Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38015 * 119.89444 * 2 1 4 4 C 1.38243 * 119.96494 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.98212 * 0.10473 * 4 3 2 6 6 C 1.38460 * 120.30987 * 359.96981 * 5 4 3 7 7 C 1.38408 * 119.84114 * 359.85096 * 6 5 4 8 8 O 1.35841 * 121.80266 * 180.31943 * 7 6 5 9 9 C 1.42826 * 117.86973 * 342.80294 * 8 7 6 10 10 C 1.53412 * 108.39409 * 49.13217 * 9 8 7 11 11 H 1.09004 * 109.69794 * 55.02104 * 10 9 8 12 12 N 1.46493 * 109.70376 * 175.58081 * 10 9 8 13 13 C 1.34770 * 120.00392 * 275.00305 * 12 10 9 14 14 O 1.21283 * 120.00059 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00483 * 179.97438 * 13 12 10 16 16 C 1.52996 * 109.47491 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.50775 * 118.75757 * 179.62420 * 6 5 4 26 26 H 1.08992 * 109.47455 * 270.01727 * 1 2 3 27 27 H 1.09001 * 109.47116 * 30.01714 * 1 2 3 28 28 H 1.09008 * 109.46917 * 150.01469 * 1 2 3 29 29 H 1.08007 * 120.01903 * 359.96298 * 3 2 1 30 30 H 1.08002 * 120.00765 * 180.08136 * 4 3 2 31 31 H 1.08001 * 119.84688 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.68753 * 289.40741 * 9 8 7 33 33 H 1.09006 * 109.71015 * 168.87204 * 9 8 7 34 34 H 0.97000 * 120.00041 * 94.99634 * 12 10 9 35 35 H 1.09004 * 109.46801 * 59.99704 * 15 13 12 36 36 H 1.09000 * 109.47461 * 300.00236 * 15 13 12 37 37 H 1.09004 * 109.47066 * 60.00201 * 16 15 13 38 38 H 1.08994 * 109.47405 * 300.00031 * 16 15 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.43558 * 42.24945 * 25 6 5 41 41 H 1.08994 * 109.44378 * 282.36220 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.1965 0.0000 4 6 3.5773 1.1982 0.0005 5 6 4.2691 0.0025 -0.0011 6 6 3.5844 -1.2010 -0.0027 7 6 2.2003 -1.2059 0.0005 8 8 1.4886 -2.3629 0.0056 9 6 2.1652 -3.5647 -0.3657 10 6 3.4774 -3.6455 0.4249 11 1 3.2688 -3.5669 1.4920 12 7 4.1452 -4.9190 0.1449 13 6 3.8107 -6.0229 0.8419 14 8 2.9573 -5.9619 1.7015 15 6 4.4972 -7.3330 0.5535 16 6 3.9373 -8.4165 1.4772 17 6 4.6234 -9.7268 1.1883 18 1 5.3832 -9.7812 0.4226 19 6 4.2856 -10.8548 1.9057 20 7 3.3607 -10.7885 2.8382 21 14 5.1415 -12.4772 1.5527 22 1 6.1352 -12.2865 0.4658 23 1 5.8342 -12.9485 2.7789 24 1 4.1361 -13.4864 1.1333 25 6 4.3745 -2.4851 -0.0131 26 1 -0.3634 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6534 2.1311 -0.0006 30 1 4.1162 2.1341 0.0019 31 1 5.3491 0.0063 -0.0011 32 1 2.3808 -3.5496 -1.4341 33 1 1.5407 -4.4263 -0.1295 34 1 4.8280 -4.9677 -0.5423 35 1 5.5685 -7.2274 0.7254 36 1 4.3220 -7.6142 -0.4849 37 1 2.8661 -8.5222 1.3057 38 1 4.1130 -8.1352 2.5155 39 1 3.1228 -11.5821 3.3427 40 1 5.2166 -2.3984 0.6735 41 1 4.7463 -2.6742 -1.0201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293344359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = -93.511283 kcal Electronic energy + Delta-G solvation = -22171.250926 eV Core-core repulsion = 18821.351490 eV Total energy + Delta-G solvation = -3349.899436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96811 -40.60883 -38.56259 -36.75854 -35.55578 -34.36207 -33.06806 -32.13335 -30.85732 -27.87457 -27.59275 -26.86550 -24.80675 -23.38870 -22.18629 -21.50598 -20.90817 -18.84589 -18.80954 -17.91743 -17.60595 -16.97870 -16.51491 -16.48158 -16.09254 -15.82392 -15.39841 -14.92448 -14.85499 -14.55590 -14.43660 -14.18368 -14.12826 -13.84226 -13.57801 -13.23949 -13.23055 -12.85919 -12.57406 -12.44891 -12.31898 -12.24925 -11.93464 -11.87563 -11.68262 -11.63567 -11.28589 -10.77476 -10.58340 -10.20576 -9.56210 -9.07611 -8.18343 -6.32238 0.33717 0.45674 1.42394 1.43665 1.56917 1.64734 1.95125 2.38827 2.46252 2.76331 3.15049 3.45455 3.54337 3.77640 3.79598 3.97106 4.08641 4.16514 4.33670 4.41494 4.44011 4.47154 4.51778 4.56576 4.64155 4.76683 4.79686 4.84314 4.87222 4.99482 5.09199 5.30487 5.34997 5.42516 5.50726 5.51422 5.60396 5.63341 5.85683 5.89906 6.17284 6.42559 6.56004 6.86960 7.29686 7.38274 8.94580 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.002672 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.219180 B =10476.506027 C =10900.598836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.133 4.133 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.092 4.092 6 C -0.165 4.165 7 C 0.097 3.903 8 O -0.326 6.326 9 C 0.055 3.945 10 C 0.114 3.886 11 H 0.064 0.936 12 N -0.706 5.706 13 C 0.513 3.487 14 O -0.586 6.586 15 C -0.117 4.117 16 C 0.040 3.960 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.251 1.251 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.073 4.073 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.422 0.578 35 H 0.108 0.892 36 H 0.109 0.891 37 H -0.018 1.018 38 H -0.019 1.019 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 26.080 -11.785 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C -0.111 4.111 4 C -0.166 4.166 5 C -0.110 4.110 6 C -0.166 4.166 7 C 0.052 3.948 8 O -0.239 6.239 9 C -0.022 4.022 10 C 0.008 3.992 11 H 0.082 0.918 12 N -0.362 5.362 13 C 0.302 3.698 14 O -0.465 6.465 15 C -0.157 4.157 16 C 0.002 3.998 17 C -0.578 4.578 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.174 1.174 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.110 4.110 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.475 26.002 -11.017 28.348 hybrid contribution 0.214 -1.318 0.213 1.352 sum 2.689 24.684 -10.804 27.079 Atomic orbital electron populations 1.20622 0.90063 1.03054 1.02373 1.19765 0.97381 0.90811 1.05420 1.21195 0.94808 0.96922 0.98223 1.21386 0.94193 0.98933 1.02051 1.21186 1.01053 0.90696 0.98034 1.19900 0.91875 0.96900 1.07955 1.18972 0.90573 0.85926 0.99301 1.86011 1.39266 1.14432 1.84207 1.23349 0.94238 0.84951 0.99642 1.21378 0.93261 0.84620 0.99908 0.91764 1.45756 1.42629 1.07056 1.40737 1.21459 0.81817 0.86689 0.79856 1.90688 1.34709 1.86328 1.34737 1.21640 1.01360 0.89943 1.02746 1.18709 0.94634 0.92923 0.93505 1.21755 1.21811 0.94389 1.19873 0.90408 1.26158 0.95885 1.03852 0.94740 1.70192 1.32846 1.30539 1.24328 0.85268 0.78424 0.78060 0.78453 1.17447 1.20739 1.20728 1.20718 0.97197 0.88487 1.04594 0.91569 0.89558 0.92525 0.83092 0.83046 0.83309 0.89423 0.89370 0.73930 0.87395 0.87321 0.99980 1.00054 0.92907 0.88025 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.75 71.23 0.69 -1.23 16 2 C -0.13 -2.80 5.90 -19.71 -0.12 -2.92 16 3 C -0.09 -1.47 9.69 22.22 0.22 -1.26 16 4 C -0.15 -2.05 10.04 22.25 0.22 -1.83 16 5 C -0.09 -1.42 9.67 22.30 0.22 -1.20 16 6 C -0.16 -3.32 5.75 -19.75 -0.11 -3.43 16 7 C 0.10 2.37 6.46 22.52 0.15 2.52 16 8 O -0.33 -9.21 9.20 -91.77 -0.84 -10.05 16 9 C 0.05 1.42 6.62 72.12 0.48 1.90 16 10 C 0.11 2.87 2.68 45.16 0.12 3.00 16 11 H 0.06 2.11 7.61 -2.39 -0.02 2.09 16 12 N -0.71 -17.63 5.10 -441.77 -2.25 -19.89 16 13 C 0.51 19.14 7.80 87.66 0.68 19.82 16 14 O -0.59 -28.63 15.66 -3.04 -0.05 -28.67 16 15 C -0.12 -4.51 5.64 29.85 0.17 -4.34 16 16 C 0.04 2.21 4.26 29.85 0.13 2.33 16 17 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 18 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 19 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 20 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 21 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 22 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.07 -1.25 5.35 29.90 0.16 -1.09 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.06 1.19 7.45 -2.38 -0.02 1.17 16 29 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.42 6.86 8.57 -92.71 -0.79 6.07 16 35 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 36 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 37 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16 38 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 39 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -79.85 343.36 3.10 -76.76 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.23 Total: 13.24 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.70 Total: -18.05 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.97 Total: -79.42 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.89 Total: -38.73 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -79.85 3.10 -76.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293344359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.756 kcal (2) G-P(sol) polarization free energy of solvation -79.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds