Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50706 * 119.99779 * 2 1 4 4 N 1.46503 * 109.47003 * 126.18222 * 3 2 1 5 5 C 1.46499 * 120.00014 * 277.33931 * 4 3 2 6 6 C 1.50698 * 109.47004 * 269.99825 * 5 4 3 7 7 H 1.07996 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00145 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46953 * 90.00017 * 10 8 6 12 12 H 1.48501 * 109.47034 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47244 * 329.99993 * 10 8 6 14 14 C 1.34777 * 119.99553 * 97.34252 * 4 3 2 15 15 O 1.21554 * 119.99854 * 185.62700 * 14 4 3 16 16 C 1.47852 * 120.00348 * 5.62173 * 14 4 3 17 17 C 1.39607 * 120.12178 * 311.30978 * 16 14 4 18 18 C 1.37964 * 119.96715 * 180.22677 * 17 16 14 19 19 C 1.38283 * 120.20477 * 359.51809 * 18 17 16 20 20 C 1.50699 * 119.87864 * 180.23478 * 19 18 17 21 21 C 1.38811 * 120.24309 * 0.45698 * 19 18 17 22 22 O 1.35909 * 119.98564 * 179.76938 * 21 19 18 23 23 C 1.42905 * 116.99619 * 180.02562 * 22 21 19 24 24 C 1.38494 * 120.02400 * 359.79788 * 21 19 18 25 25 H 1.07994 * 120.00167 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99449 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00167 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46802 * 6.18366 * 3 2 1 29 29 H 1.08997 * 109.47111 * 246.18688 * 3 2 1 30 30 H 1.09001 * 109.47133 * 30.00478 * 5 4 3 31 31 H 1.09001 * 109.46620 * 149.99935 * 5 4 3 32 32 H 0.97001 * 120.00025 * 179.97438 * 9 8 6 33 33 H 1.08000 * 120.01046 * 359.94935 * 17 16 14 34 34 H 1.07997 * 119.89157 * 179.74075 * 18 17 16 35 35 H 1.09006 * 109.46819 * 270.22340 * 20 19 18 36 36 H 1.09000 * 109.47268 * 30.22400 * 20 19 18 37 37 H 1.09004 * 109.47334 * 150.22963 * 20 19 18 38 38 H 1.09002 * 109.47109 * 300.00260 * 23 22 21 39 39 H 1.09001 * 109.47390 * 60.00365 * 23 22 21 40 40 H 1.08998 * 109.46744 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.09888 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0139 1.3204 1.1149 5 6 2.5607 1.6875 2.4588 6 6 2.7025 3.1759 2.6476 7 1 3.0910 3.7873 1.8466 8 6 2.3364 3.7571 3.8431 9 7 2.4597 5.0561 4.0077 10 14 1.6651 2.6995 5.2289 11 1 2.7864 2.2341 6.0840 12 1 0.7174 3.4984 6.0467 13 1 0.9579 1.5253 4.6575 14 6 4.3051 0.9967 0.9040 15 8 5.0711 0.9096 1.8438 16 6 4.7899 0.7475 -0.4703 17 6 4.0825 -0.1062 -1.3188 18 6 4.5404 -0.3401 -2.5990 19 6 5.6935 0.2763 -3.0490 20 6 6.1841 0.0196 -4.4506 21 6 6.4033 1.1271 -2.2129 22 8 7.5386 1.7266 -2.6590 23 6 8.2188 2.5893 -1.7450 24 6 5.9555 1.3649 -0.9241 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3603 2.1306 0.1107 29 1 2.6045 1.4124 -0.9402 30 1 1.5152 1.4038 2.5798 31 1 3.1664 1.1677 3.2010 32 1 2.2018 5.4650 4.8486 33 1 3.1798 -0.5866 -0.9715 34 1 3.9945 -1.0040 -3.2529 35 1 6.8564 -0.8384 -4.4488 36 1 5.3340 -0.1862 -5.1011 37 1 6.7168 0.8978 -4.8157 38 1 7.5550 3.4019 -1.4499 39 1 8.5144 2.0226 -0.8620 40 1 9.1056 3.0016 -2.2262 41 1 6.5071 2.0263 -0.2724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292252295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = -16.478097 kcal Electronic energy + Delta-G solvation = -23032.161718 eV Core-core repulsion = 19685.602692 eV Total energy + Delta-G solvation = -3346.559026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49114 -39.11330 -37.10999 -35.87191 -33.32493 -32.79719 -32.10266 -30.21376 -28.67411 -27.65301 -26.77824 -25.57816 -22.98717 -22.19939 -21.48682 -20.21651 -19.13423 -17.55288 -16.93629 -16.49993 -15.99600 -15.95319 -15.71740 -15.24784 -14.59788 -14.35044 -14.11080 -13.92216 -13.59115 -13.47511 -13.10177 -12.90256 -12.39140 -12.25928 -12.06158 -12.04231 -11.73869 -11.62409 -11.39362 -11.22210 -11.10134 -10.99692 -10.86427 -10.53947 -10.16474 -9.60046 -9.28608 -9.19542 -8.78088 -8.60811 -8.08713 -7.79885 -6.10978 -4.10136 1.09202 1.42525 2.34409 3.16455 3.28394 3.29028 3.34500 3.36677 3.67384 3.97617 4.38178 4.71273 4.80670 4.93329 5.06086 5.13179 5.17682 5.19576 5.22866 5.31704 5.32281 5.46384 5.53586 5.57622 5.58603 5.67328 5.77920 5.94631 6.06914 6.15061 6.22844 6.41693 6.46656 6.66097 6.70140 6.74769 6.82535 6.93278 7.30325 7.33003 7.58188 8.15662 8.43593 8.83725 8.92879 9.49133 11.02232 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.004904 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.238598 B = 5708.718770 C = 6821.873292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.127 3.873 4 N -0.579 5.579 5 C 0.216 3.784 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.551 3.449 15 O -0.534 6.534 16 C -0.079 4.079 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.108 4.108 20 C -0.104 4.104 21 C 0.120 3.880 22 O -0.315 6.315 23 C 0.024 3.976 24 C -0.155 4.155 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -10.317 -16.126 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.004 3.996 4 N -0.309 5.309 5 C 0.096 3.904 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.337 3.663 15 O -0.412 6.412 16 C -0.082 4.082 17 C -0.153 4.153 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.160 4.160 21 C 0.075 3.925 22 O -0.229 6.229 23 C -0.071 4.071 24 C -0.175 4.175 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.619 -10.192 -15.638 19.014 hybrid contribution -0.405 -0.204 1.179 1.264 sum 3.214 -10.396 -14.459 18.096 Atomic orbital electron populations 1.23859 0.95764 1.01951 0.99996 1.23451 0.96382 0.98895 1.00442 1.20818 0.92816 0.95365 0.90642 1.47811 1.07030 1.65262 1.10785 1.19697 0.94981 0.96874 0.78873 1.21318 1.43739 0.90557 1.01310 0.90722 1.24834 0.95077 0.94869 0.98068 1.69895 1.48053 1.09792 1.25773 0.86865 0.79454 0.80752 0.82762 1.19863 1.21014 1.18960 1.18238 0.82537 0.77681 0.87799 1.90755 1.55016 1.51890 1.43529 1.19905 0.95329 0.98359 0.94593 1.21613 1.00526 0.99477 0.93712 1.20772 0.95229 0.99123 0.95770 1.19342 0.96125 0.98763 0.96663 1.20612 1.01130 1.02365 0.91929 1.18657 0.87378 0.94344 0.92167 1.86021 1.35842 1.59554 1.41484 1.23107 0.96870 0.93186 0.93973 1.21256 0.97720 1.03307 0.95176 0.88094 0.88596 0.87366 0.89389 0.89368 0.94911 0.94353 0.92527 0.84406 0.85039 0.91451 0.91665 0.91179 0.92282 0.92339 0.88239 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 14.32 29.01 0.42 -1.75 16 2 C -0.17 -2.36 8.56 -36.02 -0.31 -2.66 16 3 C 0.13 2.09 5.34 -5.19 -0.03 2.06 16 4 N -0.58 -12.25 2.45 -177.54 -0.43 -12.68 16 5 C 0.22 5.35 4.28 -5.19 -0.02 5.32 16 6 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 7 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 10 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.55 11.89 7.23 -12.33 -0.09 11.80 16 15 O -0.53 -13.64 16.58 5.32 0.09 -13.56 16 16 C -0.08 -1.36 4.96 -104.99 -0.52 -1.88 16 17 C -0.13 -1.87 7.48 -39.17 -0.29 -2.16 16 18 C -0.09 -1.06 9.68 -39.67 -0.38 -1.45 16 19 C -0.11 -1.34 5.90 -104.39 -0.62 -1.96 16 20 C -0.10 -0.98 9.78 36.01 0.35 -0.63 16 21 C 0.12 1.70 6.65 -39.28 -0.26 1.44 16 22 O -0.32 -4.08 9.52 -19.46 -0.19 -4.27 16 23 C 0.02 0.25 9.81 101.05 0.99 1.24 16 24 C -0.16 -2.54 8.71 -39.02 -0.34 -2.88 16 25 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 26 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 27 H 0.11 1.37 6.51 -52.49 -0.34 1.02 16 28 H 0.09 1.51 7.78 -51.93 -0.40 1.10 16 29 H 0.09 1.32 5.26 -51.93 -0.27 1.04 16 30 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 31 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.14 1.73 4.14 -52.49 -0.22 1.51 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 38 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.14 2.27 6.29 -52.48 -0.33 1.94 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -34.25 340.26 -6.43 -40.68 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.59 Total: 1.60 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.54 Total: -7.04 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.34 Total: -39.48 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.10 Total: -17.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.25 -6.43 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292252295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.199 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds