Wall clock time and date at job start Tue Mar 31 2020 06:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38280 * 119.97560 * 2 1 4 4 C 1.38242 * 120.11729 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05236 * 359.76095 * 4 3 2 6 6 C 1.50699 * 120.02910 * 180.25639 * 5 4 3 7 7 C 1.38711 * 119.94149 * 0.53580 * 5 4 3 8 8 O 1.35902 * 120.05336 * 179.72488 * 7 5 4 9 9 C 1.42901 * 116.99806 * 179.72403 * 8 7 5 10 10 C 1.50699 * 109.46994 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00308 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00285 * 180.02562 * 12 10 9 14 14 H 1.08006 * 120.00353 * 224.28423 * 13 12 10 15 15 C 1.38958 * 119.99995 * 44.28801 * 13 12 10 16 16 N 1.31408 * 119.99651 * 18.20602 * 15 13 12 17 17 Si 1.86795 * 119.99851 * 198.20771 * 15 13 12 18 18 H 1.48507 * 109.47227 * 60.00253 * 17 15 13 19 19 H 1.48508 * 109.47021 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47585 * 299.99675 * 17 15 13 21 21 C 1.46505 * 119.99824 * 359.97438 * 12 10 9 22 22 C 1.52996 * 117.49736 * 183.22554 * 21 12 10 23 23 C 1.53001 * 117.49483 * 114.60367 * 21 12 10 24 24 C 1.38131 * 119.96887 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47503 * 269.98219 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.98248 * 1 2 3 27 27 H 1.09004 * 109.47287 * 149.98617 * 1 2 3 28 28 H 1.08003 * 119.94089 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.97466 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47110 * 270.27974 * 6 5 4 31 31 H 1.08998 * 109.47286 * 30.27064 * 6 5 4 32 32 H 1.08997 * 109.47244 * 150.28224 * 6 5 4 33 33 H 1.09001 * 109.47401 * 299.99515 * 9 8 7 34 34 H 1.08999 * 109.47434 * 59.99621 * 9 8 7 35 35 H 0.96999 * 119.99975 * 174.92470 * 16 15 13 36 36 H 1.09000 * 115.54882 * 328.93826 * 21 12 10 37 37 H 1.08995 * 117.50026 * 0.02562 * 22 21 12 38 38 H 1.09004 * 117.50105 * 145.02859 * 22 21 12 39 39 H 1.09002 * 117.50147 * 214.97896 * 23 21 12 40 40 H 1.08999 * 117.50067 * 359.97438 * 23 21 12 41 41 H 1.07998 * 120.02938 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0070 0.0061 6 6 5.7822 0.0114 0.0125 7 6 3.5845 -1.1959 -0.0002 8 8 4.2658 -2.3719 -0.0004 9 6 3.4892 -3.5715 -0.0009 10 6 4.4089 -4.7652 -0.0017 11 8 5.6111 -4.6046 -0.0024 12 7 3.8956 -6.0114 -0.0017 13 6 4.7323 -7.0974 -0.0019 14 1 4.5313 -7.9339 -0.6550 15 6 5.8389 -7.1222 0.8382 16 7 5.9006 -6.3076 1.8675 17 14 7.2385 -8.3132 0.5042 18 1 7.8128 -8.0386 -0.8375 19 1 8.2915 -8.1418 1.5373 20 1 6.7245 -9.7057 0.5471 21 6 2.4435 -6.2055 -0.0004 22 6 1.9229 -7.6421 0.0759 23 6 1.8170 -6.8586 -1.2340 24 6 2.1970 -1.1966 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5141 28 1 1.6565 2.1324 -0.0004 29 1 4.1175 2.1381 0.0010 30 1 6.1499 0.0152 -1.0136 31 1 6.1407 0.9010 0.5301 32 1 6.1459 -0.8790 0.5254 33 1 2.8603 -3.5976 0.8891 34 1 2.8605 -3.5970 -0.8909 35 1 6.6367 -6.3747 2.4956 36 1 1.8664 -5.4330 0.5080 37 1 2.6607 -8.4428 0.1255 38 1 1.0030 -7.8151 0.6346 39 1 0.8275 -6.5161 -1.5370 40 1 2.4851 -7.1435 -2.0467 41 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299198147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:44 Heat of formation + Delta-G solvation = -31.858232 kcal Electronic energy + Delta-G solvation = -23026.332205 eV Core-core repulsion = 19679.106246 eV Total energy + Delta-G solvation = -3347.225959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39039 -40.30504 -38.55885 -37.60960 -34.85421 -34.64455 -32.99517 -31.12343 -30.06581 -29.67503 -26.66456 -25.59048 -23.58628 -23.08528 -22.81779 -21.93125 -21.21340 -18.64924 -18.32705 -17.91861 -17.23812 -16.84689 -16.61172 -16.41118 -15.89911 -15.51848 -15.14127 -14.94830 -14.74239 -14.36800 -14.09862 -14.00165 -13.77738 -13.56428 -13.39481 -13.01131 -12.87195 -12.79997 -12.64441 -12.54676 -12.23326 -12.18264 -12.13776 -11.77046 -11.75069 -11.70262 -11.26430 -10.76040 -10.04215 -9.63258 -9.05631 -8.98521 -8.25053 -6.04886 0.37099 0.51266 1.33762 1.43981 1.47072 1.95048 2.16430 2.38562 2.78602 3.08803 3.16401 3.29850 3.74262 3.86972 3.93945 4.01933 4.12229 4.15413 4.20169 4.25791 4.31225 4.38158 4.45550 4.65208 4.75441 4.76079 4.81374 4.88421 4.89477 4.91337 5.01020 5.17947 5.25394 5.38430 5.42949 5.43602 5.48432 5.56001 5.67693 5.94320 6.14286 6.47835 6.95128 7.13400 7.58082 8.23652 8.83706 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.004725 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.099342 B = 5923.884241 C = 7189.959771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.078 4.078 5 C -0.148 4.148 6 C -0.101 4.101 7 C 0.102 3.898 8 O -0.318 6.318 9 C 0.068 3.932 10 C 0.463 3.537 11 O -0.574 6.574 12 N -0.435 5.435 13 C -0.357 4.357 14 H 0.085 0.915 15 C 0.020 3.980 16 N -0.872 5.872 17 Si 0.973 3.027 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.251 1.251 21 C 0.033 3.967 22 C -0.165 4.165 23 C -0.177 4.177 24 C -0.219 4.219 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.866 11.621 -3.598 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.058 4.058 3 C -0.177 4.177 4 C -0.096 4.096 5 C -0.149 4.149 6 C -0.158 4.158 7 C 0.057 3.943 8 O -0.231 6.231 9 C -0.010 4.010 10 C 0.251 3.749 11 O -0.454 6.454 12 N -0.156 5.156 13 C -0.484 4.484 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.507 5.507 17 Si 0.797 3.203 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.175 1.175 21 C -0.072 4.072 22 C -0.203 4.203 23 C -0.216 4.216 24 C -0.238 4.238 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.900 11.749 -3.465 17.790 hybrid contribution 1.086 -0.978 0.211 1.477 sum -11.814 10.771 -3.255 16.315 Atomic orbital electron populations 1.20859 0.88607 1.03982 1.03332 1.20099 0.97722 0.91889 0.96072 1.21289 0.93840 0.98461 1.04062 1.21161 0.94675 0.96500 0.97277 1.19571 0.96909 0.90987 1.07425 1.20548 0.90898 1.02226 1.02123 1.19421 0.91732 0.85579 0.97606 1.86160 1.36001 1.12474 1.88467 1.22412 0.93182 0.82263 1.03172 1.20255 0.88611 0.84524 0.81500 1.90510 1.17719 1.85345 1.51854 1.42825 1.03701 1.03550 1.65571 1.19107 1.07634 0.98713 1.22979 0.89789 1.26139 1.01133 0.97855 0.93519 1.69934 1.31446 1.37817 1.11533 0.85339 0.78400 0.79085 0.77466 1.20764 1.21389 1.17485 1.22125 0.82693 0.98693 1.03684 1.23123 1.02515 0.93962 1.00661 1.23357 1.02466 1.04246 0.91490 1.21336 0.91944 1.00437 1.10058 0.90086 0.89544 0.91012 0.82830 0.82751 0.91539 0.89324 0.94443 0.89587 0.88143 0.93056 0.85608 0.89915 0.86186 0.85365 0.90629 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.95 16 2 C -0.06 -1.31 5.88 -19.88 -0.12 -1.43 16 3 C -0.16 -3.30 9.70 22.28 0.22 -3.08 16 4 C -0.08 -1.85 9.70 22.26 0.22 -1.64 16 5 C -0.15 -4.71 5.89 -19.77 -0.12 -4.82 16 6 C -0.10 -3.18 9.79 71.24 0.70 -2.48 16 7 C 0.10 3.67 6.66 22.51 0.15 3.82 16 8 O -0.32 -14.21 8.71 -73.42 -0.64 -14.85 16 9 C 0.07 2.83 3.84 71.24 0.27 3.10 16 10 C 0.46 25.03 7.04 87.66 0.62 25.64 16 11 O -0.57 -37.25 14.26 15.97 0.23 -37.02 16 12 N -0.43 -22.06 2.83 -613.12 -1.74 -23.80 16 13 C -0.36 -19.87 7.92 84.04 0.67 -19.20 16 14 H 0.08 4.45 7.26 -2.91 -0.02 4.43 16 15 C 0.02 1.16 4.39 84.93 0.37 1.53 16 16 N -0.87 -54.60 11.74 21.67 0.25 -54.35 16 17 Si 0.97 46.48 29.59 68.60 2.03 48.51 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 21 C 0.03 1.22 5.87 44.99 0.26 1.49 16 22 C -0.17 -5.40 9.80 30.59 0.30 -5.10 16 23 C -0.18 -5.31 10.36 30.60 0.32 -4.99 16 24 C -0.22 -6.35 8.69 22.37 0.19 -6.15 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 27 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 32 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 33 H 0.09 3.22 7.08 -2.39 -0.02 3.21 16 34 H 0.10 3.48 7.63 -2.39 -0.02 3.47 16 35 H 0.26 15.76 8.32 -92.71 -0.77 14.98 16 36 H 0.13 4.00 6.96 -2.39 -0.02 3.99 16 37 H 0.08 3.16 6.72 -2.39 -0.02 3.14 16 38 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.14 3.52 6.30 -2.91 -0.02 3.50 16 Total: -1.00 -79.52 342.88 5.92 -73.60 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.02 Total: 22.17 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.76 Total: -14.26 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.48 Total: -78.15 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.41 Total: -51.87 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.52 5.92 -73.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299198147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.739 kcal (2) G-P(sol) polarization free energy of solvation -79.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds