Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 110.66935 * 2 1 4 4 C 1.54700 * 110.75151 * 236.57811 * 2 1 3 5 5 C 1.51662 * 101.94257 * 266.98688 * 4 2 1 6 6 C 1.37698 * 132.09900 * 164.12255 * 5 4 2 7 7 C 1.38920 * 119.92076 * 180.91965 * 6 5 4 8 8 N 1.40109 * 120.18679 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00162 * 324.92537 * 8 7 6 10 10 O 1.21293 * 119.99661 * 4.64765 * 9 8 7 11 11 C 1.50695 * 120.00326 * 184.64621 * 9 8 7 12 12 C 1.52997 * 109.47439 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47439 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00261 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99747 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47805 * 59.99509 * 17 15 13 19 19 H 1.48497 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46986 * 299.99220 * 17 15 13 21 21 C 1.38860 * 119.62216 * 359.97438 * 7 6 5 22 22 C 1.37867 * 120.27808 * 0.11355 * 21 7 6 23 23 C 1.38889 * 107.04620 * 344.65028 * 5 4 2 24 24 O 1.36235 * 111.20677 * 358.85034 * 23 5 4 25 25 H 1.09001 * 109.47160 * 298.23771 * 1 2 3 26 26 H 1.08998 * 109.46399 * 58.23823 * 1 2 3 27 27 H 1.09000 * 109.47279 * 178.23233 * 1 2 3 28 28 H 1.08998 * 109.47591 * 181.76352 * 3 2 1 29 29 H 1.09004 * 109.47481 * 301.76588 * 3 2 1 30 30 H 1.09001 * 109.47201 * 61.76023 * 3 2 1 31 31 H 1.08993 * 110.93558 * 148.82133 * 4 2 1 32 32 H 1.09011 * 110.93340 * 25.14742 * 4 2 1 33 33 H 1.08006 * 120.03604 * 0.90417 * 6 5 4 34 34 H 0.97003 * 120.00181 * 144.93033 * 8 7 6 35 35 H 1.09008 * 109.47167 * 300.00251 * 11 9 8 36 36 H 1.08998 * 109.47446 * 59.99586 * 11 9 8 37 37 H 1.09008 * 109.46923 * 300.00127 * 12 11 9 38 38 H 1.08998 * 109.47362 * 59.99261 * 12 11 9 39 39 H 0.97004 * 119.99839 * 180.02562 * 16 15 13 40 40 H 1.08003 * 119.85837 * 179.82780 * 21 7 6 41 41 H 1.07994 * 119.83231 * 179.72607 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4314 0.0000 4 6 2.0782 -0.7968 -1.2074 5 6 2.2623 -2.1800 -0.6132 6 6 2.4440 -3.4164 -1.1913 7 6 2.5698 -4.5443 -0.3901 8 7 2.7554 -5.8050 -0.9724 9 6 2.1537 -6.1027 -2.1412 10 8 1.5206 -5.2528 -2.7311 11 6 2.2675 -7.4915 -2.7151 12 6 1.5001 -7.5617 -4.0368 13 6 1.6134 -8.9506 -4.6103 14 1 2.1761 -9.7077 -4.0845 15 6 0.9978 -9.2551 -5.8058 16 7 0.3112 -8.3336 -6.4454 17 14 1.1376 -10.9770 -6.5164 18 1 0.5646 -11.9561 -5.5582 19 1 0.3918 -11.0454 -7.7987 20 1 2.5673 -11.2985 -6.7571 21 6 2.5115 -4.4149 0.9913 22 6 2.3276 -3.1753 1.5662 23 6 2.2091 -2.0402 0.7677 24 8 2.0393 -0.7365 1.1249 25 1 -0.3633 0.4862 0.9054 26 1 -0.3632 0.5410 -0.8738 27 1 -0.3634 -1.0272 -0.0317 28 1 3.1593 1.4089 -0.0316 29 1 1.6921 1.9624 -0.8737 30 1 1.7434 1.9430 0.9053 31 1 3.0306 -0.3876 -1.5441 32 1 1.3543 -0.8162 -2.0223 33 1 2.4885 -3.5092 -2.2665 34 1 3.3169 -6.4637 -0.5345 35 1 3.3171 -7.7267 -2.8918 36 1 1.8475 -8.2107 -2.0120 37 1 0.4504 -7.3263 -3.8604 38 1 1.9204 -6.8424 -4.7397 39 1 -0.1222 -8.5480 -7.2863 40 1 2.6060 -5.2895 1.6177 41 1 2.2790 -3.0836 2.6411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291975645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -77.937641 kcal Electronic energy + Delta-G solvation = -22201.293523 eV Core-core repulsion = 18852.069411 eV Total energy + Delta-G solvation = -3349.224112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38475 -41.14444 -38.61108 -35.62811 -35.45891 -34.74571 -33.05833 -32.44990 -30.19650 -28.41825 -27.92280 -27.31532 -24.45086 -23.17478 -22.51505 -21.69931 -21.14274 -18.90789 -18.43209 -18.23428 -17.50190 -17.03899 -16.53931 -16.46958 -16.35548 -15.44445 -15.20439 -14.92088 -14.77690 -14.36339 -14.22300 -14.16122 -13.85768 -13.70065 -13.46049 -13.25342 -13.15888 -12.95837 -12.83367 -12.75992 -12.51930 -12.18622 -12.05263 -11.91962 -11.68097 -11.63423 -11.32400 -10.87633 -10.69906 -10.55541 -9.87873 -8.71090 -8.18301 -6.32311 0.19235 0.31040 1.42457 1.46723 1.54367 1.61137 2.03376 2.28563 2.44121 2.70353 3.14958 3.38601 3.47409 3.80644 3.89963 3.94481 4.04956 4.14981 4.27991 4.45532 4.51131 4.54937 4.59506 4.61615 4.69913 4.70521 4.80069 4.86936 4.99140 5.03725 5.07512 5.15477 5.24960 5.32493 5.38112 5.40672 5.49514 5.61994 5.74308 5.84884 6.16579 6.22696 6.49451 6.85953 7.22843 7.38041 8.94131 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030855 B = 0.002884 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.251009 B = 9706.074314 C =10349.022541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 C -0.136 4.136 4 C -0.104 4.104 5 C -0.170 4.170 6 C -0.099 4.099 7 C 0.106 3.894 8 N -0.659 5.659 9 C 0.510 3.490 10 O -0.567 6.567 11 C -0.116 4.116 12 C 0.042 3.958 13 C -0.544 4.544 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.262 1.262 21 C -0.101 4.101 22 C -0.120 4.120 23 C 0.076 3.924 24 O -0.308 6.308 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.430 0.570 35 H 0.111 0.889 36 H 0.111 0.889 37 H -0.018 1.018 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.170 0.830 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.304 14.669 18.588 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 C -0.193 4.193 4 C -0.141 4.141 5 C -0.172 4.172 6 C -0.119 4.119 7 C 0.012 3.988 8 N -0.306 5.306 9 C 0.300 3.700 10 O -0.445 6.445 11 C -0.155 4.155 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.121 4.121 22 C -0.139 4.139 23 C 0.030 3.970 24 O -0.223 6.223 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.001 0.999 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.188 0.812 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.784 15.362 18.198 24.508 hybrid contribution -0.100 -0.994 -0.990 1.406 sum 5.685 14.368 17.209 23.128 Atomic orbital electron populations 1.22211 0.92982 1.02294 1.04422 1.22976 0.94813 0.93755 0.82354 1.21854 1.01919 0.90961 1.04540 1.21996 1.03265 0.90162 0.98721 1.20830 1.06146 0.95464 0.94712 1.20395 1.00704 0.90634 1.00183 1.17815 1.03593 0.84786 0.92615 1.43433 1.49870 1.14198 1.23127 1.21634 0.76906 0.91402 0.80037 1.90662 1.42449 1.50995 1.60360 1.21658 1.04026 0.91166 0.98678 1.18690 0.93793 0.95584 0.91499 1.21689 1.32674 0.97262 1.06524 0.90419 1.26135 0.94688 1.02008 0.97624 1.70171 1.34706 1.36038 1.16871 0.85379 0.78794 0.78732 0.77379 1.18677 1.21466 1.18655 1.20930 1.00799 0.98509 0.91856 1.20368 1.04426 0.88325 1.00826 1.19749 0.98818 0.85772 0.92615 1.86842 1.80468 1.16174 1.38861 0.90295 0.88920 0.94017 0.91464 0.88371 0.90452 0.88107 0.89085 0.87072 0.73049 0.87137 0.87128 0.99944 0.99837 0.92881 0.81245 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.85 71.98 0.64 -2.28 16 2 C 0.10 1.92 1.26 -10.22 -0.01 1.91 16 3 C -0.14 -1.78 8.96 71.98 0.64 -1.13 16 4 C -0.10 -2.40 6.18 30.73 0.19 -2.21 16 5 C -0.17 -4.92 6.26 -19.53 -0.12 -5.05 16 6 C -0.10 -3.29 8.69 22.31 0.19 -3.10 16 7 C 0.11 3.05 6.31 38.13 0.24 3.29 16 8 N -0.66 -18.22 5.35 -303.32 -1.62 -19.85 16 9 C 0.51 19.50 7.68 87.65 0.67 20.18 16 10 O -0.57 -27.47 13.43 -3.07 -0.04 -27.52 16 11 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 12 C 0.04 2.30 4.26 29.85 0.13 2.43 16 13 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 15 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 16 N -0.94 -59.36 13.29 21.45 0.28 -59.07 16 17 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 21 C -0.10 -2.19 9.94 22.33 0.22 -1.96 16 22 C -0.12 -2.65 10.06 22.43 0.23 -2.43 16 23 C 0.08 2.00 6.94 22.68 0.16 2.15 16 24 O -0.31 -7.53 10.53 -96.23 -1.01 -8.55 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 2.03 7.91 -2.39 -0.02 2.02 16 32 H 0.09 2.08 7.92 -2.38 -0.02 2.06 16 33 H 0.11 4.38 6.24 -2.91 -0.02 4.37 16 34 H 0.43 7.93 8.83 -92.71 -0.82 7.11 16 35 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 36 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 37 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 38 H -0.02 -1.05 8.10 -2.39 -0.02 -1.06 16 39 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -78.54 343.40 3.89 -74.65 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.21 Total: 17.09 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.04 Total: -22.75 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.34 Total: -78.92 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.05 Total: -36.06 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -78.54 3.89 -74.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291975645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.289 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds