Wall clock time and date at job start Tue Mar 31 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50706 * 119.99779 * 2 1 4 4 N 1.46503 * 109.47003 * 126.18222 * 3 2 1 5 5 C 1.46499 * 120.00014 * 277.33931 * 4 3 2 6 6 C 1.50698 * 109.47004 * 269.99825 * 5 4 3 7 7 H 1.07996 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00145 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46953 * 90.00017 * 10 8 6 12 12 H 1.48501 * 109.47034 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47244 * 329.99993 * 10 8 6 14 14 C 1.34777 * 119.99553 * 97.34252 * 4 3 2 15 15 O 1.21554 * 119.99854 * 185.62700 * 14 4 3 16 16 C 1.47852 * 120.00348 * 5.62173 * 14 4 3 17 17 C 1.39607 * 120.12178 * 311.30978 * 16 14 4 18 18 C 1.37964 * 119.96715 * 180.22677 * 17 16 14 19 19 C 1.38283 * 120.20477 * 359.51809 * 18 17 16 20 20 C 1.50699 * 119.87864 * 180.23478 * 19 18 17 21 21 C 1.38811 * 120.24309 * 0.45698 * 19 18 17 22 22 O 1.35909 * 119.98564 * 179.76938 * 21 19 18 23 23 C 1.42905 * 116.99619 * 180.02562 * 22 21 19 24 24 C 1.38494 * 120.02400 * 359.79788 * 21 19 18 25 25 H 1.07994 * 120.00167 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99449 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00167 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46802 * 6.18366 * 3 2 1 29 29 H 1.08997 * 109.47111 * 246.18688 * 3 2 1 30 30 H 1.09001 * 109.47133 * 30.00478 * 5 4 3 31 31 H 1.09001 * 109.46620 * 149.99935 * 5 4 3 32 32 H 0.97001 * 120.00025 * 179.97438 * 9 8 6 33 33 H 1.08000 * 120.01046 * 359.94935 * 17 16 14 34 34 H 1.07997 * 119.89157 * 179.74075 * 18 17 16 35 35 H 1.09006 * 109.46819 * 270.22340 * 20 19 18 36 36 H 1.09000 * 109.47268 * 30.22400 * 20 19 18 37 37 H 1.09004 * 109.47334 * 150.22963 * 20 19 18 38 38 H 1.09002 * 109.47109 * 300.00260 * 23 22 21 39 39 H 1.09001 * 109.47390 * 60.00365 * 23 22 21 40 40 H 1.08998 * 109.46744 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.09888 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0139 1.3204 1.1149 5 6 2.5607 1.6875 2.4588 6 6 2.7025 3.1759 2.6476 7 1 3.0910 3.7873 1.8466 8 6 2.3364 3.7571 3.8431 9 7 2.4597 5.0561 4.0077 10 14 1.6651 2.6995 5.2289 11 1 2.7864 2.2341 6.0840 12 1 0.7174 3.4984 6.0467 13 1 0.9579 1.5253 4.6575 14 6 4.3051 0.9967 0.9040 15 8 5.0711 0.9096 1.8438 16 6 4.7899 0.7475 -0.4703 17 6 4.0825 -0.1062 -1.3188 18 6 4.5404 -0.3401 -2.5990 19 6 5.6935 0.2763 -3.0490 20 6 6.1841 0.0196 -4.4506 21 6 6.4033 1.1271 -2.2129 22 8 7.5386 1.7266 -2.6590 23 6 8.2188 2.5893 -1.7450 24 6 5.9555 1.3649 -0.9241 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3603 2.1306 0.1107 29 1 2.6045 1.4124 -0.9402 30 1 1.5152 1.4038 2.5798 31 1 3.1664 1.1677 3.2010 32 1 2.2018 5.4650 4.8486 33 1 3.1798 -0.5866 -0.9715 34 1 3.9945 -1.0040 -3.2529 35 1 6.8564 -0.8384 -4.4488 36 1 5.3340 -0.1862 -5.1011 37 1 6.7168 0.8978 -4.8157 38 1 7.5550 3.4019 -1.4499 39 1 8.5144 2.0226 -0.8620 40 1 9.1056 3.0016 -2.2262 41 1 6.5071 2.0263 -0.2724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292252295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:37 Heat of formation + Delta-G solvation = -38.599514 kcal Electronic energy + Delta-G solvation = -23033.120975 eV Core-core repulsion = 19685.602692 eV Total energy + Delta-G solvation = -3347.518283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72215 -40.50881 -38.24294 -37.41945 -35.15279 -33.90992 -33.80782 -31.31598 -30.46103 -28.57451 -27.99754 -26.98495 -24.73779 -23.25914 -22.82007 -21.44603 -20.42807 -19.14779 -18.90703 -17.80007 -17.39342 -17.16262 -16.76463 -16.58919 -16.17915 -15.87590 -15.52195 -15.14266 -14.65649 -14.57733 -14.46638 -14.30731 -14.18993 -13.59890 -13.16233 -13.13075 -13.08445 -12.95995 -12.86968 -12.54608 -12.43441 -12.25223 -12.15630 -12.04916 -11.88786 -11.77017 -10.88312 -10.85796 -10.35611 -9.90967 -9.55024 -9.15881 -8.37911 -6.43943 -0.08267 0.34848 1.27900 1.32134 1.34559 1.43438 1.65180 2.24062 2.28070 2.30828 2.69464 2.96260 3.44443 3.75345 3.88764 4.06054 4.09811 4.16478 4.17565 4.27464 4.36166 4.40710 4.54753 4.66431 4.67229 4.73084 4.77972 4.82085 4.88844 4.91628 5.06586 5.18117 5.28398 5.34119 5.39899 5.44191 5.45828 5.69274 5.73723 5.89080 6.18282 6.28121 6.51673 6.56864 7.11353 7.25296 8.78996 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.004904 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.238598 B = 5708.718770 C = 6821.873292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.189 4.189 3 C 0.125 3.875 4 N -0.584 5.584 5 C 0.227 3.773 6 C -0.541 4.541 7 H 0.027 0.973 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.276 1.276 12 H -0.271 1.271 13 H -0.238 1.238 14 C 0.544 3.456 15 O -0.591 6.591 16 C -0.106 4.106 17 C -0.127 4.127 18 C -0.077 4.077 19 C -0.101 4.101 20 C -0.102 4.102 21 C 0.111 3.889 22 O -0.317 6.317 23 C 0.020 3.980 24 C -0.177 4.177 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.270 0.730 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.132 0.868 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -13.218 -18.312 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.208 4.208 3 C 0.003 3.997 4 N -0.313 5.313 5 C 0.105 3.895 6 C -0.579 4.579 7 H 0.045 0.955 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.196 1.196 13 H -0.161 1.161 14 C 0.333 3.667 15 O -0.473 6.473 16 C -0.110 4.110 17 C -0.145 4.145 18 C -0.095 4.095 19 C -0.102 4.102 20 C -0.158 4.158 21 C 0.066 3.934 22 O -0.230 6.230 23 C -0.075 4.075 24 C -0.196 4.196 25 H 0.117 0.883 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.195 0.805 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.150 0.850 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.959 -13.097 -17.882 22.252 hybrid contribution 0.150 0.787 1.721 1.898 sum 2.110 -12.310 -16.162 20.425 Atomic orbital electron populations 1.24116 0.95186 1.03273 0.96840 1.23254 0.96797 0.97545 1.03209 1.21027 0.92050 0.97070 0.89545 1.47885 1.08020 1.64632 1.10715 1.19343 0.95560 0.93725 0.80869 1.21510 1.43505 0.92501 1.00389 0.95457 1.25819 0.95263 0.96242 1.00991 1.70042 1.49366 1.11940 1.26910 0.85735 0.78938 0.79662 0.78789 1.20153 1.19629 1.16080 1.18985 0.82074 0.76423 0.89228 1.90695 1.56328 1.54529 1.45730 1.19634 0.96882 1.01442 0.92992 1.21795 1.00470 0.98186 0.94059 1.21245 0.94663 0.98511 0.95032 1.19878 0.95608 0.96922 0.97764 1.20704 1.02421 1.02697 0.90023 1.18850 0.88030 0.95023 0.91527 1.86017 1.35462 1.59711 1.41831 1.23278 0.97570 0.92533 0.94099 1.21186 0.97985 1.04100 0.96378 0.88261 0.85718 0.85910 0.90707 0.88040 0.92936 0.96191 0.92117 0.82883 0.80481 0.90121 0.88920 0.91604 0.93314 0.92985 0.84960 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 14.32 67.78 0.97 -2.28 16 2 C -0.19 -4.69 8.56 25.64 0.22 -4.47 16 3 C 0.12 4.08 5.34 85.63 0.46 4.54 16 4 N -0.58 -25.47 2.45 -833.90 -2.04 -27.51 16 5 C 0.23 11.50 4.28 85.63 0.37 11.87 16 6 C -0.54 -32.63 9.94 25.60 0.25 -32.38 16 7 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 8 C 0.02 0.91 5.47 84.66 0.46 1.38 16 9 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 10 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 14 C 0.54 24.71 7.23 86.79 0.63 25.34 16 15 O -0.59 -32.33 16.58 -3.89 -0.06 -32.39 16 16 C -0.11 -3.79 4.96 -20.10 -0.10 -3.89 16 17 C -0.13 -3.27 7.48 22.54 0.17 -3.11 16 18 C -0.08 -1.50 9.68 22.22 0.21 -1.29 16 19 C -0.10 -2.22 5.90 -19.72 -0.12 -2.33 16 20 C -0.10 -1.52 9.78 71.24 0.70 -0.83 16 21 C 0.11 3.12 6.65 22.47 0.15 3.27 16 22 O -0.32 -8.07 9.52 -92.53 -0.88 -8.95 16 23 C 0.02 0.43 9.81 113.37 1.11 1.54 16 24 C -0.18 -6.09 8.71 22.63 0.20 -5.90 16 25 H 0.10 2.11 7.84 -2.91 -0.02 2.08 16 26 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.12 2.71 6.51 -2.91 -0.02 2.69 16 28 H 0.07 2.60 7.78 -2.39 -0.02 2.58 16 29 H 0.10 2.99 5.26 -2.39 -0.01 2.97 16 30 H 0.05 2.44 7.13 -2.39 -0.02 2.42 16 31 H 0.02 1.09 6.78 -2.39 -0.02 1.07 16 32 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.15 3.43 4.14 -2.91 -0.01 3.42 16 34 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.06 1.07 7.52 -2.39 -0.02 1.06 16 38 H 0.05 1.14 7.66 -2.39 -0.02 1.13 16 39 H 0.05 1.18 7.66 -2.39 -0.02 1.17 16 40 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 4.27 6.29 -2.91 -0.02 4.26 16 Total: -1.00 -80.32 340.26 5.86 -74.47 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.97 Total: 15.91 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.68 Total: -8.54 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.74 Total: -87.34 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.95 Total: -41.34 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -80.32 5.86 -74.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292252295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.868 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds