2 31 31 H 1.07998 * 119.97256 * 359.97438 * 7 2 1 32 32 H 1.09000 * 109.47407 * 300.66116 * 11 9 8 33 33 H 1.08996 * 109.47294 * 60.66560 * 11 9 8 34 34 H 1.09006 * 109.47089 * 180.66246 * 11 9 8 35 35 H 1.09004 * 109.83428 * 182.32103 * 12 9 8 36 36 H 1.09001 * 109.88996 * 61.39360 * 12 9 8 37 37 H 1.09000 * 109.47123 * 305.42782 * 16 14 13 38 38 H 1.09002 * 109.47508 * 65.43321 * 16 14 13 39 39 H 1.09004 * 109.47244 * 300.00262 * 17 16 14 40 40 H 1.09002 * 109.46746 * 59.99817 * 17 16 14 41 41 H 0.97008 * 119.99966 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5779 1.2045 -0.0072 5 6 4.2726 0.0054 -0.0026 6 6 3.5820 -1.2034 -0.0001 7 6 2.1950 -1.1986 -0.0005 8 8 4.2507 -2.3865 0.0076 9 6 5.6121 -2.3851 -0.4281 10 1 5.6512 -2.2143 -1.5040 11 6 6.2579 -3.7319 -0.0964 12 6 6.3638 -1.2611 0.2990 13 7 5.6780 0.0053 -0.0104 14 6 6.3740 1.1250 -0.2907 15 8 5.7916 2.1284 -0.6447 16 6 7.8756 1.1302 -0.1643 17 6 8.4028 2.5461 -0.4057 18 6 9.9045 2.5515 -0.2787 19 1 10.4301 1.6366 -0.0484 20 6 10.6071 3.7245 -0.4555 21 7 11.9175 3.7293 -0.3442 22 14 9.6977 5.3071 -0.8531 23 1 9.3395 6.0027 0.4090 24 1 10.5695 6.1864 -1.6728 25 1 8.4610 4.9901 -1.6117 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6524 2.1330 0.0012 30 1 4.1154 2.1412 -0.0123 31 1 1.6522 -2.1323 -0.0005 32 1 6.2118 -3.9019 0.9793 33 1 5.7230 -4.5285 -0.6134 34 1 7.2992 -3.7248 -0.4188 35 1 7.3950 -1.2186 -0.0518 36 1 6.3460 -1.4383 1.3743 37 1 8.1571 0.8034 0.8367 38 1 8.3048 0.4521 -0.9020 39 1 8.1213 2.8729 -1.4068 40 1 7.9737 3.2242 0.3320 41 1 12.4118 4.5546 -0.4689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291478587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:10 Heat of formation + Delta-G solvation = -67.887700 kcal Electronic energy + Delta-G solvation = -22954.472258 eV Core-core repulsion = 19605.683944 eV Total energy + Delta-G solvation = -3348.788314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48356 -40.36828 -39.00642 -36.62981 -35.68554 -34.13992 -33.46523 -32.28411 -30.70655 -28.77912 -27.82125 -26.77190 -24.08515 -23.84059 -23.06614 -21.56807 -20.38327 -19.23279 -18.97393 -18.31160 -17.66167 -17.16333 -16.90347 -16.28851 -16.03790 -15.62946 -15.29862 -15.05899 -14.87312 -14.75404 -14.64483 -14.19831 -14.07424 -13.66651 -13.41965 -13.26502 -13.06277 -13.00796 -12.86297 -12.60941 -12.45280 -12.29292 -12.10493 -12.01101 -11.82389 -11.70713 -11.43300 -11.09209 -10.80486 -10.54212 -9.50680 -8.78385 -8.33780 -6.36903 0.16748 0.34585 1.31145 1.33851 1.45099 1.47860 1.52879 2.14710 2.32561 2.73564 3.02044 3.33639 3.37651 3.73837 3.85376 3.93466 4.02530 4.13473 4.19111 4.27146 4.32584 4.36509 4.43007 4.52447 4.63333 4.81325 4.84550 4.88860 4.90673 5.00438 5.10722 5.15048 5.24770 5.26245 5.28763 5.35929 5.50864 5.56218 5.61444 5.83882 6.07428 6.20506 6.34393 6.68714 6.92045 7.28626 8.81591 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004251 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.973166 B = 6584.908301 C = 7953.636550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.074 4.074 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.053 3.947 6 C 0.088 3.912 7 C -0.133 4.133 8 O -0.315 6.315 9 C 0.072 3.928 10 H 0.072 0.928 11 C -0.136 4.136 12 C 0.062 3.938 13 N -0.562 5.562 14 C 0.514 3.486 15 O -0.552 6.552 16 C -0.110 4.110 17 C 0.006 3.994 18 C -0.528 4.528 19 H 0.054 0.946 20 C 0.017 3.983 21 N -0.941 5.941 22 Si 0.935 3.065 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.012 0.988 40 H 0.009 0.991 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.612 -15.794 1.390 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.040 4.040 6 C 0.041 3.959 7 C -0.152 4.152 8 O -0.230 6.230 9 C 0.016 3.984 10 H 0.090 0.910 11 C -0.194 4.194 12 C -0.060 4.060 13 N -0.287 5.287 14 C 0.307 3.693 15 O -0.430 6.430 16 C -0.149 4.149 17 C -0.032 4.032 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.182 4.182 21 N -0.582 5.582 22 Si 0.759 3.241 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.173 0.827 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.031 0.969 40 H 0.027 0.973 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.719 -15.334 1.246 25.806 hybrid contribution 0.513 1.317 -0.231 1.432 sum -20.206 -14.017 1.015 24.613 Atomic orbital electron populations 1.20817 0.87991 1.04077 1.03414 1.20062 0.97958 0.91347 0.98122 1.21183 0.92628 0.99139 1.02514 1.21746 0.95584 0.97870 1.00512 1.18292 0.83088 0.94658 1.07998 1.18711 0.92281 0.82775 1.02114 1.20567 0.89585 0.99807 1.05200 1.86009 1.26608 1.27992 1.82359 1.23031 0.79248 0.97975 0.98180 0.90955 1.21800 1.01497 0.92113 1.03946 1.23121 0.99191 0.81003 1.02647 1.46005 1.04044 1.11681 1.66964 1.21607 0.91350 0.81493 0.74874 1.90507 1.71497 1.34587 1.46455 1.21565 0.87353 1.00875 1.05135 1.19237 0.94260 0.93194 0.96534 1.21358 0.91256 0.96085 1.47888 0.92730 1.25749 0.95393 1.02351 0.94661 1.70010 1.07582 1.28942 1.51618 0.85885 0.79115 0.79880 0.79190 1.19394 1.20337 1.18669 0.90018 0.89934 0.90441 0.84092 0.84446 0.82732 0.90561 0.90220 0.87799 0.85260 0.88320 0.87474 0.87131 0.96942 0.97280 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.00 71.24 0.71 -0.69 16 2 C -0.07 -1.58 5.88 -19.86 -0.12 -1.70 16 3 C -0.14 -3.52 9.69 22.29 0.22 -3.31 16 4 C -0.14 -4.54 8.94 22.36 0.20 -4.34 16 5 C 0.05 1.70 6.33 38.06 0.24 1.94 16 6 C 0.09 2.40 6.52 22.62 0.15 2.55 16 7 C -0.13 -3.01 9.62 22.37 0.22 -2.79 16 8 O -0.31 -7.54 9.97 -92.35 -0.92 -8.46 16 9 C 0.07 1.40 3.59 30.77 0.11 1.51 16 10 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 11 C -0.14 -1.60 9.58 71.98 0.69 -0.91 16 12 C 0.06 1.34 5.69 86.41 0.49 1.83 16 13 N -0.56 -17.51 3.01 -627.71 -1.89 -19.40 16 14 C 0.51 19.31 7.59 87.66 0.67 19.98 16 15 O -0.55 -24.64 12.85 -3.08 -0.04 -24.68 16 16 C -0.11 -4.09 4.12 29.85 0.12 -3.97 16 17 C 0.01 0.28 3.35 29.85 0.10 0.38 16 18 C -0.53 -29.77 9.66 25.60 0.25 -29.53 16 19 H 0.05 3.21 7.99 -2.91 -0.02 3.18 16 20 C 0.02 0.97 5.47 84.65 0.46 1.43 16 21 N -0.94 -58.11 13.96 21.44 0.30 -57.81 16 22 Si 0.93 46.26 27.47 68.60 1.88 48.14 16 23 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.26 -12.95 6.54 99.48 0.65 -12.30 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.14 5.32 5.16 -4.34 -0.02 5.30 16 31 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.13 2.33 6.43 -2.38 -0.02 2.32 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.11 3.58 8.09 -2.39 -0.02 3.56 16 38 H 0.11 3.64 7.62 -2.39 -0.02 3.63 16 39 H 0.01 0.63 7.10 -2.38 -0.02 0.61 16 40 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 41 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -73.77 333.42 4.80 -68.98 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.96 Total: 10.84 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.51 Total: -17.61 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.59 Total: -77.21 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.96 Total: -33.14 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -73.77 4.80 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291478587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.090 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds