Wall clock time and date at job start Tue Mar 31 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35158 * 125.48000 * 2 1 4 4 C 1.40320 * 107.20176 * 179.77951 * 3 2 1 5 5 C 1.37939 * 106.53005 * 0.40782 * 4 3 2 6 6 C 1.41615 * 126.10260 * 179.84989 * 5 4 3 7 7 C 1.35632 * 119.99842 * 179.44278 * 6 5 4 8 8 C 1.41545 * 119.99881 * 179.97438 * 7 6 5 9 9 O 1.21784 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00234 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.01284 * 325.69906 * 11 10 8 13 13 C 1.53876 * 110.03485 * 87.08556 * 11 10 8 14 14 C 1.54266 * 106.59388 * 119.28559 * 13 11 10 15 15 C 1.54890 * 104.19936 * 23.61275 * 14 13 11 16 16 H 1.08996 * 110.75356 * 80.55344 * 15 14 13 17 17 C 1.50693 * 110.75576 * 203.73989 * 15 14 13 18 18 H 1.08004 * 120.00090 * 118.54608 * 17 15 14 19 19 C 1.37881 * 120.00504 * 298.54426 * 17 15 14 20 20 N 1.31518 * 119.99278 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00303 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47082 * 120.00121 * 21 19 17 24 24 H 1.48497 * 109.46943 * 240.00285 * 21 19 17 25 25 C 1.54264 * 110.03308 * 204.30752 * 11 10 8 26 26 O 1.34016 * 125.48456 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46853 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46888 * 299.97979 * 1 2 3 29 29 H 1.08999 * 109.47383 * 59.98531 * 1 2 3 30 30 H 1.07996 * 126.39820 * 0.07150 * 3 2 1 31 31 H 1.08001 * 126.73327 * 180.26560 * 4 3 2 32 32 H 1.07991 * 119.99830 * 359.71986 * 6 5 4 33 33 H 1.07995 * 119.99673 * 0.02562 * 7 6 5 34 34 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 35 35 H 1.09004 * 110.03597 * 238.57172 * 13 11 10 36 36 H 1.09001 * 110.03313 * 359.95724 * 13 11 10 37 37 H 1.09008 * 110.48582 * 142.29387 * 14 13 11 38 38 H 1.08996 * 110.48984 * 264.93125 * 14 13 11 39 39 H 0.97008 * 119.99383 * 180.02562 * 20 19 17 40 40 H 1.08996 * 110.48413 * 335.78337 * 25 11 10 41 41 H 1.09005 * 110.48519 * 98.42451 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6238 0.6605 0.0052 5 6 3.5818 -0.7182 -0.0013 6 6 4.7000 -1.5871 -0.0022 7 6 4.5148 -2.9307 0.0025 8 6 5.6324 -3.7993 0.0010 9 8 6.7604 -3.3401 -0.0040 10 7 5.4484 -5.1344 0.0052 11 6 6.6052 -6.0333 0.0042 12 1 7.4172 -5.5957 -0.5765 13 6 7.0708 -6.2948 1.4473 14 6 6.9421 -7.8139 1.6834 15 6 7.0051 -8.4259 0.2619 16 1 8.0368 -8.4983 -0.0821 17 6 6.3383 -9.7770 0.2322 18 1 5.4777 -9.9407 -0.3994 19 6 6.8270 -10.8043 1.0112 20 7 7.8748 -10.6048 1.7807 21 14 6.0009 -12.4793 0.9738 22 1 4.8512 -12.4433 0.0347 23 1 6.9775 -13.5029 0.5225 24 1 5.5169 -12.8230 2.3350 25 6 6.2102 -7.4021 -0.5875 26 8 2.2849 -1.0913 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3634 0.5140 -0.8898 30 1 1.9555 2.1270 0.0011 31 1 4.5086 1.2798 0.0106 32 1 5.7002 -1.1799 -0.0022 33 1 3.5145 -3.3378 0.0065 34 1 4.5500 -5.5001 0.0096 35 1 8.1090 -5.9850 1.5667 36 1 6.4365 -5.7523 2.1484 37 1 7.7703 -8.1769 2.2921 38 1 5.9885 -8.0470 2.1571 39 1 8.2188 -11.3277 2.3285 40 1 5.1383 -7.5688 -0.4810 41 1 6.5047 -7.4641 -1.6352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295488262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:11 Heat of formation + Delta-G solvation = -42.710891 kcal Electronic energy + Delta-G solvation = -21646.369541 eV Core-core repulsion = 18298.672976 eV Total energy + Delta-G solvation = -3347.696565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.57556 -41.07083 -38.79207 -35.43809 -35.21175 -34.25208 -33.80842 -32.11088 -30.00578 -29.16746 -27.62011 -25.82845 -24.08222 -22.87449 -21.80818 -21.34099 -20.86247 -20.34484 -18.58758 -18.37055 -17.39002 -17.29021 -16.92383 -16.60473 -16.17393 -15.62304 -15.49236 -15.32457 -14.48293 -14.12809 -14.02293 -13.89890 -13.81371 -13.68895 -13.52114 -13.25427 -13.03440 -12.82242 -12.72300 -12.61200 -12.37218 -12.12205 -11.69703 -11.63835 -11.39225 -11.12229 -10.96394 -10.80643 -10.77021 -10.46622 -10.00929 -8.84603 -8.09862 -6.20297 -0.60348 1.08774 1.41931 1.43958 1.55013 1.68229 1.87621 2.34387 2.43853 2.46721 3.20932 3.67076 3.84187 3.93504 3.96334 4.03163 4.10525 4.19966 4.28478 4.49856 4.67671 4.69090 4.73612 4.77049 4.81353 4.87177 4.92425 5.01964 5.06198 5.12856 5.14678 5.15372 5.26364 5.29566 5.40808 5.55732 5.66558 5.68327 5.93308 5.99856 6.09753 6.37448 6.62249 6.90460 7.26841 7.47503 8.98863 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002557 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.609859 B =10948.562615 C =11603.480180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.005 3.995 3 C -0.228 4.228 4 C -0.151 4.151 5 C -0.046 4.046 6 C 0.024 3.976 7 C -0.221 4.221 8 C 0.545 3.455 9 O -0.594 6.594 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.089 4.089 15 C 0.040 3.960 16 H 0.001 0.999 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.009 3.991 20 N -0.921 5.921 21 Si 0.955 3.045 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.108 4.108 26 O -0.182 6.182 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.412 0.588 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 23.453 -3.477 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.247 4.247 4 C -0.170 4.170 5 C -0.094 4.094 6 C 0.004 3.996 7 C -0.242 4.242 8 C 0.337 3.663 9 O -0.478 6.478 10 N -0.355 5.355 11 C 0.045 3.955 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.128 4.128 15 C 0.021 3.979 16 H 0.019 0.981 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.560 5.560 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.146 4.146 26 O -0.079 6.079 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.197 0.803 31 H 0.193 0.807 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.969 23.339 -3.368 27.931 hybrid contribution -0.068 -1.307 0.287 1.340 sum -15.037 22.032 -3.081 26.852 Atomic orbital electron populations 1.20615 0.82260 1.05085 1.05600 1.23609 0.95831 0.83715 1.01508 1.21899 0.92099 1.00844 1.09813 1.22767 0.99909 0.92732 1.01561 1.19870 0.82013 0.94162 1.13402 1.20724 0.95903 0.92068 0.90858 1.21976 0.99029 0.94211 1.08977 1.17389 0.89595 0.83034 0.76261 1.90794 1.26916 1.77111 1.52947 1.46098 1.10368 1.05513 1.73562 1.21492 0.88196 0.89734 0.96092 0.91009 1.22528 1.00237 0.97200 0.96319 1.22078 0.99283 0.91945 0.99468 1.19552 0.93968 0.92642 0.91744 0.98132 1.21509 1.13983 0.96362 1.24729 0.92299 1.25800 0.95556 1.02388 0.95183 1.70117 1.24764 1.33356 1.27773 0.85549 0.78663 0.79859 0.77837 1.18757 1.20954 1.20840 1.22582 1.00902 0.92217 0.98853 1.84052 1.16578 1.36005 1.71239 0.90257 0.87480 0.87412 0.80349 0.80706 0.82267 0.83823 0.75102 0.92986 0.92097 0.94244 0.94360 0.93192 0.90794 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 71.23 0.74 0.22 16 2 C 0.01 0.07 7.30 24.97 0.18 0.26 16 3 C -0.23 -3.09 10.76 22.07 0.24 -2.85 16 4 C -0.15 -2.46 10.90 22.71 0.25 -2.22 16 5 C -0.05 -0.96 6.84 23.03 0.16 -0.80 16 6 C 0.02 0.55 9.39 22.50 0.21 0.77 16 7 C -0.22 -5.48 9.41 22.48 0.21 -5.27 16 8 C 0.55 17.20 7.55 85.06 0.64 17.84 16 9 O -0.59 -23.02 15.77 -4.62 -0.07 -23.09 16 10 N -0.71 -21.64 4.98 -448.09 -2.23 -23.87 16 11 C 0.15 5.56 3.23 45.72 0.15 5.71 16 12 H 0.07 2.83 7.58 -2.39 -0.02 2.81 16 13 C -0.12 -5.02 6.59 31.32 0.21 -4.81 16 14 C -0.09 -4.28 5.57 31.67 0.18 -4.11 16 15 C 0.04 1.99 2.82 -10.23 -0.03 1.96 16 16 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 17 C -0.53 -28.69 8.54 25.60 0.22 -28.47 16 18 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 19 C 0.01 0.52 5.33 84.66 0.45 0.97 16 20 N -0.92 -53.99 12.02 21.45 0.26 -53.73 16 21 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C -0.11 -4.26 5.95 31.69 0.19 -4.07 16 26 O -0.18 -3.75 10.18 -6.18 -0.06 -3.82 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 31 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.16 3.55 7.46 -2.92 -0.02 3.53 16 33 H 0.14 3.00 7.72 -2.91 -0.02 2.98 16 34 H 0.41 10.38 8.31 -92.71 -0.77 9.61 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 37 H 0.04 2.09 7.37 -2.38 -0.02 2.08 16 38 H 0.04 1.85 8.04 -2.39 -0.02 1.84 16 39 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 40 H 0.07 2.73 7.63 -2.39 -0.02 2.71 16 41 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -69.26 347.50 4.17 -65.10 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.26 Total: 18.77 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 3.99 Total: -24.87 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -1.97 Total: -77.60 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.14 Total: -26.91 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.26 4.17 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295488262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.385 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds