Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 110.66935 * 2 1 4 4 C 1.54700 * 110.75151 * 236.57811 * 2 1 3 5 5 C 1.51662 * 101.94257 * 266.98688 * 4 2 1 6 6 C 1.37698 * 132.09900 * 164.12255 * 5 4 2 7 7 C 1.38920 * 119.92076 * 180.91965 * 6 5 4 8 8 N 1.40109 * 120.18679 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00162 * 324.92537 * 8 7 6 10 10 O 1.21293 * 119.99661 * 4.64765 * 9 8 7 11 11 C 1.50695 * 120.00326 * 184.64621 * 9 8 7 12 12 C 1.52997 * 109.47439 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47439 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00261 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99747 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47805 * 59.99509 * 17 15 13 19 19 H 1.48497 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46986 * 299.99220 * 17 15 13 21 21 C 1.38860 * 119.62216 * 359.97438 * 7 6 5 22 22 C 1.37867 * 120.27808 * 0.11355 * 21 7 6 23 23 C 1.38889 * 107.04620 * 344.65028 * 5 4 2 24 24 O 1.36235 * 111.20677 * 358.85034 * 23 5 4 25 25 H 1.09001 * 109.47160 * 298.23771 * 1 2 3 26 26 H 1.08998 * 109.46399 * 58.23823 * 1 2 3 27 27 H 1.09000 * 109.47279 * 178.23233 * 1 2 3 28 28 H 1.08998 * 109.47591 * 181.76352 * 3 2 1 29 29 H 1.09004 * 109.47481 * 301.76588 * 3 2 1 30 30 H 1.09001 * 109.47201 * 61.76023 * 3 2 1 31 31 H 1.08993 * 110.93558 * 148.82133 * 4 2 1 32 32 H 1.09011 * 110.93340 * 25.14742 * 4 2 1 33 33 H 1.08006 * 120.03604 * 0.90417 * 6 5 4 34 34 H 0.97003 * 120.00181 * 144.93033 * 8 7 6 35 35 H 1.09008 * 109.47167 * 300.00251 * 11 9 8 36 36 H 1.08998 * 109.47446 * 59.99586 * 11 9 8 37 37 H 1.09008 * 109.46923 * 300.00127 * 12 11 9 38 38 H 1.08998 * 109.47362 * 59.99261 * 12 11 9 39 39 H 0.97004 * 119.99839 * 180.02562 * 16 15 13 40 40 H 1.08003 * 119.85837 * 179.82780 * 21 7 6 41 41 H 1.07994 * 119.83231 * 179.72607 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4314 0.0000 4 6 2.0782 -0.7968 -1.2074 5 6 2.2623 -2.1800 -0.6132 6 6 2.4440 -3.4164 -1.1913 7 6 2.5698 -4.5443 -0.3901 8 7 2.7554 -5.8050 -0.9724 9 6 2.1537 -6.1027 -2.1412 10 8 1.5206 -5.2528 -2.7311 11 6 2.2675 -7.4915 -2.7151 12 6 1.5001 -7.5617 -4.0368 13 6 1.6134 -8.9506 -4.6103 14 1 2.1761 -9.7077 -4.0845 15 6 0.9978 -9.2551 -5.8058 16 7 0.3112 -8.3336 -6.4454 17 14 1.1376 -10.9770 -6.5164 18 1 0.5646 -11.9561 -5.5582 19 1 0.3918 -11.0454 -7.7987 20 1 2.5673 -11.2985 -6.7571 21 6 2.5115 -4.4149 0.9913 22 6 2.3276 -3.1753 1.5662 23 6 2.2091 -2.0402 0.7677 24 8 2.0393 -0.7365 1.1249 25 1 -0.3633 0.4862 0.9054 26 1 -0.3632 0.5410 -0.8738 27 1 -0.3634 -1.0272 -0.0317 28 1 3.1593 1.4089 -0.0316 29 1 1.6921 1.9624 -0.8737 30 1 1.7434 1.9430 0.9053 31 1 3.0306 -0.3876 -1.5441 32 1 1.3543 -0.8162 -2.0223 33 1 2.4885 -3.5092 -2.2665 34 1 3.3169 -6.4637 -0.5345 35 1 3.3171 -7.7267 -2.8918 36 1 1.8475 -8.2107 -2.0120 37 1 0.4504 -7.3263 -3.8604 38 1 1.9204 -6.8424 -4.7397 39 1 -0.1222 -8.5480 -7.2863 40 1 2.6060 -5.2895 1.6177 41 1 2.2790 -3.0836 2.6411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291975645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = -56.305591 kcal Electronic energy + Delta-G solvation = -22200.355487 eV Core-core repulsion = 18852.069411 eV Total energy + Delta-G solvation = -3348.286076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40329 -39.79840 -37.43448 -34.29946 -33.80092 -33.51705 -31.51573 -31.12986 -28.95804 -27.72528 -26.74351 -25.65887 -22.95880 -21.90955 -21.18515 -20.79518 -19.69055 -17.38586 -17.34316 -16.80255 -16.11672 -15.73474 -15.51581 -14.95521 -14.52568 -14.43285 -14.10282 -13.81503 -13.37888 -13.32457 -12.99835 -12.91369 -12.66646 -12.48620 -12.24892 -12.21832 -12.19099 -11.92135 -11.29491 -11.19833 -11.17908 -10.93839 -10.70289 -10.65093 -10.01331 -9.73457 -9.66183 -9.25512 -9.10916 -8.80327 -8.35433 -7.61199 -5.99285 -4.04039 1.24710 1.39644 3.00480 3.12086 3.32631 3.36268 3.38096 3.41790 3.76327 4.27981 4.34599 4.45160 4.57833 4.79543 4.90501 5.03697 5.23975 5.25606 5.34395 5.35781 5.37218 5.40328 5.49099 5.53745 5.67753 5.71640 5.81242 5.94639 5.95806 6.05703 6.13385 6.14562 6.38692 6.42957 6.49008 6.81543 6.86295 7.24555 7.68673 7.70996 7.80153 8.02372 8.33405 8.59798 9.03765 9.59730 11.11600 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030855 B = 0.002884 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.251009 B = 9706.074314 C =10349.022541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 C -0.140 4.140 4 C -0.101 4.101 5 C -0.153 4.153 6 C -0.074 4.074 7 C 0.130 3.870 8 N -0.684 5.684 9 C 0.509 3.491 10 O -0.516 6.516 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.118 4.118 22 C -0.121 4.121 23 C 0.082 3.918 24 O -0.300 6.300 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.133 0.867 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 15.488 16.211 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 C -0.197 4.197 4 C -0.138 4.138 5 C -0.155 4.155 6 C -0.094 4.094 7 C 0.035 3.965 8 N -0.330 5.330 9 C 0.299 3.701 10 O -0.389 6.389 11 C -0.168 4.168 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.138 4.138 22 C -0.140 4.140 23 C 0.037 3.963 24 O -0.215 6.215 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.161 0.839 34 H 0.244 0.756 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.622 16.191 15.756 23.060 hybrid contribution 0.253 -1.361 -0.307 1.417 sum 4.874 14.830 15.449 21.963 Atomic orbital electron populations 1.22199 0.93489 1.03412 1.02965 1.22713 0.94325 0.92760 0.83811 1.21823 1.01908 0.92844 1.03127 1.21876 1.02648 0.91116 0.98160 1.20590 1.06163 0.95023 0.93696 1.20484 0.98571 0.88908 1.01426 1.17616 1.01973 0.85463 0.91447 1.43861 1.50835 1.13648 1.24691 1.21837 0.77040 0.92191 0.79066 1.90662 1.39873 1.49832 1.58567 1.21905 1.03449 0.89820 1.01671 1.18907 0.95549 0.96950 0.88631 1.21164 1.32946 0.96410 1.06222 0.92594 1.25022 0.95217 0.97119 0.96983 1.69984 1.33320 1.33200 1.16285 0.86638 0.78153 0.84682 0.78378 1.20228 1.21270 1.20222 1.20603 1.03019 0.97159 0.93038 1.19941 1.05822 0.88881 0.99393 1.19453 0.99200 0.84917 0.92755 1.86853 1.80392 1.16487 1.37800 0.91455 0.90680 0.91637 0.91480 0.90342 0.91360 0.89128 0.88848 0.83867 0.75556 0.89850 0.89815 0.95751 0.95751 0.92848 0.84952 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.85 37.16 0.33 -1.21 16 2 C 0.10 1.04 1.26 -89.73 -0.11 0.93 16 3 C -0.14 -1.05 8.96 37.15 0.33 -0.72 16 4 C -0.10 -1.14 6.18 -26.51 -0.16 -1.30 16 5 C -0.15 -2.16 6.26 -104.10 -0.65 -2.81 16 6 C -0.07 -1.17 8.69 -39.53 -0.34 -1.51 16 7 C 0.13 1.90 6.31 -83.59 -0.53 1.37 16 8 N -0.68 -9.78 5.35 -9.81 -0.05 -9.83 16 9 C 0.51 9.53 7.68 -10.98 -0.08 9.45 16 10 O -0.52 -11.70 13.43 5.55 0.07 -11.62 16 11 C -0.13 -2.51 5.64 -27.89 -0.16 -2.66 16 12 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 13 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.12 -1.42 9.94 -39.49 -0.39 -1.81 16 22 C -0.12 -1.48 10.06 -39.33 -0.40 -1.87 16 23 C 0.08 1.11 6.94 -38.95 -0.27 0.84 16 24 O -0.30 -3.85 10.53 -20.49 -0.22 -4.07 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 32 H 0.09 1.01 7.92 -51.92 -0.41 0.59 16 33 H 0.14 2.56 6.24 -52.48 -0.33 2.23 16 34 H 0.41 4.30 8.83 -40.82 -0.36 3.94 16 35 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -33.96 343.40 -8.39 -42.35 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.12 Total: 1.94 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.97 Total: -13.96 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.68 Total: -36.25 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.14 Total: -15.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.96 -8.39 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291975645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds