Wall clock time and date at job start Tue Mar 31 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38276 * 119.96513 * 2 1 4 4 C 1.38201 * 120.29848 * 180.02562 * 3 2 1 5 5 C 1.38714 * 120.04582 * 359.97100 * 4 3 2 6 6 C 1.39206 * 119.54195 * 359.87296 * 5 4 3 7 7 C 1.38247 * 119.97033 * 179.72609 * 2 1 3 8 8 N 1.40545 * 119.73437 * 180.38412 * 6 5 4 9 9 C 1.34779 * 121.16528 * 166.02263 * 8 6 5 10 10 O 1.21301 * 119.99638 * 354.18300 * 9 8 6 11 11 C 1.50700 * 120.00283 * 174.18877 * 9 8 6 12 12 C 1.53002 * 109.46989 * 185.43182 * 11 9 8 13 13 C 1.50700 * 109.46989 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99903 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99885 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00241 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47371 * 89.99585 * 17 15 13 19 19 H 1.48502 * 109.47235 * 209.99641 * 17 15 13 20 20 H 1.48499 * 109.46643 * 329.99392 * 17 15 13 21 21 C 1.47303 * 117.67688 * 346.03448 * 8 6 5 22 22 C 1.53535 * 107.57640 * 42.02164 * 21 8 6 23 23 H 1.09006 * 109.57632 * 61.64760 * 22 21 8 24 24 C 1.52998 * 109.58011 * 181.90781 * 22 21 8 25 25 O 1.35903 * 119.66554 * 179.62087 * 5 4 3 26 26 H 1.09000 * 109.47583 * 90.00331 * 1 2 3 27 27 H 1.09005 * 109.47082 * 210.00128 * 1 2 3 28 28 H 1.08995 * 109.47558 * 329.99526 * 1 2 3 29 29 H 1.08006 * 119.85614 * 0.05130 * 3 2 1 30 30 H 1.08003 * 119.98130 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.06559 * 359.97438 * 7 2 1 32 32 H 1.09000 * 109.46782 * 305.42602 * 11 9 8 33 33 H 1.09002 * 109.47152 * 65.42920 * 11 9 8 34 34 H 1.09000 * 109.46885 * 299.99357 * 12 11 9 35 35 H 1.08995 * 109.47602 * 59.99540 * 12 11 9 36 36 H 0.97001 * 119.99775 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.83654 * 161.54530 * 21 8 6 38 38 H 1.09002 * 109.83764 * 282.44159 * 21 8 6 39 39 H 1.09001 * 109.47070 * 60.00161 * 24 22 21 40 40 H 1.08994 * 109.47241 * 180.02562 * 24 22 21 41 41 H 1.09003 * 109.47099 * 300.00198 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5796 1.2060 -0.0005 5 6 4.2811 0.0093 -0.0005 6 6 3.5834 -1.1953 0.0028 7 6 2.1976 -1.1976 0.0057 8 7 4.2901 -2.4102 0.0111 9 6 3.6725 -3.5745 0.2930 10 8 2.5127 -3.5752 0.6483 11 6 4.4228 -4.8753 0.1671 12 6 3.4641 -6.0426 0.4105 13 6 4.2143 -7.3435 0.2839 14 1 5.2693 -7.3382 0.0526 15 6 3.5539 -8.5404 0.4634 16 7 4.2086 -9.6757 0.3525 17 14 1.7292 -8.5496 0.8629 18 1 0.9466 -8.5920 -0.3984 19 1 1.4084 -9.7441 1.6848 20 1 1.3820 -7.3201 1.6198 21 6 5.7295 -2.3665 -0.2989 22 6 6.3235 -1.1511 0.4273 23 1 6.1959 -1.2702 1.5033 24 6 7.8130 -1.0344 0.0975 25 8 5.6400 0.0262 -0.0088 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6547 2.1316 0.0008 30 1 4.1139 2.1446 -0.0009 31 1 1.6582 -2.1332 0.0106 32 1 4.8457 -4.9553 -0.8343 33 1 5.2255 -4.9046 0.9040 34 1 3.0412 -5.9627 1.4119 35 1 2.6614 -6.0133 -0.3263 36 1 3.7439 -10.5178 0.4784 37 1 6.2113 -3.2790 0.0521 38 1 5.8733 -2.2626 -1.3744 39 1 7.9384 -0.9107 -0.9782 40 1 8.2329 -0.1714 0.6142 41 1 8.3289 -1.9382 0.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291497359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:06 Heat of formation + Delta-G solvation = -47.898917 kcal Electronic energy + Delta-G solvation = -23055.935989 eV Core-core repulsion = 19708.014454 eV Total energy + Delta-G solvation = -3347.921535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37010 -39.06810 -38.03459 -35.39557 -33.72073 -33.21950 -31.61736 -31.23230 -29.87614 -27.01046 -26.24412 -26.10666 -23.55987 -22.28943 -21.47823 -20.29387 -18.99186 -18.34117 -17.37198 -16.86136 -16.34920 -16.00120 -15.60412 -14.96615 -14.52920 -14.24069 -14.05374 -13.89082 -13.74858 -13.57278 -13.29026 -12.96737 -12.81252 -12.57483 -12.53072 -12.19563 -11.96883 -11.74668 -11.54115 -11.47118 -11.24875 -11.05120 -10.72869 -10.26478 -10.12846 -10.10550 -9.83872 -9.28290 -9.17012 -8.57539 -8.35227 -7.72313 -6.09565 -4.09249 1.27256 1.39316 2.67258 2.80319 3.08253 3.32933 3.40101 3.49811 3.79424 4.24357 4.44796 4.52235 4.65286 4.70261 4.87307 5.03131 5.05612 5.13159 5.25729 5.26944 5.32462 5.34199 5.48068 5.55675 5.59305 5.61991 5.79171 5.84836 5.89214 5.94312 5.98441 6.15069 6.27611 6.48194 6.51592 6.68162 6.89248 7.22858 7.29084 7.31558 7.37977 7.69876 8.26134 8.44593 8.92027 9.52917 11.03056 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004630 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.615950 B = 6046.663597 C = 7615.228584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.126 4.126 5 C 0.082 3.918 6 C 0.093 3.907 7 C -0.117 4.117 8 N -0.567 5.567 9 C 0.515 3.485 10 O -0.512 6.512 11 C -0.119 4.119 12 C 0.001 3.999 13 C -0.527 4.527 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.261 1.261 21 C 0.070 3.930 22 C 0.074 3.926 23 H 0.077 0.923 24 C -0.143 4.143 25 O -0.312 6.312 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.166 0.834 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 22.226 -1.300 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.134 4.134 4 C -0.145 4.145 5 C 0.035 3.965 6 C -0.002 4.002 7 C -0.137 4.137 8 N -0.292 5.292 9 C 0.307 3.693 10 O -0.386 6.386 11 C -0.159 4.159 12 C -0.036 4.036 13 C -0.565 4.565 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.052 4.052 22 C 0.017 3.983 23 H 0.095 0.905 24 C -0.201 4.201 25 O -0.227 6.227 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.183 0.817 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.875 22.043 -1.138 22.152 hybrid contribution -0.779 -0.327 0.197 0.868 sum 1.096 21.716 -0.940 21.764 Atomic orbital electron populations 1.20717 0.90948 1.02713 1.02157 1.19812 0.96284 0.92458 1.01242 1.20754 0.92901 0.97678 1.02096 1.20308 0.93593 0.95555 1.05019 1.18522 0.82117 0.92468 1.03373 1.18088 0.92259 0.84672 1.05133 1.21722 0.91762 1.00493 0.99741 1.46099 1.09529 1.05568 1.68034 1.21828 0.87719 0.84919 0.74800 1.90511 1.17508 1.86363 1.44244 1.21760 1.00440 0.90207 1.03469 1.19402 0.94503 0.91984 0.97755 1.21047 0.97538 0.88775 1.49136 0.90870 1.24954 0.98278 0.95436 0.94404 1.69907 1.36562 0.97510 1.50005 0.86812 0.85786 0.77980 0.79101 1.20181 1.21327 1.18525 1.22766 0.80027 1.00832 1.01619 1.22786 0.93242 0.83683 0.98596 0.90490 1.21764 0.91236 1.03643 1.03424 1.86002 1.15610 1.38615 1.82436 0.91372 0.91349 0.91744 0.85663 0.85150 0.81747 0.89252 0.89092 0.95516 0.96251 0.92619 0.86884 0.89451 0.91102 0.90973 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.10 -1.29 5.88 -104.61 -0.62 -1.91 16 3 C -0.12 -1.35 9.68 -39.58 -0.38 -1.73 16 4 C -0.13 -1.55 9.97 -39.42 -0.39 -1.94 16 5 C 0.08 1.17 6.52 -39.05 -0.25 0.91 16 6 C 0.09 1.48 6.33 -83.37 -0.53 0.95 16 7 C -0.12 -1.90 8.59 -39.45 -0.34 -2.24 16 8 N -0.57 -8.88 3.01 -112.34 -0.34 -9.22 16 9 C 0.51 9.54 7.59 -10.98 -0.08 9.46 16 10 O -0.51 -10.98 12.85 5.54 0.07 -10.91 16 11 C -0.12 -2.24 4.12 -27.88 -0.11 -2.35 16 12 C 0.00 0.04 3.35 -27.88 -0.09 -0.06 16 13 C -0.53 -14.67 9.66 -34.44 -0.33 -15.01 16 14 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 17 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 21 C 0.07 0.82 5.70 -3.33 -0.02 0.80 16 22 C 0.07 0.79 3.58 -26.45 -0.09 0.69 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -1.04 9.58 37.16 0.36 -0.69 16 25 O -0.31 -4.03 9.97 -19.44 -0.19 -4.22 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.17 3.01 5.16 -52.57 -0.27 2.74 16 32 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 33 H 0.09 1.55 7.62 -51.93 -0.40 1.15 16 34 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 35 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.11 1.14 6.43 -51.93 -0.33 0.80 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -33.35 333.45 -7.95 -41.31 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.99 Total: -0.86 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.63 Total: -11.94 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.44 Total: -35.89 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.12 Total: -15.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.35 -7.95 -41.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291497359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.591 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds