Wall clock time and date at job start Tue Mar 31 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38276 * 119.96513 * 2 1 4 4 C 1.38201 * 120.29848 * 180.02562 * 3 2 1 5 5 C 1.38714 * 120.04582 * 359.97100 * 4 3 2 6 6 C 1.39206 * 119.54195 * 359.87296 * 5 4 3 7 7 C 1.38247 * 119.97033 * 179.72609 * 2 1 3 8 8 N 1.40545 * 119.73437 * 180.38412 * 6 5 4 9 9 C 1.34779 * 121.16528 * 166.02263 * 8 6 5 10 10 O 1.21301 * 119.99638 * 354.18300 * 9 8 6 11 11 C 1.50700 * 120.00283 * 174.18877 * 9 8 6 12 12 C 1.53002 * 109.46989 * 185.43182 * 11 9 8 13 13 C 1.50700 * 109.46989 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99903 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99885 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00241 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47371 * 89.99585 * 17 15 13 19 19 H 1.48502 * 109.47235 * 209.99641 * 17 15 13 20 20 H 1.48499 * 109.46643 * 329.99392 * 17 15 13 21 21 C 1.47303 * 117.67688 * 346.03448 * 8 6 5 22 22 C 1.53535 * 107.57640 * 42.02164 * 21 8 6 23 23 H 1.09006 * 109.57632 * 61.64760 * 22 21 8 24 24 C 1.52998 * 109.58011 * 181.90781 * 22 21 8 25 25 O 1.35903 * 119.66554 * 179.62087 * 5 4 3 26 26 H 1.09000 * 109.47583 * 90.00331 * 1 2 3 27 27 H 1.09005 * 109.47082 * 210.00128 * 1 2 3 28 28 H 1.08995 * 109.47558 * 329.99526 * 1 2 3 29 29 H 1.08006 * 119.85614 * 0.05130 * 3 2 1 30 30 H 1.08003 * 119.98130 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.06559 * 359.97438 * 7 2 1 32 32 H 1.09000 * 109.46782 * 305.42602 * 11 9 8 33 33 H 1.09002 * 109.47152 * 65.42920 * 11 9 8 34 34 H 1.09000 * 109.46885 * 299.99357 * 12 11 9 35 35 H 1.08995 * 109.47602 * 59.99540 * 12 11 9 36 36 H 0.97001 * 119.99775 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.83654 * 161.54530 * 21 8 6 38 38 H 1.09002 * 109.83764 * 282.44159 * 21 8 6 39 39 H 1.09001 * 109.47070 * 60.00161 * 24 22 21 40 40 H 1.08994 * 109.47241 * 180.02562 * 24 22 21 41 41 H 1.09003 * 109.47099 * 300.00198 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5796 1.2060 -0.0005 5 6 4.2811 0.0093 -0.0005 6 6 3.5834 -1.1953 0.0028 7 6 2.1976 -1.1976 0.0057 8 7 4.2901 -2.4102 0.0111 9 6 3.6725 -3.5745 0.2930 10 8 2.5127 -3.5752 0.6483 11 6 4.4228 -4.8753 0.1671 12 6 3.4641 -6.0426 0.4105 13 6 4.2143 -7.3435 0.2839 14 1 5.2693 -7.3382 0.0526 15 6 3.5539 -8.5404 0.4634 16 7 4.2086 -9.6757 0.3525 17 14 1.7292 -8.5496 0.8629 18 1 0.9466 -8.5920 -0.3984 19 1 1.4084 -9.7441 1.6848 20 1 1.3820 -7.3201 1.6198 21 6 5.7295 -2.3665 -0.2989 22 6 6.3235 -1.1511 0.4273 23 1 6.1959 -1.2702 1.5033 24 6 7.8130 -1.0344 0.0975 25 8 5.6400 0.0262 -0.0088 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6547 2.1316 0.0008 30 1 4.1139 2.1446 -0.0009 31 1 1.6582 -2.1332 0.0106 32 1 4.8457 -4.9553 -0.8343 33 1 5.2255 -4.9046 0.9040 34 1 3.0412 -5.9627 1.4119 35 1 2.6614 -6.0133 -0.3263 36 1 3.7439 -10.5178 0.4784 37 1 6.2113 -3.2790 0.0521 38 1 5.8733 -2.2626 -1.3744 39 1 7.9384 -0.9107 -0.9782 40 1 8.2329 -0.1714 0.6142 41 1 8.3289 -1.9382 0.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291497359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:05 Heat of formation + Delta-G solvation = -67.915898 kcal Electronic energy + Delta-G solvation = -23056.803991 eV Core-core repulsion = 19708.014454 eV Total energy + Delta-G solvation = -3348.789536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48047 -40.34711 -39.00304 -36.60789 -35.67431 -34.13280 -33.49313 -32.16514 -31.07402 -28.37120 -27.54535 -27.08617 -24.82128 -23.18259 -23.08172 -21.57753 -20.24433 -19.41024 -19.08839 -18.22411 -17.56721 -17.21631 -16.89712 -16.28168 -15.97482 -15.60722 -15.23034 -15.03812 -14.88875 -14.77488 -14.68561 -14.26818 -14.10564 -13.73136 -13.41013 -13.26547 -13.07159 -12.99635 -12.80247 -12.64322 -12.44035 -12.28352 -12.10677 -12.01927 -11.82603 -11.62835 -11.43533 -11.20357 -10.80493 -10.55257 -9.42419 -8.80104 -8.33850 -6.36963 0.19645 0.34385 1.30849 1.33603 1.45430 1.47541 1.52426 2.17279 2.32411 2.75226 3.01994 3.33703 3.37446 3.74400 3.85651 3.93770 4.00505 4.16246 4.16928 4.24320 4.35689 4.39918 4.47720 4.52391 4.61805 4.81357 4.83399 4.84094 4.88710 4.96593 5.11641 5.14555 5.23789 5.25769 5.28259 5.35370 5.46189 5.55804 5.66530 5.86321 6.06926 6.20381 6.35985 6.68549 6.91556 7.28574 8.81535 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004630 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.615950 B = 6046.663597 C = 7615.228584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.104 4.104 4 C -0.124 4.124 5 C 0.075 3.925 6 C 0.064 3.936 7 C -0.145 4.145 8 N -0.563 5.563 9 C 0.514 3.486 10 O -0.551 6.551 11 C -0.110 4.110 12 C 0.006 3.994 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.941 5.941 17 Si 0.934 3.066 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.263 1.263 21 C 0.062 3.938 22 C 0.072 3.928 23 H 0.072 0.928 24 C -0.136 4.136 25 O -0.315 6.315 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.012 0.988 35 H 0.009 0.991 36 H 0.268 0.732 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 24.929 -1.462 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.122 4.122 4 C -0.143 4.143 5 C 0.028 3.972 6 C -0.030 4.030 7 C -0.165 4.165 8 N -0.288 5.288 9 C 0.307 3.693 10 O -0.430 6.430 11 C -0.149 4.149 12 C -0.032 4.032 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.180 4.180 16 N -0.581 5.581 17 Si 0.759 3.241 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.059 4.059 22 C 0.016 3.984 23 H 0.090 0.910 24 C -0.193 4.193 25 O -0.230 6.230 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.181 0.819 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.230 24.780 -1.313 24.915 hybrid contribution -0.812 -1.071 0.225 1.363 sum 1.418 23.709 -1.088 23.776 Atomic orbital electron populations 1.20761 0.89338 1.03267 1.02999 1.20133 0.97627 0.92160 1.00596 1.21169 0.92899 0.98349 0.99824 1.20747 0.94065 0.95933 1.03562 1.18763 0.82783 0.92389 1.03272 1.18307 0.92480 0.85239 1.06996 1.21640 0.92319 1.00607 1.01979 1.46024 1.10983 1.04820 1.66928 1.21618 0.87163 0.85694 0.74871 1.90513 1.19027 1.87065 1.46351 1.21567 0.99565 0.88675 1.05122 1.19234 0.94937 0.92525 0.96514 1.21354 0.97026 0.90335 1.47883 0.92730 1.25737 1.02378 0.95291 0.94640 1.70012 1.38319 0.98194 1.51595 0.85894 0.81021 0.78026 0.79190 1.19392 1.20325 1.18697 1.23120 0.77885 1.02295 1.02647 1.23006 0.94812 0.82489 0.98127 0.91049 1.21796 0.88653 1.04956 1.03942 1.86008 1.14926 1.39625 1.82443 0.90321 0.92821 0.89140 0.81943 0.82412 0.84653 0.87488 0.87142 0.96961 0.97298 0.92324 0.85306 0.88334 0.90571 0.90222 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.10 -2.67 5.88 -19.85 -0.12 -2.79 16 3 C -0.10 -2.12 9.68 22.27 0.22 -1.91 16 4 C -0.12 -2.71 9.97 22.37 0.22 -2.49 16 5 C 0.07 2.02 6.52 22.62 0.15 2.17 16 6 C 0.06 2.03 6.33 38.06 0.24 2.27 16 7 C -0.15 -4.82 8.59 22.35 0.19 -4.63 16 8 N -0.56 -17.58 3.01 -627.71 -1.89 -19.47 16 9 C 0.51 19.37 7.59 87.66 0.67 20.03 16 10 O -0.55 -24.68 12.85 -3.09 -0.04 -24.72 16 11 C -0.11 -4.10 4.12 29.85 0.12 -3.98 16 12 C 0.01 0.29 3.35 29.85 0.10 0.39 16 13 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 14 H 0.05 3.21 7.99 -2.91 -0.02 3.18 16 15 C 0.02 1.03 5.47 84.65 0.46 1.50 16 16 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 17 Si 0.93 46.23 27.47 68.60 1.88 48.11 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.26 -12.97 6.54 99.48 0.65 -12.32 16 21 C 0.06 1.35 5.70 86.41 0.49 1.84 16 22 C 0.07 1.40 3.58 30.77 0.11 1.51 16 23 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 24 C -0.14 -1.61 9.58 71.98 0.69 -0.92 16 25 O -0.32 -7.52 9.97 -92.46 -0.92 -8.45 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.22 8.08 -2.38 -0.02 1.20 16 28 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.14 5.30 5.16 -4.14 -0.02 5.27 16 32 H 0.11 3.59 8.09 -2.39 -0.02 3.57 16 33 H 0.11 3.65 7.62 -2.39 -0.02 3.64 16 34 H 0.01 0.62 7.10 -2.39 -0.02 0.61 16 35 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 37 H 0.13 2.34 6.43 -2.39 -0.02 2.33 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -74.01 333.45 4.80 -69.21 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.96 Total: 11.02 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.51 Total: -17.97 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.59 Total: -77.21 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.96 Total: -33.17 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Total: -74.01 4.80 -69.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291497359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds