Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38280 * 119.97560 * 2 1 4 4 C 1.38242 * 120.11729 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05236 * 359.76095 * 4 3 2 6 6 C 1.50699 * 120.02910 * 180.25639 * 5 4 3 7 7 C 1.38711 * 119.94149 * 0.53580 * 5 4 3 8 8 O 1.35902 * 120.05336 * 179.72488 * 7 5 4 9 9 C 1.42901 * 116.99806 * 179.72403 * 8 7 5 10 10 C 1.50699 * 109.46994 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00308 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00285 * 180.02562 * 12 10 9 14 14 H 1.08006 * 120.00353 * 224.28423 * 13 12 10 15 15 C 1.38958 * 119.99995 * 44.28801 * 13 12 10 16 16 N 1.31408 * 119.99651 * 18.20602 * 15 13 12 17 17 Si 1.86795 * 119.99851 * 198.20771 * 15 13 12 18 18 H 1.48507 * 109.47227 * 60.00253 * 17 15 13 19 19 H 1.48508 * 109.47021 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47585 * 299.99675 * 17 15 13 21 21 C 1.46505 * 119.99824 * 359.97438 * 12 10 9 22 22 C 1.52996 * 117.49736 * 183.22554 * 21 12 10 23 23 C 1.53001 * 117.49483 * 114.60367 * 21 12 10 24 24 C 1.38131 * 119.96887 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47503 * 269.98219 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.98248 * 1 2 3 27 27 H 1.09004 * 109.47287 * 149.98617 * 1 2 3 28 28 H 1.08003 * 119.94089 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.97466 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47110 * 270.27974 * 6 5 4 31 31 H 1.08998 * 109.47286 * 30.27064 * 6 5 4 32 32 H 1.08997 * 109.47244 * 150.28224 * 6 5 4 33 33 H 1.09001 * 109.47401 * 299.99515 * 9 8 7 34 34 H 1.08999 * 109.47434 * 59.99621 * 9 8 7 35 35 H 0.96999 * 119.99975 * 174.92470 * 16 15 13 36 36 H 1.09000 * 115.54882 * 328.93826 * 21 12 10 37 37 H 1.08995 * 117.50026 * 0.02562 * 22 21 12 38 38 H 1.09004 * 117.50105 * 145.02859 * 22 21 12 39 39 H 1.09002 * 117.50147 * 214.97896 * 23 21 12 40 40 H 1.08999 * 117.50067 * 359.97438 * 23 21 12 41 41 H 1.07998 * 120.02938 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0070 0.0061 6 6 5.7822 0.0114 0.0125 7 6 3.5845 -1.1959 -0.0002 8 8 4.2658 -2.3719 -0.0004 9 6 3.4892 -3.5715 -0.0009 10 6 4.4089 -4.7652 -0.0017 11 8 5.6111 -4.6046 -0.0024 12 7 3.8956 -6.0114 -0.0017 13 6 4.7323 -7.0974 -0.0019 14 1 4.5313 -7.9339 -0.6550 15 6 5.8389 -7.1222 0.8382 16 7 5.9006 -6.3076 1.8675 17 14 7.2385 -8.3132 0.5042 18 1 7.8128 -8.0386 -0.8375 19 1 8.2915 -8.1418 1.5373 20 1 6.7245 -9.7057 0.5471 21 6 2.4435 -6.2055 -0.0004 22 6 1.9229 -7.6421 0.0759 23 6 1.8170 -6.8586 -1.2340 24 6 2.1970 -1.1966 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5141 28 1 1.6565 2.1324 -0.0004 29 1 4.1175 2.1381 0.0010 30 1 6.1499 0.0152 -1.0136 31 1 6.1407 0.9010 0.5301 32 1 6.1459 -0.8790 0.5254 33 1 2.8603 -3.5976 0.8891 34 1 2.8605 -3.5970 -0.8909 35 1 6.6367 -6.3747 2.4956 36 1 1.8664 -5.4330 0.5080 37 1 2.6607 -8.4428 0.1255 38 1 1.0030 -7.8151 0.6346 39 1 0.8275 -6.5161 -1.5370 40 1 2.4851 -7.1435 -2.0467 41 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299198147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -12.793844 kcal Electronic energy + Delta-G solvation = -23025.505511 eV Core-core repulsion = 19679.106246 eV Total energy + Delta-G solvation = -3346.399265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09306 -38.61900 -37.22070 -35.90795 -33.64203 -32.82578 -31.07185 -29.95302 -29.08386 -28.01863 -24.88045 -24.44705 -22.26766 -21.74748 -21.25599 -20.78992 -19.41507 -17.23554 -16.65419 -16.14659 -15.72371 -15.51079 -15.35647 -14.67003 -14.32988 -14.04503 -13.85334 -13.60370 -13.29018 -13.13764 -12.75843 -12.73485 -12.58917 -12.33632 -11.79280 -11.64685 -11.47230 -11.16149 -11.10063 -10.96682 -10.89134 -10.77524 -10.62066 -10.40616 -10.20490 -10.03833 -9.82228 -8.74481 -8.57056 -8.06883 -7.80837 -7.10173 -6.14858 -3.92167 1.42908 1.62091 3.27566 3.36953 3.39231 3.46055 3.85322 4.00687 4.27793 4.68263 4.80533 4.83330 4.91714 5.11836 5.22096 5.24774 5.36974 5.42040 5.50435 5.54482 5.61238 5.66366 5.68051 5.75557 5.76279 5.80337 5.86422 5.97880 6.03083 6.09618 6.16283 6.36633 6.46250 6.49035 6.65195 6.66685 6.72183 6.87380 6.99039 7.57138 7.75429 8.22709 8.97754 9.09685 9.57583 10.19318 10.94145 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.004725 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.099342 B = 5923.884241 C = 7189.959771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.056 4.056 3 C -0.166 4.166 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.106 4.106 7 C 0.142 3.858 8 O -0.280 6.280 9 C 0.049 3.951 10 C 0.484 3.516 11 O -0.510 6.510 12 N -0.423 5.423 13 C -0.350 4.350 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.831 5.831 17 Si 0.916 3.084 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.068 3.932 22 C -0.170 4.170 23 C -0.207 4.207 24 C -0.211 4.211 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 10.299 -2.876 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 C -0.184 4.184 4 C -0.100 4.100 5 C -0.125 4.125 6 C -0.162 4.162 7 C 0.095 3.905 8 O -0.191 6.191 9 C -0.030 4.030 10 C 0.269 3.731 11 O -0.385 6.385 12 N -0.146 5.146 13 C -0.477 4.477 14 H 0.097 0.903 15 C -0.138 4.138 16 N -0.464 5.464 17 Si 0.742 3.258 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.039 4.039 22 C -0.207 4.207 23 C -0.246 4.246 24 C -0.230 4.230 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.505 10.459 -2.729 14.394 hybrid contribution 0.183 -0.659 0.049 0.686 sum -9.322 9.799 -2.680 13.788 Atomic orbital electron populations 1.20784 0.91332 1.02602 1.02251 1.19634 0.95736 0.92560 0.97683 1.20802 0.94046 0.97180 1.06369 1.20799 0.93921 0.96597 0.98687 1.19282 0.96697 0.90274 1.06198 1.20608 0.90492 1.02894 1.02253 1.19024 0.90324 0.86441 0.94680 1.86222 1.34400 1.11307 1.87196 1.22718 0.94762 0.84151 1.01382 1.19277 0.88421 0.82746 0.82617 1.90567 1.14912 1.84057 1.48973 1.42593 1.01260 1.04192 1.66522 1.18799 1.06936 0.98239 1.23679 0.90250 1.25280 0.98827 0.96064 0.93611 1.69810 1.30897 1.35452 1.10246 0.86229 0.81331 0.79672 0.78529 1.19847 1.21110 1.20301 1.21754 0.85636 0.96359 1.00113 1.23057 1.02009 0.96215 0.99431 1.23335 1.01372 1.06783 0.93092 1.21149 0.92996 0.98889 1.09945 0.91186 0.91629 0.91577 0.86386 0.85751 0.91586 0.92164 0.90438 0.91013 0.90883 0.92344 0.88206 0.87325 0.89697 0.89703 0.88944 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 2 C -0.06 -0.72 5.88 -104.65 -0.62 -1.34 16 3 C -0.17 -2.03 9.70 -39.56 -0.38 -2.42 16 4 C -0.08 -1.07 9.70 -39.60 -0.38 -1.46 16 5 C -0.12 -1.97 5.89 -104.47 -0.62 -2.58 16 6 C -0.11 -1.59 9.79 36.01 0.35 -1.24 16 7 C 0.14 2.52 6.66 -39.22 -0.26 2.26 16 8 O -0.28 -5.94 8.71 -39.34 -0.34 -6.29 16 9 C 0.05 0.99 3.84 36.01 0.14 1.13 16 10 C 0.48 12.54 7.04 -10.99 -0.08 12.46 16 11 O -0.51 -15.53 14.26 -14.36 -0.20 -15.74 16 12 N -0.42 -10.51 2.83 -107.73 -0.31 -10.81 16 13 C -0.35 -9.47 7.92 -14.93 -0.12 -9.59 16 14 H 0.08 2.06 7.26 -52.48 -0.38 1.68 16 15 C 0.07 2.06 4.39 -17.47 -0.08 1.99 16 16 N -0.83 -24.76 11.74 55.50 0.65 -24.11 16 17 Si 0.92 21.91 29.59 -169.99 -5.03 16.88 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 C 0.07 1.31 5.87 -67.93 -0.40 0.91 16 22 C -0.17 -2.95 9.80 -26.73 -0.26 -3.21 16 23 C -0.21 -3.39 10.36 -26.73 -0.28 -3.67 16 24 C -0.21 -3.19 8.69 -39.43 -0.34 -3.54 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 33 H 0.07 1.33 7.08 -51.93 -0.37 0.97 16 34 H 0.07 1.28 7.63 -51.93 -0.40 0.89 16 35 H 0.27 7.62 8.32 -40.82 -0.34 7.28 16 36 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 37 H 0.11 2.10 6.72 -51.93 -0.35 1.75 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.53 342.88 -8.96 -42.48 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.93 Total: 3.42 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.96 Total: -11.01 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.35 Total: -34.93 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.55 Total: -22.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.53 -8.96 -42.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299198147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.691 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds