Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 4 18 18 C 1.38288 * 119.97310 * 90.00129 * 17 16 14 19 19 C 1.38242 * 120.10960 * 179.97438 * 18 17 16 20 20 C 1.38160 * 120.05911 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.03268 * 180.02562 * 20 19 18 22 22 C 1.38720 * 119.94321 * 0.02603 * 20 19 18 23 23 O 1.35898 * 120.05750 * 180.02562 * 22 20 19 24 24 C 1.38125 * 119.96773 * 269.71965 * 17 16 14 25 25 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 26 26 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.08002 * 119.94236 * 359.97082 * 18 17 16 36 36 H 1.08003 * 119.96785 * 180.02562 * 19 18 17 37 37 H 1.09006 * 109.46954 * 89.99954 * 21 20 19 38 38 H 1.08995 * 109.47423 * 209.99870 * 21 20 19 39 39 H 1.08999 * 109.46836 * 330.00358 * 21 20 19 40 40 H 0.96702 * 113.99971 * 89.99999 * 23 22 20 41 41 H 1.07996 * 120.03168 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 3.5004 6.3308 2.4025 12 1 1.6020 6.6412 3.8794 13 1 3.7964 6.1838 4.8046 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1352 -0.1226 -0.2520 18 6 6.4312 -1.4222 0.1166 19 6 7.7476 -1.8347 0.2068 20 6 8.7709 -0.9492 -0.0718 21 6 10.2057 -1.3996 0.0261 22 6 8.4766 0.3550 -0.4417 23 8 9.4813 1.2277 -0.7168 24 6 7.1544 0.7652 -0.5361 25 1 -0.5399 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 1.7319 3.9742 5.4300 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 5.6327 -2.1159 0.3345 36 1 7.9762 -2.8503 0.4945 37 1 10.5295 -1.7933 -0.9374 38 1 10.8342 -0.5532 0.3026 39 1 10.2910 -2.1784 0.7840 40 1 9.7527 1.2352 -1.6449 41 1 6.9226 1.7788 -0.8280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293738680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = -63.077228 kcal Electronic energy + Delta-G solvation = -22543.440775 eV Core-core repulsion = 19194.861059 eV Total energy + Delta-G solvation = -3348.579716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22970 -40.33456 -37.76702 -37.12400 -35.18956 -34.43909 -33.64546 -31.08911 -30.85772 -29.25733 -26.91727 -26.41285 -24.50688 -23.65676 -22.04817 -21.12163 -19.96003 -18.83712 -18.65131 -17.83219 -17.32512 -17.12661 -16.67388 -16.22785 -16.06826 -15.94243 -15.44419 -14.84806 -14.43821 -14.42607 -14.18183 -14.07741 -13.81950 -13.46201 -13.28310 -13.14144 -12.95742 -12.86094 -12.64384 -12.59952 -12.51333 -12.24828 -12.22321 -12.12702 -11.65682 -11.36889 -10.66385 -10.65202 -10.29087 -9.69947 -9.45242 -9.33273 -8.23643 -6.38252 0.29409 0.39210 1.33647 1.35828 1.37077 1.48501 1.85351 2.33039 2.45013 2.79885 3.06033 3.28717 3.70130 3.88657 3.89706 4.05923 4.12660 4.23437 4.28382 4.40541 4.45940 4.55380 4.63507 4.78086 4.81365 4.86553 4.90949 5.02515 5.07706 5.08715 5.22606 5.28797 5.39357 5.52493 5.57333 5.62647 5.73445 5.77327 5.96594 5.98317 6.06072 6.69442 6.79411 6.88310 7.27819 7.50163 8.83713 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004541 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.248217 B = 6165.053984 C = 7524.672191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.131 3.869 4 N -0.599 5.599 5 C 0.265 3.735 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.499 3.501 15 O -0.592 6.592 16 C -0.089 4.089 17 C -0.064 4.064 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.105 4.105 22 C 0.091 3.909 23 O -0.506 6.506 24 C -0.149 4.149 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.021 0.979 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.406 0.594 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -11.197 -17.551 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.330 5.330 5 C 0.144 3.856 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.288 3.712 15 O -0.472 6.472 16 C -0.128 4.128 17 C -0.064 4.064 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.162 4.162 22 C 0.047 3.953 23 O -0.319 6.319 24 C -0.167 4.167 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.264 0.736 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.563 -11.005 -16.303 21.073 hybrid contribution -0.104 1.118 0.307 1.164 sum 7.459 -9.887 -15.996 20.230 Atomic orbital electron populations 1.24045 0.95655 1.02784 0.98531 1.23354 0.96746 0.98368 1.01666 1.20864 0.92727 0.96362 0.89129 1.48220 1.11779 1.59928 1.13045 1.18660 0.93735 0.92611 0.80634 1.21752 1.40402 0.94529 1.01360 0.92888 1.25850 0.94679 1.03712 0.94865 1.70060 1.42965 1.38019 1.05773 0.85393 0.78259 0.79169 0.78146 1.19124 1.19180 1.20924 1.21241 0.81352 0.77670 0.90953 1.90670 1.53988 1.58137 1.44453 1.20765 0.93887 1.04013 0.94156 1.19365 0.94022 0.94144 0.98893 1.21262 0.97710 0.95679 0.99378 1.21204 0.91563 1.00440 0.99491 1.20530 0.98170 0.92528 1.01397 1.20688 0.90282 1.01806 1.03405 1.18364 0.86785 0.88845 1.01298 1.84777 1.52228 1.60994 1.33859 1.21394 0.92572 0.99777 1.02975 0.88543 0.86544 0.86345 0.90696 0.87220 0.96114 0.98830 0.92436 0.85088 0.86104 0.84613 0.83159 0.89325 0.91754 0.90571 0.73563 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 14.32 67.77 0.97 -3.04 16 2 C -0.18 -4.68 9.76 25.64 0.25 -4.43 16 3 C 0.13 4.02 5.66 85.63 0.48 4.50 16 4 N -0.60 -25.61 2.44 -830.49 -2.03 -27.63 16 5 C 0.27 14.65 5.16 85.63 0.44 15.09 16 6 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 14 C 0.50 21.03 7.66 87.66 0.67 21.70 16 15 O -0.59 -31.93 15.61 -3.04 -0.05 -31.97 16 16 C -0.09 -2.49 4.38 29.10 0.13 -2.36 16 17 C -0.06 -1.90 4.37 -19.88 -0.09 -1.99 16 18 C -0.12 -3.28 9.70 22.28 0.22 -3.06 16 19 C -0.11 -2.61 9.70 22.25 0.22 -2.40 16 20 C -0.13 -3.10 5.89 -19.77 -0.12 -3.21 16 21 C -0.11 -1.88 9.79 71.24 0.70 -1.18 16 22 C 0.09 2.55 6.68 22.51 0.15 2.70 16 23 O -0.51 -12.27 12.55 -92.40 -1.16 -13.43 16 24 C -0.15 -4.54 9.64 22.37 0.22 -4.33 16 25 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 26 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.12 2.70 7.85 -2.91 -0.02 2.68 16 28 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 29 H 0.11 2.54 6.43 -2.39 -0.02 2.53 16 30 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 31 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 16 32 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 33 H 0.13 2.73 7.77 -2.38 -0.02 2.72 16 34 H 0.12 2.78 7.34 -2.39 -0.02 2.76 16 35 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 39 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 40 H 0.41 5.22 9.06 -74.06 -0.67 4.55 16 41 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -81.41 353.92 4.37 -77.04 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.35 Total: 17.86 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.94 Total: -12.82 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.74 Total: -84.68 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.21 Total: -45.41 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -81.41 4.37 -77.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.962 kcal (2) G-P(sol) polarization free energy of solvation -81.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds