Wall clock time and date at job start Tue Mar 31 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50692 * 120.00479 * 2 1 4 4 N 1.46495 * 109.47123 * 124.99889 * 3 2 1 5 5 C 1.46500 * 120.00164 * 270.00418 * 4 3 2 6 6 C 1.50704 * 109.47194 * 269.99689 * 5 4 3 7 7 H 1.07996 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00213 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99534 * 0.02562 * 8 6 5 10 10 Si 1.86788 * 120.00008 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47327 * 90.00131 * 10 8 6 12 12 H 1.48506 * 109.46898 * 210.00249 * 10 8 6 13 13 H 1.48498 * 109.47367 * 329.99819 * 10 8 6 14 14 C 1.34782 * 119.99751 * 90.00478 * 4 3 2 15 15 O 1.21277 * 119.99690 * 179.97438 * 14 4 3 16 16 C 1.50694 * 119.99926 * 0.02562 * 14 4 3 17 17 O 1.42901 * 109.46937 * 180.02562 * 16 14 4 18 18 C 1.35905 * 116.99604 * 180.02562 * 17 16 14 19 19 C 1.38723 * 120.05884 * 359.72201 * 18 17 16 20 20 C 1.38145 * 119.94323 * 179.77076 * 19 18 17 21 21 C 1.38260 * 120.05692 * 0.50972 * 20 19 18 22 22 C 1.50706 * 119.94706 * 179.76915 * 21 20 19 23 23 C 1.38268 * 120.10972 * 359.74026 * 21 20 19 24 24 C 1.38139 * 120.05510 * 0.02562 * 23 21 20 25 25 H 1.07993 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00026 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99372 * 180.02562 * 2 1 3 28 28 H 1.09011 * 109.46892 * 5.00395 * 3 2 1 29 29 H 1.08996 * 109.47674 * 245.00954 * 3 2 1 30 30 H 1.08999 * 109.47428 * 30.00004 * 5 4 3 31 31 H 1.09000 * 109.47343 * 150.00263 * 5 4 3 32 32 H 0.96999 * 120.00008 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47314 * 60.00033 * 16 14 4 34 34 H 1.08998 * 109.47471 * 300.00068 * 16 14 4 35 35 H 1.08001 * 120.02769 * 0.02562 * 19 18 17 36 36 H 1.08006 * 119.97076 * 180.25587 * 20 19 18 37 37 H 1.08999 * 109.46991 * 269.97359 * 22 21 20 38 38 H 1.09001 * 109.46891 * 29.97509 * 22 21 20 39 39 H 1.08994 * 109.47121 * 149.97471 * 22 21 20 40 40 H 1.08008 * 119.97007 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.02451 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5590 1.8647 2.4248 6 6 2.8445 3.3434 2.4805 7 1 3.3036 3.8368 1.6366 8 6 2.5187 4.0665 3.6084 9 7 1.9592 3.4656 4.6358 10 14 2.8720 5.8994 3.6770 11 1 1.6991 6.6493 3.1601 12 1 3.1357 6.3003 5.0824 13 1 4.0620 6.2058 2.8433 14 6 4.2498 0.8659 0.9823 15 8 5.0200 0.8885 1.9188 16 6 4.6973 0.3182 -0.3484 17 8 6.0573 -0.1104 -0.2540 18 6 6.6185 -0.6333 -1.3759 19 6 5.8739 -0.7372 -2.5417 20 6 6.4483 -1.2648 -3.6820 21 6 7.7608 -1.6988 -3.6590 22 6 8.3833 -2.2787 -4.9030 23 6 8.5035 -1.6011 -2.4968 24 6 7.9352 -1.0698 -1.3553 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6964 2.5460 31 1 3.0991 1.3601 3.2259 32 1 1.7297 3.9744 5.4291 33 1 4.6127 1.0952 -1.1081 34 1 4.0682 -0.5284 -0.6230 35 1 4.8473 -0.4022 -2.5590 36 1 5.8702 -1.3421 -4.5910 37 1 8.2189 -3.3561 -4.9231 38 1 7.9271 -1.8250 -5.7829 39 1 9.4539 -2.0745 -4.9026 40 1 9.5285 -1.9412 -2.4813 41 1 8.5156 -0.9941 -0.4477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292478842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:40 Heat of formation + Delta-G solvation = -46.773713 kcal Electronic energy + Delta-G solvation = -22215.457237 eV Core-core repulsion = 18867.584494 eV Total energy + Delta-G solvation = -3347.872743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47700 -40.45642 -38.52815 -37.27138 -35.15234 -33.72406 -32.97656 -31.99895 -30.77429 -28.74179 -27.01425 -26.85234 -24.86464 -23.59611 -22.16999 -21.21962 -20.11132 -19.40567 -18.65194 -17.97022 -17.33228 -17.32881 -16.66717 -16.26725 -16.01793 -15.91699 -15.41240 -15.16355 -14.62157 -14.51769 -14.39622 -14.23939 -14.18060 -13.66339 -13.36876 -13.11563 -13.02822 -12.87184 -12.83625 -12.59173 -12.39590 -12.27772 -12.23200 -11.81682 -11.76612 -11.69991 -10.72225 -10.65973 -10.33724 -9.95150 -9.57418 -9.00976 -8.24714 -6.39389 0.39766 0.45376 1.25968 1.35545 1.39052 1.48825 1.61373 1.76941 2.36351 2.72224 2.79994 3.05566 3.46501 3.79872 3.93674 3.99146 4.00742 4.09237 4.12504 4.24194 4.38809 4.40929 4.48153 4.63733 4.82294 4.85815 4.93236 4.95761 5.04767 5.12769 5.18282 5.19919 5.39117 5.41123 5.46176 5.70234 5.70404 5.72620 5.87600 5.92490 6.02473 6.38276 6.60915 6.70070 7.21231 7.35880 8.82952 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.003521 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.981259 B = 7950.820138 C = 8814.785919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.591 5.591 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.057 3.943 17 O -0.325 6.325 18 C 0.097 3.903 19 C -0.209 4.209 20 C -0.082 4.082 21 C -0.132 4.132 22 C -0.106 4.106 23 C -0.084 4.084 24 C -0.169 4.169 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.029 0.971 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.149 0.851 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.339 -10.977 -22.364 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.020 4.020 17 O -0.239 6.239 18 C 0.052 3.948 19 C -0.228 4.228 20 C -0.100 4.100 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.101 4.101 24 C -0.188 4.188 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.047 0.953 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.741 -10.893 -21.505 24.568 hybrid contribution -0.100 0.995 0.984 1.403 sum 4.641 -9.898 -20.521 23.251 Atomic orbital electron populations 1.24073 0.95499 1.03001 0.97628 1.23316 0.96905 0.98118 1.02480 1.20963 0.92884 0.96843 0.88699 1.48127 1.10866 1.59516 1.13696 1.18753 0.94138 0.92750 0.79966 1.21706 1.40790 0.94309 1.01588 0.92675 1.25860 0.94597 1.03849 0.94784 1.70051 1.42707 1.38153 1.05809 0.85403 0.78905 0.78994 0.77446 1.18529 1.20708 1.19867 1.20763 0.82211 0.78463 0.90121 1.90679 1.54006 1.57629 1.43987 1.22582 0.82425 1.01949 0.95090 1.86139 1.27284 1.76268 1.34190 1.19431 0.93819 0.95667 0.85896 1.21522 1.01592 1.06833 0.92837 1.21199 0.94811 0.96022 0.97977 1.20256 0.94700 1.01498 0.96723 1.20762 1.00992 1.01025 0.93490 1.21120 1.00682 0.97307 0.91036 1.20658 0.93093 1.04401 1.00652 0.88133 0.86518 0.86724 0.89745 0.87236 0.95338 0.98641 0.92346 0.86634 0.86269 0.83521 0.82960 0.90504 0.90510 0.90866 0.83291 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.77 0.97 -2.68 16 2 C -0.19 -4.73 9.74 25.64 0.25 -4.48 16 3 C 0.13 3.78 5.65 85.63 0.48 4.26 16 4 N -0.59 -25.13 2.44 -830.52 -2.03 -27.16 16 5 C 0.26 14.44 5.16 85.63 0.44 14.88 16 6 C -0.55 -31.69 9.39 25.60 0.24 -31.45 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 10 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.50 21.77 7.75 87.65 0.68 22.44 16 15 O -0.58 -32.81 16.08 16.02 0.26 -32.55 16 16 C 0.06 1.75 3.77 71.23 0.27 2.02 16 17 O -0.33 -11.59 9.67 -73.44 -0.71 -12.30 16 18 C 0.10 2.75 6.69 22.50 0.15 2.90 16 19 C -0.21 -4.47 9.04 22.36 0.20 -4.27 16 20 C -0.08 -1.41 9.69 22.25 0.22 -1.20 16 21 C -0.13 -2.23 5.88 -19.85 -0.12 -2.35 16 22 C -0.11 -1.09 10.01 71.24 0.71 -0.37 16 23 C -0.08 -1.64 9.69 22.25 0.22 -1.43 16 24 C -0.17 -4.44 9.99 22.36 0.22 -4.21 16 25 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 26 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 27 H 0.11 2.63 7.83 -2.91 -0.02 2.61 16 28 H 0.08 2.63 7.72 -2.38 -0.02 2.61 16 29 H 0.11 2.38 6.44 -2.39 -0.02 2.37 16 30 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 31 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.12 2.80 6.93 -2.39 -0.02 2.78 16 34 H 0.12 2.77 7.29 -2.39 -0.02 2.75 16 35 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -79.51 353.07 6.24 -73.27 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.01 Total: 12.72 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.40 Total: -4.98 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.74 Total: -83.44 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.45 Total: -44.85 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.51 6.24 -73.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292478842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.495 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds