Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38276 * 119.85303 * 2 1 4 4 C 1.38258 * 120.06406 * 179.87974 * 3 2 1 5 5 C 1.38578 * 119.87503 * 0.02562 * 4 3 2 6 6 C 1.39210 * 120.17569 * 0.14617 * 5 4 3 7 7 C 1.38208 * 119.85340 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.79976 * 179.53364 * 6 5 4 9 9 C 1.42953 * 117.76570 * 20.34714 * 8 6 5 10 10 H 1.09001 * 109.58307 * 70.44481 * 9 8 6 11 11 C 1.53002 * 109.57979 * 190.71192 * 9 8 6 12 12 C 1.53902 * 108.70027 * 310.38324 * 9 8 6 13 13 N 1.40553 * 120.09432 * 180.16406 * 5 4 3 14 14 C 1.34772 * 121.15494 * 13.77569 * 13 5 4 15 15 O 1.21300 * 120.00540 * 5.80924 * 14 13 5 16 16 C 1.50705 * 119.99789 * 185.80339 * 14 13 5 17 17 C 1.53006 * 109.47085 * 174.57351 * 16 14 13 18 18 C 1.50695 * 109.47080 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99895 * 179.72161 * 18 17 16 21 21 N 1.31509 * 120.00403 * 0.28077 * 20 18 17 22 22 Si 1.86808 * 119.99820 * 180.27450 * 20 18 17 23 23 H 1.48489 * 109.46857 * 60.00686 * 22 20 18 24 24 H 1.48505 * 109.46672 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47336 * 300.00167 * 22 20 18 26 26 H 1.09001 * 109.47208 * 89.99961 * 1 2 3 27 27 H 1.08999 * 109.47110 * 210.00538 * 1 2 3 28 28 H 1.09004 * 109.47051 * 330.00149 * 1 2 3 29 29 H 1.08001 * 119.96935 * 359.89368 * 3 2 1 30 30 H 1.07992 * 120.06553 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.97184 * 0.03962 * 7 2 1 32 32 H 1.08994 * 109.47152 * 60.00321 * 11 9 8 33 33 H 1.09006 * 109.47133 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47137 * 299.99963 * 11 9 8 35 35 H 1.09001 * 110.00342 * 298.94394 * 12 9 8 36 36 H 1.09008 * 109.86022 * 177.86169 * 12 9 8 37 37 H 1.08997 * 109.46984 * 54.57662 * 16 14 13 38 38 H 1.08998 * 109.46948 * 294.57156 * 16 14 13 39 39 H 1.08997 * 109.46955 * 60.00294 * 17 16 14 40 40 H 1.09002 * 109.46813 * 300.00179 * 17 16 14 41 41 H 0.97003 * 120.00443 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1993 0.0000 4 6 3.5778 1.2044 0.0025 5 6 4.2725 0.0053 0.0045 6 6 3.5820 -1.2035 0.0009 7 6 2.1949 -1.1987 0.0005 8 8 4.2504 -2.3867 -0.0067 9 6 5.6119 -2.3852 0.4290 10 1 5.6509 -2.2163 1.5051 11 6 6.2577 -3.7322 0.0977 12 6 6.3635 -1.2601 -0.3043 13 7 5.6780 0.0051 0.0105 14 6 6.3742 1.1249 0.2891 15 8 5.7924 2.1287 0.6431 16 6 7.8758 1.1300 0.1610 17 6 8.4033 2.5461 0.4007 18 6 9.9047 2.5514 0.2719 19 1 10.4302 1.6364 0.0417 20 6 10.6071 3.7256 0.4419 21 7 9.9673 4.8400 0.7218 22 14 12.4677 3.7336 0.2747 23 1 12.8439 3.2849 -1.0899 24 1 12.9792 5.1090 0.5026 25 1 13.0589 2.8133 1.2790 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6523 2.1329 -0.0017 30 1 4.1154 2.1410 0.0029 31 1 1.6521 -2.1323 0.0003 32 1 6.2221 -3.8972 -0.9791 33 1 7.2955 -3.7293 0.4311 34 1 5.7155 -4.5297 0.6057 35 1 6.3404 -1.4356 -1.3799 36 1 7.3961 -1.2174 0.0422 37 1 8.1561 0.8026 -0.8402 38 1 8.3057 0.4525 0.8986 39 1 8.1230 2.8736 1.4018 40 1 7.9733 3.2237 -0.3370 41 1 10.4615 5.6660 0.8417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291478590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -50.800924 kcal Electronic energy + Delta-G solvation = -22883.657907 eV Core-core repulsion = 19535.610531 eV Total energy + Delta-G solvation = -3348.047375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28291 -38.96585 -37.97736 -35.30855 -33.71747 -33.11297 -31.72592 -30.73808 -29.67804 -27.15061 -26.68832 -25.22021 -23.10185 -22.67616 -21.71689 -20.37065 -18.99055 -17.90981 -17.32022 -16.77526 -16.17878 -15.80792 -15.44646 -15.03173 -14.53781 -14.26747 -14.18233 -13.83374 -13.62615 -13.48833 -13.25792 -12.88239 -12.67686 -12.45839 -12.28303 -12.21225 -11.92076 -11.65733 -11.52095 -11.28462 -11.11268 -10.96869 -10.75238 -10.67669 -10.07378 -9.91777 -9.69840 -9.23188 -9.02562 -8.39487 -8.37406 -7.60871 -6.02284 -4.07531 1.32769 1.47334 2.76629 2.93050 3.12601 3.30388 3.35569 3.36843 3.86298 4.28380 4.40667 4.61550 4.69867 4.74602 4.93554 5.04290 5.09406 5.16292 5.32647 5.32893 5.37634 5.39393 5.46171 5.52442 5.59999 5.67761 5.80739 5.82680 5.97789 6.02181 6.04144 6.30415 6.34591 6.58932 6.68591 6.73622 6.95638 7.39204 7.45892 7.65317 7.74675 7.97918 8.27387 8.45238 8.99607 9.56465 11.08539 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021313 B = 0.003857 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.417972 B = 7257.410637 C = 8491.998466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 C -0.128 4.128 4 C -0.112 4.112 5 C 0.085 3.915 6 C 0.090 3.910 7 C -0.130 4.130 8 O -0.312 6.312 9 C 0.074 3.926 10 H 0.078 0.922 11 C -0.143 4.143 12 C 0.072 3.928 13 N -0.568 5.568 14 C 0.514 3.486 15 O -0.506 6.506 16 C -0.127 4.127 17 C 0.037 3.963 18 C -0.530 4.530 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.888 5.888 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.166 0.834 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -16.310 -2.155 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.009 4.009 6 C 0.043 3.957 7 C -0.149 4.149 8 O -0.227 6.227 9 C 0.017 3.983 10 H 0.096 0.904 11 C -0.201 4.201 12 C -0.051 4.051 13 N -0.294 5.294 14 C 0.307 3.693 15 O -0.380 6.380 16 C -0.166 4.166 17 C 0.000 4.000 18 C -0.568 4.568 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.183 0.817 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.056 -15.708 -1.966 21.170 hybrid contribution 1.258 0.120 -0.056 1.264 sum -12.798 -15.588 -2.022 20.270 Atomic orbital electron populations 1.20722 0.90975 1.02598 1.02140 1.19628 0.95913 0.92314 1.00784 1.20952 0.93613 0.97480 1.02653 1.21851 0.94204 0.98675 0.98498 1.18112 0.83180 0.93878 1.05719 1.18490 0.91473 0.83011 1.02733 1.20150 0.90089 0.98422 1.06275 1.85995 1.25512 1.28771 1.82433 1.22869 0.80284 0.96592 0.98593 0.90437 1.21764 1.00670 0.94257 1.03368 1.22797 0.98424 0.82531 1.01344 1.46153 1.03633 1.11415 1.68246 1.21860 0.91590 0.81004 0.74880 1.90526 1.70861 1.32734 1.43852 1.21959 0.86898 1.05120 1.02669 1.18928 0.95054 0.87520 0.98523 1.21127 0.91740 0.94677 1.49304 0.92598 1.25016 0.98513 0.95597 0.95135 1.69976 1.35712 0.99338 1.47633 0.86635 0.85503 0.77117 0.78586 1.20206 1.21227 1.20208 0.91329 0.91749 0.91515 0.85689 0.81665 0.85296 0.91145 0.89788 0.91010 0.89589 0.87030 0.89894 0.89752 0.95515 0.95798 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.00 0.36 -0.58 16 2 C -0.09 -1.05 5.88 -104.62 -0.61 -1.67 16 3 C -0.13 -1.79 9.69 -39.56 -0.38 -2.17 16 4 C -0.11 -1.90 8.94 -39.45 -0.35 -2.26 16 5 C 0.09 1.42 6.32 -83.37 -0.53 0.89 16 6 C 0.09 1.33 6.51 -39.05 -0.25 1.07 16 7 C -0.13 -1.69 9.62 -39.42 -0.38 -2.07 16 8 O -0.31 -4.17 9.97 -19.42 -0.19 -4.36 16 9 C 0.07 0.81 3.60 -26.26 -0.09 0.72 16 10 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.14 -1.07 9.58 37.16 0.36 -0.72 16 12 C 0.07 0.87 5.72 -3.14 -0.02 0.85 16 13 N -0.57 -9.32 3.01 -112.13 -0.34 -9.66 16 14 C 0.51 10.10 7.59 -10.99 -0.08 10.01 16 15 O -0.51 -11.60 12.86 5.54 0.07 -11.53 16 16 C -0.13 -2.50 4.11 -27.88 -0.11 -2.62 16 17 C 0.04 0.98 4.28 -27.88 -0.12 0.86 16 18 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.17 3.18 5.17 -52.56 -0.27 2.91 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.17 6.43 -51.92 -0.33 0.83 16 37 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 38 H 0.08 1.49 7.63 -51.93 -0.40 1.10 16 39 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -33.33 337.06 -8.33 -41.66 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.02 Total: -0.19 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.64 Total: -11.05 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.40 Total: -35.86 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.12 Total: -15.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.33 -8.33 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291478590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.143 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds