Wall clock time and date at job start Tue Mar 31 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35158 * 125.48000 * 2 1 4 4 C 1.40320 * 107.20176 * 179.77951 * 3 2 1 5 5 C 1.37939 * 106.53005 * 0.40782 * 4 3 2 6 6 C 1.41615 * 126.10260 * 179.84989 * 5 4 3 7 7 C 1.35632 * 119.99842 * 179.44278 * 6 5 4 8 8 C 1.41545 * 119.99881 * 179.97438 * 7 6 5 9 9 O 1.21784 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00234 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.01284 * 325.69906 * 11 10 8 13 13 C 1.53876 * 110.03485 * 87.08556 * 11 10 8 14 14 C 1.54266 * 106.59388 * 119.28559 * 13 11 10 15 15 C 1.54890 * 104.19936 * 23.61275 * 14 13 11 16 16 H 1.08996 * 110.75356 * 80.55344 * 15 14 13 17 17 C 1.50693 * 110.75576 * 203.73989 * 15 14 13 18 18 H 1.08004 * 120.00090 * 118.54608 * 17 15 14 19 19 C 1.37881 * 120.00504 * 298.54426 * 17 15 14 20 20 N 1.31518 * 119.99278 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00303 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47082 * 120.00121 * 21 19 17 24 24 H 1.48497 * 109.46943 * 240.00285 * 21 19 17 25 25 C 1.54264 * 110.03308 * 204.30752 * 11 10 8 26 26 O 1.34016 * 125.48456 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46853 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46888 * 299.97979 * 1 2 3 29 29 H 1.08999 * 109.47383 * 59.98531 * 1 2 3 30 30 H 1.07996 * 126.39820 * 0.07150 * 3 2 1 31 31 H 1.08001 * 126.73327 * 180.26560 * 4 3 2 32 32 H 1.07991 * 119.99830 * 359.71986 * 6 5 4 33 33 H 1.07995 * 119.99673 * 0.02562 * 7 6 5 34 34 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 35 35 H 1.09004 * 110.03597 * 238.57172 * 13 11 10 36 36 H 1.09001 * 110.03313 * 359.95724 * 13 11 10 37 37 H 1.09008 * 110.48582 * 142.29387 * 14 13 11 38 38 H 1.08996 * 110.48984 * 264.93125 * 14 13 11 39 39 H 0.97008 * 119.99383 * 180.02562 * 20 19 17 40 40 H 1.08996 * 110.48413 * 335.78337 * 25 11 10 41 41 H 1.09005 * 110.48519 * 98.42451 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6238 0.6605 0.0052 5 6 3.5818 -0.7182 -0.0013 6 6 4.7000 -1.5871 -0.0022 7 6 4.5148 -2.9307 0.0025 8 6 5.6324 -3.7993 0.0010 9 8 6.7604 -3.3401 -0.0040 10 7 5.4484 -5.1344 0.0052 11 6 6.6052 -6.0333 0.0042 12 1 7.4172 -5.5957 -0.5765 13 6 7.0708 -6.2948 1.4473 14 6 6.9421 -7.8139 1.6834 15 6 7.0051 -8.4259 0.2619 16 1 8.0368 -8.4983 -0.0821 17 6 6.3383 -9.7770 0.2322 18 1 5.4777 -9.9407 -0.3994 19 6 6.8270 -10.8043 1.0112 20 7 7.8748 -10.6048 1.7807 21 14 6.0009 -12.4793 0.9738 22 1 4.8512 -12.4433 0.0347 23 1 6.9775 -13.5029 0.5225 24 1 5.5169 -12.8230 2.3350 25 6 6.2102 -7.4021 -0.5875 26 8 2.2849 -1.0913 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3634 0.5140 -0.8898 30 1 1.9555 2.1270 0.0011 31 1 4.5086 1.2798 0.0106 32 1 5.7002 -1.1799 -0.0022 33 1 3.5145 -3.3378 0.0065 34 1 4.5500 -5.5001 0.0096 35 1 8.1090 -5.9850 1.5667 36 1 6.4365 -5.7523 2.1484 37 1 7.7703 -8.1769 2.2921 38 1 5.9885 -8.0470 2.1571 39 1 8.2188 -11.3277 2.3285 40 1 5.1383 -7.5688 -0.4810 41 1 6.5047 -7.4641 -1.6352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295488262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:11 Heat of formation + Delta-G solvation = -24.474761 kcal Electronic energy + Delta-G solvation = -21645.578763 eV Core-core repulsion = 18298.672976 eV Total energy + Delta-G solvation = -3346.905787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.86238 -39.75137 -37.15883 -34.44519 -33.63843 -33.56289 -32.03339 -31.38330 -28.20986 -27.82288 -26.46035 -24.04714 -23.01458 -22.16752 -20.77381 -19.90326 -19.34302 -18.96868 -17.42286 -16.66380 -16.56500 -16.34073 -15.46320 -14.98438 -14.69704 -14.50731 -14.04633 -13.96690 -13.57757 -13.46457 -13.27418 -12.86459 -12.61161 -12.42430 -12.28707 -12.15051 -11.74981 -11.13858 -11.02899 -10.93695 -10.74943 -10.54436 -10.30586 -10.07724 -9.93782 -9.66184 -9.50364 -9.20336 -8.79072 -8.60327 -8.36569 -8.05812 -6.00281 -4.03725 0.28048 1.82719 2.48669 2.54135 3.29486 3.37785 3.40886 3.55781 3.61238 4.34992 4.44054 4.56616 4.65595 4.85405 5.00706 5.01590 5.18434 5.31038 5.31938 5.37792 5.50530 5.58429 5.69341 5.80130 5.85734 5.89766 6.07332 6.20748 6.35231 6.38215 6.63136 6.68941 6.77143 6.81105 6.92752 6.95609 7.28786 7.35571 7.73425 7.84158 7.90213 8.03791 8.43279 8.49482 8.98631 9.60442 11.08858 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002557 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.609859 B =10948.562615 C =11603.480180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 C -0.217 4.217 4 C -0.164 4.164 5 C -0.006 4.006 6 C -0.002 4.002 7 C -0.195 4.195 8 C 0.541 3.459 9 O -0.553 6.553 10 N -0.711 5.711 11 C 0.137 3.863 12 H 0.081 0.919 13 C -0.134 4.134 14 C -0.100 4.100 15 C 0.051 3.949 16 H 0.032 0.968 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.121 4.121 26 O -0.164 6.164 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.128 0.872 34 H 0.398 0.602 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 21.693 -2.972 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.236 4.236 4 C -0.184 4.184 5 C -0.055 4.055 6 C -0.022 4.022 7 C -0.216 4.216 8 C 0.331 3.669 9 O -0.435 6.435 10 N -0.360 5.360 11 C 0.033 3.967 12 H 0.099 0.901 13 C -0.173 4.173 14 C -0.138 4.138 15 C 0.032 3.968 16 H 0.050 0.950 17 C -0.552 4.552 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.160 4.160 26 O -0.060 6.060 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.146 0.854 34 H 0.233 0.767 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.270 21.577 -2.852 24.985 hybrid contribution -0.818 -0.956 0.134 1.265 sum -13.087 20.621 -2.718 24.575 Atomic orbital electron populations 1.20387 0.84874 1.04409 1.03780 1.22729 0.94247 0.84081 1.03855 1.21497 0.92721 0.99532 1.09866 1.22330 0.98463 0.93187 1.04392 1.19870 0.81973 0.93562 1.10050 1.20652 0.95424 0.92208 0.93903 1.22212 0.99661 0.94423 1.05317 1.16996 0.89324 0.83052 0.77570 1.90818 1.25216 1.76590 1.50828 1.46304 1.10606 1.05726 1.73399 1.21882 0.87340 0.89878 0.97583 0.90131 1.22652 1.00039 0.99718 0.94894 1.22308 1.01137 0.89713 1.00684 1.19567 0.95153 0.91860 0.90190 0.94966 1.21135 1.13920 0.95143 1.24986 0.92612 1.24986 0.94942 0.98637 0.95411 1.69978 1.23385 1.32323 1.26976 0.86581 0.79492 0.84446 0.77729 1.19842 1.21075 1.21112 1.22774 1.00948 0.93047 0.99188 1.84059 1.16387 1.34770 1.70783 0.90304 0.89380 0.89386 0.83048 0.82612 0.82188 0.85397 0.76713 0.92567 0.93226 0.91218 0.93522 0.93124 0.92075 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.41 36.00 0.37 -0.01 16 2 C 0.00 0.02 7.30 -35.41 -0.26 -0.24 16 3 C -0.22 -1.80 10.76 -39.90 -0.43 -2.23 16 4 C -0.16 -1.54 10.90 -38.91 -0.42 -1.96 16 5 C -0.01 -0.06 6.84 -38.40 -0.26 -0.32 16 6 C 0.00 -0.02 9.39 -39.23 -0.37 -0.39 16 7 C -0.20 -2.48 9.41 -39.25 -0.37 -2.85 16 8 C 0.54 8.64 7.55 -15.00 -0.11 8.52 16 9 O -0.55 -10.67 15.77 5.11 0.08 -10.59 16 10 N -0.71 -11.19 4.98 -55.63 -0.28 -11.47 16 11 C 0.14 2.55 3.23 -66.82 -0.22 2.34 16 12 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 13 C -0.13 -2.69 6.59 -25.61 -0.17 -2.85 16 14 C -0.10 -2.33 5.57 -25.07 -0.14 -2.47 16 15 C 0.05 1.25 2.82 -89.74 -0.25 1.00 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.51 -13.85 8.54 -34.44 -0.29 -14.14 16 18 H 0.06 1.48 7.78 -52.48 -0.41 1.07 16 19 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 20 N -0.89 -25.40 12.02 55.43 0.67 -24.73 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.12 -2.43 5.95 -25.03 -0.15 -2.58 16 26 O -0.16 -1.82 10.18 4.68 0.05 -1.77 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.16 1.81 7.46 -52.49 -0.39 1.42 16 33 H 0.13 1.40 7.72 -52.49 -0.41 1.00 16 34 H 0.40 5.30 8.31 -40.82 -0.34 4.96 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 37 H 0.07 1.78 7.37 -51.92 -0.38 1.40 16 38 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -31.64 347.50 -8.50 -40.14 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.06 Total: 3.68 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -3.17 Total: -16.58 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.39 Total: -36.20 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.13 Total: -12.36 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.64 -8.50 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295488262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.664 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds