Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38276 * 119.85303 * 2 1 4 4 C 1.38258 * 120.06406 * 179.87974 * 3 2 1 5 5 C 1.38578 * 119.87503 * 0.02562 * 4 3 2 6 6 C 1.39210 * 120.17569 * 0.14617 * 5 4 3 7 7 C 1.38208 * 119.85340 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.79976 * 179.53364 * 6 5 4 9 9 C 1.42953 * 117.76570 * 20.34714 * 8 6 5 10 10 H 1.09001 * 109.58307 * 70.44481 * 9 8 6 11 11 C 1.53002 * 109.57979 * 190.71192 * 9 8 6 12 12 C 1.53902 * 108.70027 * 310.38324 * 9 8 6 13 13 N 1.40553 * 120.09432 * 180.16406 * 5 4 3 14 14 C 1.34772 * 121.15494 * 13.77569 * 13 5 4 15 15 O 1.21300 * 120.00540 * 5.80924 * 14 13 5 16 16 C 1.50705 * 119.99789 * 185.80339 * 14 13 5 17 17 C 1.53006 * 109.47085 * 174.57351 * 16 14 13 18 18 C 1.50695 * 109.47080 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99895 * 179.72161 * 18 17 16 21 21 N 1.31509 * 120.00403 * 0.28077 * 20 18 17 22 22 Si 1.86808 * 119.99820 * 180.27450 * 20 18 17 23 23 H 1.48489 * 109.46857 * 60.00686 * 22 20 18 24 24 H 1.48505 * 109.46672 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47336 * 300.00167 * 22 20 18 26 26 H 1.09001 * 109.47208 * 89.99961 * 1 2 3 27 27 H 1.08999 * 109.47110 * 210.00538 * 1 2 3 28 28 H 1.09004 * 109.47051 * 330.00149 * 1 2 3 29 29 H 1.08001 * 119.96935 * 359.89368 * 3 2 1 30 30 H 1.07992 * 120.06553 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.97184 * 0.03962 * 7 2 1 32 32 H 1.08994 * 109.47152 * 60.00321 * 11 9 8 33 33 H 1.09006 * 109.47133 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47137 * 299.99963 * 11 9 8 35 35 H 1.09001 * 110.00342 * 298.94394 * 12 9 8 36 36 H 1.09008 * 109.86022 * 177.86169 * 12 9 8 37 37 H 1.08997 * 109.46984 * 54.57662 * 16 14 13 38 38 H 1.08998 * 109.46948 * 294.57156 * 16 14 13 39 39 H 1.08997 * 109.46955 * 60.00294 * 17 16 14 40 40 H 1.09002 * 109.46813 * 300.00179 * 17 16 14 41 41 H 0.97003 * 120.00443 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1993 0.0000 4 6 3.5778 1.2044 0.0025 5 6 4.2725 0.0053 0.0045 6 6 3.5820 -1.2035 0.0009 7 6 2.1949 -1.1987 0.0005 8 8 4.2504 -2.3867 -0.0067 9 6 5.6119 -2.3852 0.4290 10 1 5.6509 -2.2163 1.5051 11 6 6.2577 -3.7322 0.0977 12 6 6.3635 -1.2601 -0.3043 13 7 5.6780 0.0051 0.0105 14 6 6.3742 1.1249 0.2891 15 8 5.7924 2.1287 0.6431 16 6 7.8758 1.1300 0.1610 17 6 8.4033 2.5461 0.4007 18 6 9.9047 2.5514 0.2719 19 1 10.4302 1.6364 0.0417 20 6 10.6071 3.7256 0.4419 21 7 9.9673 4.8400 0.7218 22 14 12.4677 3.7336 0.2747 23 1 12.8439 3.2849 -1.0899 24 1 12.9792 5.1090 0.5026 25 1 13.0589 2.8133 1.2790 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6523 2.1329 -0.0017 30 1 4.1154 2.1410 0.0029 31 1 1.6521 -2.1323 0.0003 32 1 6.2221 -3.8972 -0.9791 33 1 7.2955 -3.7293 0.4311 34 1 5.7155 -4.5297 0.6057 35 1 6.3404 -1.4356 -1.3799 36 1 7.3961 -1.2174 0.0422 37 1 8.1561 0.8026 -0.8402 38 1 8.3057 0.4525 0.8986 39 1 8.1230 2.8736 1.4018 40 1 7.9733 3.2237 -0.3370 41 1 10.4615 5.6660 0.8417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291478590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = -70.912923 kcal Electronic energy + Delta-G solvation = -22884.530028 eV Core-core repulsion = 19535.610531 eV Total energy + Delta-G solvation = -3348.919497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46205 -40.33946 -38.99764 -36.60772 -35.68948 -34.10907 -33.26174 -32.17033 -30.69481 -28.50499 -27.78318 -26.74953 -24.20496 -23.89714 -23.26463 -21.57842 -20.33377 -19.02388 -18.88547 -18.15702 -17.60220 -17.14043 -16.84839 -16.49067 -16.06911 -15.57221 -15.25360 -15.03357 -14.82262 -14.65924 -14.29117 -14.16640 -14.01388 -13.64534 -13.35407 -13.17396 -13.05457 -12.90209 -12.78209 -12.59934 -12.52946 -12.43496 -12.24555 -11.98841 -11.71632 -11.63794 -11.34422 -11.08265 -10.58015 -10.51758 -9.50446 -8.77730 -8.19785 -6.34340 0.17459 0.34394 1.41737 1.46279 1.48436 1.53330 1.56272 2.15360 2.41610 2.73668 3.13595 3.35890 3.40901 3.75194 3.86982 3.95286 4.02857 4.15784 4.22926 4.28030 4.36694 4.41640 4.44689 4.53468 4.64621 4.82260 4.89261 4.90961 4.91743 5.01431 5.11195 5.16965 5.25880 5.29262 5.44922 5.52015 5.55726 5.61546 5.80398 5.84149 6.09365 6.13690 6.34837 6.82354 6.97370 7.36204 8.92690 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021313 B = 0.003857 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.417972 B = 7257.410637 C = 8491.998466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.074 4.074 3 C -0.136 4.136 4 C -0.139 4.139 5 C 0.054 3.946 6 C 0.089 3.911 7 C -0.131 4.131 8 O -0.314 6.314 9 C 0.071 3.929 10 H 0.072 0.928 11 C -0.135 4.135 12 C 0.062 3.938 13 N -0.563 5.563 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.112 4.112 17 C 0.044 3.956 18 C -0.544 4.544 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.112 0.888 39 H -0.015 1.015 40 H -0.018 1.018 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 -19.762 -2.776 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.040 4.040 6 C 0.042 3.958 7 C -0.150 4.150 8 O -0.229 6.229 9 C 0.015 3.985 10 H 0.090 0.910 11 C -0.193 4.193 12 C -0.059 4.059 13 N -0.288 5.288 14 C 0.303 3.697 15 O -0.433 6.433 16 C -0.151 4.151 17 C 0.006 3.994 18 C -0.582 4.582 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.215 1.215 25 H -0.186 1.186 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.003 0.997 40 H 0.001 0.999 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.915 -19.236 -2.604 23.884 hybrid contribution 1.073 1.159 0.135 1.585 sum -12.841 -18.077 -2.469 22.311 Atomic orbital electron populations 1.20814 0.87881 1.04007 1.03529 1.20062 0.98008 0.91275 0.98157 1.21167 0.92536 0.99213 1.02585 1.21709 0.95677 0.97848 1.00700 1.18302 0.83225 0.94635 1.07869 1.18692 0.92281 0.82696 1.02142 1.20576 0.89536 0.99790 1.05100 1.86006 1.26661 1.27850 1.82360 1.23125 0.79228 0.98058 0.98119 0.91015 1.21801 1.01524 0.91967 1.03967 1.23204 0.99284 0.80853 1.02515 1.46059 1.03979 1.11771 1.67023 1.21767 0.91647 0.81431 0.74863 1.90531 1.71609 1.34811 1.46359 1.21708 0.87186 1.01336 1.04890 1.18693 0.95141 0.90748 0.94821 1.21642 0.92367 0.95614 1.48529 0.90264 1.26137 1.04547 0.95097 0.94576 1.70167 1.38154 1.00245 1.49140 0.85367 0.78209 0.77173 0.79464 1.18612 1.21507 1.18564 0.89759 0.89891 0.90638 0.84262 0.85025 0.82514 0.90516 0.87656 0.90256 0.88286 0.85096 0.87359 0.86981 0.99687 0.99942 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.00 71.23 0.71 -0.81 16 2 C -0.07 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.14 -3.86 9.69 22.28 0.22 -3.64 16 4 C -0.14 -5.02 8.94 22.36 0.20 -4.82 16 5 C 0.05 1.83 6.32 38.06 0.24 2.07 16 6 C 0.09 2.54 6.51 22.62 0.15 2.69 16 7 C -0.13 -3.12 9.62 22.37 0.22 -2.91 16 8 O -0.31 -7.76 9.97 -92.40 -0.92 -8.68 16 9 C 0.07 1.42 3.60 30.90 0.11 1.53 16 10 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 11 C -0.14 -1.57 9.58 71.98 0.69 -0.88 16 12 C 0.06 1.41 5.72 86.53 0.49 1.90 16 13 N -0.56 -18.77 3.01 -627.04 -1.89 -20.66 16 14 C 0.51 21.02 7.59 87.66 0.67 21.68 16 15 O -0.56 -27.81 12.86 -3.09 -0.04 -27.85 16 16 C -0.11 -4.45 4.11 29.85 0.12 -4.33 16 17 C 0.04 2.40 4.28 29.85 0.13 2.53 16 18 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 19 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 20 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 21 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 22 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 28 H 0.07 0.99 8.08 -2.38 -0.02 0.97 16 29 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.13 5.66 5.17 -3.95 -0.02 5.64 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.13 2.38 6.43 -2.38 -0.02 2.37 16 37 H 0.11 3.75 8.08 -2.39 -0.02 3.73 16 38 H 0.11 3.82 7.63 -2.39 -0.02 3.80 16 39 H -0.02 -0.96 8.04 -2.39 -0.02 -0.98 16 40 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 41 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -77.91 337.06 5.00 -72.91 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.01 Total: 14.25 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.52 Total: -16.80 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.60 Total: -79.47 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.96 Total: -36.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -77.91 5.00 -72.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291478590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.002 kcal (2) G-P(sol) polarization free energy of solvation -77.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds