Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00044 * 2 1 4 4 C 1.39192 * 119.92396 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.64027 * 179.97438 * 4 3 2 6 6 C 1.38921 * 120.03495 * 0.28095 * 5 4 3 7 7 O 1.34923 * 133.34193 * 179.73843 * 6 5 4 8 8 C 1.34426 * 110.88838 * 179.97438 * 7 6 5 9 9 C 1.50700 * 124.92324 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47656 * 194.97766 * 9 8 7 11 11 C 1.53004 * 109.47218 * 74.97579 * 9 8 7 12 12 N 1.46907 * 109.47012 * 314.97673 * 9 8 7 13 13 C 1.46905 * 110.99965 * 204.99757 * 12 9 8 14 14 C 1.50692 * 109.46951 * 180.02562 * 13 12 9 15 15 H 1.08004 * 120.00611 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99882 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00187 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47085 * 59.99896 * 18 16 14 20 20 H 1.48496 * 109.47079 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46937 * 299.99717 * 18 16 14 22 22 C 1.34003 * 110.15190 * 359.48368 * 8 7 6 23 23 C 1.50702 * 126.89995 * 179.97438 * 22 8 7 24 24 C 1.40457 * 119.40954 * 359.49226 * 6 5 4 25 25 C 1.38168 * 119.92178 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47436 * 299.99741 * 1 2 3 28 28 H 1.09005 * 109.46854 * 59.99790 * 1 2 3 29 29 H 1.07999 * 119.67685 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.97971 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46772 * 60.00040 * 11 9 8 32 32 H 1.08996 * 109.46977 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.47190 * 299.99919 * 11 9 8 34 34 H 1.00895 * 111.00047 * 328.95225 * 12 9 8 35 35 H 1.08999 * 109.47092 * 300.00147 * 13 12 9 36 36 H 1.09001 * 109.46457 * 59.99924 * 13 12 9 37 37 H 0.97001 * 120.00385 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46735 * 270.77242 * 23 22 8 39 39 H 1.09000 * 109.47514 * 30.77131 * 23 22 8 40 40 H 1.08998 * 109.47192 * 150.77787 * 23 22 8 41 41 H 1.08002 * 120.22570 * 0.04742 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0011 6 6 3.2830 3.7041 -0.0048 7 8 4.1428 4.7438 -0.0104 8 6 5.4161 4.3128 -0.0142 9 6 6.6295 5.2065 -0.0202 10 1 7.5099 4.6223 -0.2880 11 6 6.8234 5.8126 1.3712 12 7 6.4396 6.2834 -1.0013 13 6 7.7315 6.7983 -1.4746 14 6 7.4969 7.8991 -2.4765 15 1 6.4889 8.1879 -2.7355 16 6 8.5690 8.5378 -3.0626 17 7 9.7964 8.1867 -2.7469 18 14 8.2782 9.9030 -4.3041 19 1 7.5136 11.0019 -3.6614 20 1 9.5841 10.4233 -4.7826 21 1 7.5058 9.3694 -5.4547 22 6 5.4501 2.9733 0.0000 23 6 6.6777 2.0992 0.0006 24 6 4.0513 2.5283 -0.0004 25 6 3.4262 1.2819 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2086 2.3139 0.0005 30 1 1.2970 4.5114 0.0011 31 1 6.9643 5.0136 2.0990 32 1 7.7008 6.4594 1.3667 33 1 5.9431 6.3970 1.6389 34 1 5.8694 5.9727 -1.7735 35 1 8.2977 7.1908 -0.6299 36 1 8.2935 5.9916 -1.9453 37 1 10.5507 8.6358 -3.1595 38 1 6.9744 1.8888 -1.0269 39 1 7.4896 2.6133 0.5151 40 1 6.4572 1.1634 0.5140 41 1 4.0167 0.3777 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298817213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = -35.535720 kcal Electronic energy + Delta-G solvation = -22317.833800 eV Core-core repulsion = 18970.448373 eV Total energy + Delta-G solvation = -3347.385427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.51746 -40.63865 -38.14190 -37.28354 -35.30291 -34.48776 -31.97515 -31.40501 -29.94976 -28.35850 -28.11188 -27.71214 -25.08199 -23.74107 -23.29393 -21.67595 -21.03004 -19.11344 -18.70555 -18.06958 -17.34518 -17.29218 -16.70158 -16.57285 -16.53597 -15.85610 -15.50495 -15.06676 -14.84783 -14.36672 -14.22004 -14.07547 -13.99154 -13.68264 -13.52104 -13.38101 -13.20827 -13.13985 -13.05502 -12.78008 -12.63246 -12.43336 -12.19802 -11.92178 -11.78739 -11.65116 -11.35431 -10.86029 -10.66387 -9.25170 -9.19380 -8.95333 -8.23321 -6.33987 -0.19386 0.34135 1.23871 1.40960 1.44188 1.52254 1.70558 2.29620 2.39653 2.61813 3.10133 3.24503 3.49451 3.61939 3.80713 3.89134 4.06711 4.21560 4.22854 4.31657 4.36276 4.45322 4.45710 4.66200 4.72581 4.75132 4.77294 4.84252 4.89879 4.99990 5.06160 5.09532 5.15821 5.19099 5.24347 5.27893 5.40320 5.49140 5.60434 5.97918 6.14621 6.35812 6.41132 6.60560 6.83366 7.36207 8.87881 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.003168 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.436781 B = 8834.997386 C = 9295.447940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.108 3.892 4 C -0.167 4.167 5 C -0.070 4.070 6 C -0.009 4.009 7 O -0.195 6.195 8 C 0.038 3.962 9 C 0.156 3.844 10 H 0.072 0.928 11 C -0.130 4.130 12 N -0.681 5.681 13 C 0.211 3.789 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.186 4.186 23 C -0.081 4.081 24 C -0.099 4.099 25 C -0.125 4.125 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.333 0.667 35 H 0.012 0.988 36 H -0.033 1.033 37 H 0.266 0.734 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.431 -16.853 7.488 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.063 3.937 4 C -0.185 4.185 5 C -0.088 4.088 6 C -0.055 4.055 7 O -0.097 6.097 8 C -0.011 4.011 9 C 0.046 3.954 10 H 0.090 0.910 11 C -0.188 4.188 12 N -0.313 5.313 13 C 0.083 3.917 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.188 4.188 23 C -0.137 4.137 24 C -0.100 4.100 25 C -0.143 4.143 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.192 0.808 30 H 0.172 0.828 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.030 0.970 36 H -0.015 1.015 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.324 -16.243 7.944 25.041 hybrid contribution 0.436 0.218 -1.211 1.306 sum -16.888 -16.024 6.732 24.235 Atomic orbital electron populations 1.23408 0.76135 1.05802 1.02556 1.86069 1.23669 1.25837 1.88937 1.18755 0.91618 0.85178 0.98147 1.21327 1.01687 0.89770 1.05757 1.20050 0.88192 0.99740 1.00826 1.20071 0.92978 0.85085 1.07410 1.84009 1.14884 1.34271 1.76578 1.22323 0.83371 0.93343 1.02033 1.20301 0.89436 0.89700 0.95942 0.91036 1.21748 1.02209 1.01033 0.93799 1.60716 1.18283 1.34188 1.18080 1.19283 0.85510 0.93142 0.93718 1.21472 0.93204 1.19131 1.23940 0.92161 1.25886 0.94621 0.99853 0.98974 1.70057 0.98827 1.43433 1.44694 0.85418 0.77455 0.78830 0.78794 1.19438 1.20539 1.19300 1.21137 0.94722 0.92729 1.10238 1.20256 0.92150 0.98462 1.02833 1.19629 0.92650 0.93643 1.04121 1.19690 0.92110 0.96293 1.06251 0.86248 0.91283 0.91479 0.80822 0.82753 0.90235 0.92449 0.92518 0.84988 0.97006 1.01536 0.92492 0.91059 0.90701 0.89560 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.19 10.49 -93.24 -0.98 -7.17 16 3 C 0.11 2.37 6.68 22.48 0.15 2.52 16 4 C -0.17 -3.15 9.01 22.39 0.20 -2.95 16 5 C -0.07 -1.64 10.05 22.32 0.22 -1.41 16 6 C -0.01 -0.27 7.41 22.97 0.17 -0.10 16 7 O -0.20 -7.08 10.59 -9.87 -0.10 -7.18 16 8 C 0.04 1.31 5.72 24.72 0.14 1.45 16 9 C 0.16 5.82 2.90 44.17 0.13 5.95 16 10 H 0.07 2.64 6.72 -2.39 -0.02 2.63 16 11 C -0.13 -4.40 9.40 71.98 0.68 -3.72 16 12 N -0.68 -30.92 6.29 -499.44 -3.14 -34.06 16 13 C 0.21 11.35 5.24 85.55 0.45 11.79 16 14 C -0.54 -31.25 9.32 25.60 0.24 -31.01 16 15 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 16 C 0.01 0.31 5.46 84.66 0.46 0.77 16 17 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 18 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C -0.19 -5.73 6.35 -18.59 -0.12 -5.85 16 23 C -0.08 -1.95 9.93 71.24 0.71 -1.25 16 24 C -0.10 -2.97 6.38 -20.21 -0.13 -3.10 16 25 C -0.12 -3.17 10.03 22.54 0.23 -2.94 16 26 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 28 H 0.07 0.48 7.65 -2.38 -0.02 0.46 16 29 H 0.17 1.89 6.26 -2.91 -0.02 1.87 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.06 7.45 -2.39 -0.02 2.04 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.33 15.11 8.34 -89.70 -0.75 14.37 16 35 H 0.01 0.68 7.44 -2.39 -0.02 0.66 16 36 H -0.03 -1.88 8.06 -2.39 -0.02 -1.90 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.73 7.41 -2.39 -0.02 1.71 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.25 345.12 3.02 -66.23 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.29 Total: 19.76 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.64 Total: -28.60 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.86 Total: -89.75 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.08 Total: -14.36 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.25 3.02 -66.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.695 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds