Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38015 * 119.89444 * 2 1 4 4 C 1.38243 * 119.96494 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.98212 * 0.10473 * 4 3 2 6 6 C 1.38460 * 120.30987 * 359.96981 * 5 4 3 7 7 C 1.38408 * 119.84114 * 359.85096 * 6 5 4 8 8 O 1.35841 * 121.80266 * 180.31943 * 7 6 5 9 9 C 1.42826 * 117.86973 * 342.80294 * 8 7 6 10 10 C 1.53412 * 108.39409 * 49.13217 * 9 8 7 11 11 H 1.09004 * 109.69794 * 55.02104 * 10 9 8 12 12 N 1.46493 * 109.70376 * 175.58081 * 10 9 8 13 13 C 1.34770 * 120.00392 * 275.00305 * 12 10 9 14 14 O 1.21283 * 120.00059 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00483 * 179.97438 * 13 12 10 16 16 C 1.52996 * 109.47491 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.50775 * 118.75757 * 179.62420 * 6 5 4 26 26 H 1.08992 * 109.47455 * 270.01727 * 1 2 3 27 27 H 1.09001 * 109.47116 * 30.01714 * 1 2 3 28 28 H 1.09008 * 109.46917 * 150.01469 * 1 2 3 29 29 H 1.08007 * 120.01903 * 359.96298 * 3 2 1 30 30 H 1.08002 * 120.00765 * 180.08136 * 4 3 2 31 31 H 1.08001 * 119.84688 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.68753 * 289.40741 * 9 8 7 33 33 H 1.09006 * 109.71015 * 168.87204 * 9 8 7 34 34 H 0.97000 * 120.00041 * 94.99634 * 12 10 9 35 35 H 1.09004 * 109.46801 * 59.99704 * 15 13 12 36 36 H 1.09000 * 109.47461 * 300.00236 * 15 13 12 37 37 H 1.09004 * 109.47066 * 60.00201 * 16 15 13 38 38 H 1.08994 * 109.47405 * 300.00031 * 16 15 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.43558 * 42.24945 * 25 6 5 41 41 H 1.08994 * 109.44378 * 282.36220 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.1965 0.0000 4 6 3.5773 1.1982 0.0005 5 6 4.2691 0.0025 -0.0011 6 6 3.5844 -1.2010 -0.0027 7 6 2.2003 -1.2059 0.0005 8 8 1.4886 -2.3629 0.0056 9 6 2.1652 -3.5647 -0.3657 10 6 3.4774 -3.6455 0.4249 11 1 3.2688 -3.5669 1.4920 12 7 4.1452 -4.9190 0.1449 13 6 3.8107 -6.0229 0.8419 14 8 2.9573 -5.9619 1.7015 15 6 4.4972 -7.3330 0.5535 16 6 3.9373 -8.4165 1.4772 17 6 4.6234 -9.7268 1.1883 18 1 5.3832 -9.7812 0.4226 19 6 4.2856 -10.8548 1.9057 20 7 3.3607 -10.7885 2.8382 21 14 5.1415 -12.4772 1.5527 22 1 6.1352 -12.2865 0.4658 23 1 5.8342 -12.9485 2.7789 24 1 4.1361 -13.4864 1.1333 25 6 4.3745 -2.4851 -0.0131 26 1 -0.3634 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6534 2.1311 -0.0006 30 1 4.1162 2.1341 0.0019 31 1 5.3491 0.0063 -0.0011 32 1 2.3808 -3.5496 -1.4341 33 1 1.5407 -4.4263 -0.1295 34 1 4.8280 -4.9677 -0.5423 35 1 5.5685 -7.2274 0.7254 36 1 4.3220 -7.6142 -0.4849 37 1 2.8661 -8.5222 1.3057 38 1 4.1130 -8.1352 2.5155 39 1 3.1228 -11.5821 3.3427 40 1 5.2166 -2.3984 0.6735 41 1 4.7463 -2.6742 -1.0201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293344359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -71.106904 kcal Electronic energy + Delta-G solvation = -22170.279399 eV Core-core repulsion = 18821.351490 eV Total energy + Delta-G solvation = -3348.927909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06313 -39.23321 -37.69023 -35.62838 -33.48433 -33.38354 -31.49122 -31.05869 -29.70051 -27.04714 -25.99771 -25.78061 -23.61733 -21.86890 -21.22035 -20.39914 -19.60644 -17.95480 -17.08321 -16.86159 -16.14847 -15.67736 -15.31545 -15.18727 -14.74306 -14.43719 -14.40564 -14.05532 -13.82591 -13.53952 -13.22997 -13.11218 -12.73528 -12.52565 -12.40553 -12.18163 -11.77217 -11.52012 -11.45356 -11.18630 -10.99933 -10.93417 -10.82160 -10.59502 -9.99666 -9.70754 -9.23433 -9.05778 -8.98045 -8.84763 -8.34452 -8.26381 -5.98097 -4.02628 1.05638 1.21172 3.01230 3.13168 3.31292 3.38008 3.40507 3.42682 3.55434 4.32943 4.45113 4.46348 4.58491 4.63429 4.80220 4.92899 5.05108 5.12593 5.21779 5.33258 5.37025 5.37376 5.47736 5.52210 5.54490 5.62650 5.72745 5.88998 6.01812 6.15408 6.17513 6.19110 6.21804 6.31014 6.49618 6.64271 6.84498 7.28672 7.72001 7.76375 7.83055 8.04615 8.35735 8.67652 9.05990 9.61136 11.12857 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.002672 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.219180 B =10476.506027 C =10900.598836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.115 4.115 3 C -0.092 4.092 4 C -0.151 4.151 5 C -0.089 4.089 6 C -0.153 4.153 7 C 0.132 3.868 8 O -0.306 6.306 9 C 0.052 3.948 10 C 0.111 3.889 11 H 0.100 0.900 12 N -0.736 5.736 13 C 0.510 3.490 14 O -0.528 6.528 15 C -0.129 4.129 16 C 0.036 3.964 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.083 4.083 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.400 0.600 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.089 0.911 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 24.554 -9.487 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.169 4.169 5 C -0.107 4.107 6 C -0.155 4.155 7 C 0.087 3.913 8 O -0.218 6.218 9 C -0.024 4.024 10 C 0.006 3.994 11 H 0.118 0.882 12 N -0.392 5.392 13 C 0.299 3.701 14 O -0.403 6.403 15 C -0.169 4.169 16 C -0.001 4.001 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.302 24.429 -8.657 25.920 hybrid contribution 1.097 -0.986 -0.514 1.562 sum 0.795 23.443 -9.171 25.185 Atomic orbital electron populations 1.20621 0.90477 1.02700 1.02453 1.19446 0.96651 0.90452 1.05003 1.20845 0.94182 0.96728 0.99213 1.20971 0.94224 0.97884 1.03810 1.20857 0.99717 0.91234 0.98860 1.19704 0.92326 0.95773 1.07648 1.18597 0.89526 0.86124 0.97067 1.86054 1.38448 1.13832 1.83477 1.23466 0.94917 0.85524 0.98522 1.21412 0.92240 0.84056 1.01742 0.88208 1.46170 1.43099 1.08222 1.41684 1.21690 0.82611 0.85709 0.80140 1.90696 1.32137 1.85481 1.31969 1.21878 1.00336 0.91484 1.03200 1.18912 0.96727 0.90349 0.94154 1.21249 1.21681 0.93894 1.19724 0.92545 1.25035 0.95193 0.99105 0.95102 1.70009 1.30770 1.29196 1.22795 0.86532 0.79461 0.83828 0.78111 1.19758 1.21011 1.20999 1.20742 0.97957 0.90523 1.02856 0.91272 0.91810 0.91017 0.85552 0.85910 0.85814 0.91692 0.86731 0.76593 0.90112 0.90098 0.95787 0.95794 0.92974 0.89269 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.75 36.00 0.35 -0.62 16 2 C -0.11 -1.24 5.90 -104.38 -0.62 -1.86 16 3 C -0.09 -0.83 9.69 -39.66 -0.38 -1.21 16 4 C -0.15 -1.29 10.04 -39.61 -0.40 -1.69 16 5 C -0.09 -0.82 9.67 -39.53 -0.38 -1.20 16 6 C -0.15 -1.67 5.75 -104.44 -0.60 -2.27 16 7 C 0.13 1.63 6.46 -39.20 -0.25 1.37 16 8 O -0.31 -4.11 9.20 -19.24 -0.18 -4.29 16 9 C 0.05 0.66 6.62 37.37 0.25 0.91 16 10 C 0.11 1.41 2.68 -67.68 -0.18 1.23 16 11 H 0.10 1.55 7.61 -51.93 -0.40 1.16 16 12 N -0.74 -9.61 5.10 -53.56 -0.27 -9.88 16 13 C 0.51 9.37 7.80 -10.99 -0.09 9.28 16 14 O -0.53 -12.13 15.66 5.55 0.09 -12.04 16 15 C -0.13 -2.52 5.64 -27.89 -0.16 -2.68 16 16 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 17 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.08 -0.81 5.35 -27.81 -0.15 -0.96 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.71 7.45 -51.92 -0.39 0.33 16 29 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.40 3.88 8.57 -40.82 -0.35 3.53 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -34.16 343.36 -8.77 -42.93 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.16 Total: 0.61 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.14 Total: -12.43 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.46 Total: -36.48 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.09 Total: -16.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.16 -8.77 -42.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293344359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.180 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds