Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 4 18 18 C 1.38288 * 119.97310 * 90.00129 * 17 16 14 19 19 C 1.38242 * 120.10960 * 179.97438 * 18 17 16 20 20 C 1.38160 * 120.05911 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.03268 * 180.02562 * 20 19 18 22 22 C 1.38720 * 119.94321 * 0.02603 * 20 19 18 23 23 O 1.35898 * 120.05750 * 180.02562 * 22 20 19 24 24 C 1.38125 * 119.96773 * 269.71965 * 17 16 14 25 25 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 26 26 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.08002 * 119.94236 * 359.97082 * 18 17 16 36 36 H 1.08003 * 119.96785 * 180.02562 * 19 18 17 37 37 H 1.09006 * 109.46954 * 89.99954 * 21 20 19 38 38 H 1.08995 * 109.47423 * 209.99870 * 21 20 19 39 39 H 1.08999 * 109.46836 * 330.00358 * 21 20 19 40 40 H 0.96702 * 113.99971 * 89.99999 * 23 22 20 41 41 H 1.07996 * 120.03168 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 3.5004 6.3308 2.4025 12 1 1.6020 6.6412 3.8794 13 1 3.7964 6.1838 4.8046 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1352 -0.1226 -0.2520 18 6 6.4312 -1.4222 0.1166 19 6 7.7476 -1.8347 0.2068 20 6 8.7709 -0.9492 -0.0718 21 6 10.2057 -1.3996 0.0261 22 6 8.4766 0.3550 -0.4417 23 8 9.4813 1.2277 -0.7168 24 6 7.1544 0.7652 -0.5361 25 1 -0.5399 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 1.7319 3.9742 5.4300 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 5.6327 -2.1159 0.3345 36 1 7.9762 -2.8503 0.4945 37 1 10.5295 -1.7933 -0.9374 38 1 10.8342 -0.5532 0.3026 39 1 10.2910 -2.1784 0.7840 40 1 9.7527 1.2352 -1.6449 41 1 6.9226 1.7788 -0.8280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293738680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -39.340718 kcal Electronic energy + Delta-G solvation = -22542.411483 eV Core-core repulsion = 19194.861059 eV Total energy + Delta-G solvation = -3347.550424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04204 -38.90880 -36.71293 -35.60813 -33.56399 -33.07132 -32.04719 -29.86886 -29.77264 -27.50086 -25.63410 -25.01169 -22.70902 -22.58168 -20.93511 -19.95830 -18.50183 -17.76421 -16.54296 -16.27019 -16.04287 -15.90202 -15.36007 -15.00868 -14.66984 -14.34182 -14.07008 -13.78791 -13.32437 -13.10504 -12.73745 -12.65636 -12.50344 -12.31316 -12.05396 -11.66994 -11.57565 -11.45880 -11.29641 -11.18440 -10.98749 -10.85591 -10.60010 -10.37631 -10.16676 -9.60556 -9.19714 -8.98286 -8.63799 -8.41740 -8.28017 -7.66707 -6.02405 -4.06956 1.33044 1.43824 2.43916 3.31062 3.38300 3.40897 3.46431 3.63532 4.08210 4.26962 4.47495 4.79295 4.87327 5.02763 5.10649 5.19652 5.29526 5.33324 5.39009 5.47985 5.48395 5.54055 5.62394 5.67201 5.72988 5.83012 6.00406 6.04720 6.16305 6.19607 6.42146 6.56398 6.69026 6.77943 6.89431 6.91797 7.10941 7.47382 7.57151 7.69198 7.94323 8.25655 8.42478 8.92637 9.11823 9.58178 11.05769 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004541 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.248217 B = 6165.053984 C = 7524.672191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.530 6.530 16 C -0.106 4.106 17 C -0.043 4.043 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.109 4.109 22 C 0.102 3.898 23 O -0.495 6.495 24 C -0.125 4.125 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.383 0.617 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 -10.629 -15.590 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.011 3.989 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.406 6.406 16 C -0.146 4.146 17 C -0.043 4.043 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.166 4.166 22 C 0.058 3.942 23 O -0.304 6.304 24 C -0.144 4.144 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.238 0.762 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.270 -10.427 -14.269 19.110 hybrid contribution -0.017 0.978 -0.295 1.021 sum 7.253 -9.450 -14.564 18.815 Atomic orbital electron populations 1.23818 0.95864 1.01757 1.00610 1.23433 0.96401 0.99036 0.99880 1.20589 0.93170 0.95318 0.89777 1.48231 1.10442 1.60400 1.13576 1.19266 0.95324 0.93751 0.78812 1.21476 1.40351 0.93355 1.01232 0.92438 1.24933 0.95077 0.98737 0.95338 1.69945 1.42213 1.36043 1.05153 0.86460 0.77880 0.85025 0.78167 1.19804 1.20974 1.20873 1.20169 0.82372 0.78884 0.89332 1.90710 1.52406 1.55675 1.41824 1.20808 0.93522 1.02382 0.97891 1.19224 0.93966 0.93425 0.97734 1.20973 0.96538 0.95749 0.99564 1.20834 0.92042 0.99143 1.00391 1.20138 0.96456 0.92942 1.02410 1.20649 0.92414 1.01769 1.01723 1.18194 0.86832 0.88077 1.01135 1.84844 1.52762 1.61158 1.31668 1.21241 0.91625 0.99764 1.01748 0.88282 0.88807 0.87819 0.89463 0.90779 0.95009 0.93941 0.92804 0.88535 0.88504 0.86008 0.85858 0.91701 0.91045 0.91651 0.76183 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 29.01 0.42 -1.89 16 2 C -0.17 -2.31 9.76 -36.03 -0.35 -2.67 16 3 C 0.14 2.15 5.66 -5.19 -0.03 2.12 16 4 N -0.59 -12.52 2.44 -176.43 -0.43 -12.95 16 5 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 6 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 10 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.51 10.54 7.66 -10.98 -0.08 10.46 16 15 O -0.53 -13.71 15.61 5.55 0.09 -13.62 16 16 C -0.11 -1.56 4.38 -29.03 -0.13 -1.69 16 17 C -0.04 -0.66 4.37 -104.64 -0.46 -1.11 16 18 C -0.11 -1.54 9.70 -39.56 -0.38 -1.93 16 19 C -0.11 -1.36 9.70 -39.61 -0.38 -1.74 16 20 C -0.12 -1.55 5.89 -104.47 -0.62 -2.17 16 21 C -0.11 -1.09 9.79 36.01 0.35 -0.74 16 22 C 0.10 1.45 6.68 -39.21 -0.26 1.19 16 23 O -0.50 -6.19 12.55 -19.42 -0.24 -6.44 16 24 C -0.13 -1.92 9.64 -39.43 -0.38 -2.30 16 25 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 26 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.10 1.32 7.85 -52.49 -0.41 0.91 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.95 6.43 -51.93 -0.33 0.62 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.10 1.15 7.77 -51.93 -0.40 0.75 16 34 H 0.10 1.23 7.34 -51.93 -0.38 0.84 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 39 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.38 2.70 9.06 45.56 0.41 3.11 16 41 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -35.83 353.92 -7.50 -43.33 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.20 Total: 3.06 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.75 Total: -9.67 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.31 Total: -39.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.16 Total: -20.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.83 -7.50 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.986 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds