Wall clock time and date at job start Tue Mar 31 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.97127 * 2 1 4 4 C 1.38246 * 120.10998 * 179.73087 * 3 2 1 5 5 C 1.38169 * 120.05338 * 0.54200 * 4 3 2 6 6 C 1.38699 * 119.94639 * 359.73359 * 5 4 3 7 7 O 1.35899 * 120.06033 * 179.97438 * 6 5 4 8 8 C 1.42908 * 116.99693 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.47153 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47057 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99999 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00149 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00057 * 180.02562 * 12 10 9 14 14 H 1.08009 * 119.99776 * 224.48827 * 13 12 10 15 15 C 1.38950 * 120.00351 * 44.48562 * 13 12 10 16 16 N 1.31415 * 119.99264 * 17.99778 * 15 13 12 17 17 Si 1.86794 * 120.00330 * 197.99492 * 15 13 12 18 18 H 1.48499 * 109.47455 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47242 * 120.00473 * 17 15 13 20 20 H 1.48507 * 109.47188 * 240.00118 * 17 15 13 21 21 C 1.46496 * 119.99879 * 0.02562 * 12 10 9 22 22 C 1.53001 * 117.49919 * 183.27029 * 21 12 10 23 23 C 1.53000 * 117.50363 * 114.61041 * 21 12 10 24 24 C 1.38122 * 119.97057 * 180.27522 * 2 1 3 25 25 H 1.09000 * 109.47031 * 269.72506 * 1 2 3 26 26 H 1.08992 * 109.47434 * 29.72494 * 1 2 3 27 27 H 1.09002 * 109.47288 * 149.72629 * 1 2 3 28 28 H 1.07997 * 119.94460 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.97528 * 180.25390 * 4 3 2 30 30 H 1.08001 * 120.02489 * 179.75074 * 5 4 3 31 31 H 1.08995 * 109.46943 * 299.99859 * 8 7 6 32 32 H 1.09000 * 109.46875 * 59.99854 * 8 7 6 33 33 H 1.09000 * 109.47060 * 300.00327 * 9 8 7 34 34 H 1.09000 * 109.47139 * 60.00273 * 9 8 7 35 35 H 0.97006 * 119.99408 * 174.95581 * 16 15 13 36 36 H 1.09004 * 115.54924 * 328.93907 * 21 12 10 37 37 H 1.08995 * 117.50130 * 359.97438 * 22 21 12 38 38 H 1.08996 * 117.50026 * 145.01880 * 22 21 12 39 39 H 1.08992 * 117.50121 * 214.98184 * 23 21 12 40 40 H 1.09003 * 117.49367 * 359.97438 * 23 21 12 41 41 H 1.07998 * 120.03141 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0056 5 6 4.2752 0.0071 -0.0001 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3717 -0.0120 8 6 5.6928 -2.2949 -0.0115 9 6 6.2796 -3.7078 -0.0182 10 6 7.7844 -3.6268 -0.0171 11 8 8.3335 -2.5453 -0.0111 12 7 8.5201 -4.7560 -0.0219 13 6 9.8891 -4.6822 -0.0203 14 1 10.4648 -5.3164 -0.6783 15 6 10.5360 -3.7916 0.8277 16 7 9.8977 -3.2844 1.8584 17 14 12.3127 -3.3154 0.5026 18 1 12.7997 -4.0188 -0.7111 19 1 12.4014 -1.8480 0.2929 20 1 13.1494 -3.7003 1.6676 21 6 7.8569 -6.0622 -0.0286 22 6 8.7452 -7.3059 0.0437 23 6 8.0421 -6.9422 -1.2665 24 6 2.1970 -1.1965 -0.0057 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3634 0.8924 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0103 0.0003 31 1 6.0279 -1.7576 -0.8987 32 1 6.0279 -1.7669 0.8812 33 1 5.9443 -4.2447 0.8692 34 1 5.9445 -4.2362 -0.9108 35 1 10.3694 -2.7208 2.4914 36 1 6.8925 -6.1025 0.4778 37 1 9.8230 -7.1522 0.0958 38 1 8.3651 -8.1644 0.5972 39 1 7.1997 -7.5616 -1.5742 40 1 8.6570 -6.5490 -2.0760 41 1 1.6571 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299286320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:03 Heat of formation + Delta-G solvation = -17.177705 kcal Electronic energy + Delta-G solvation = -22394.296324 eV Core-core repulsion = 19047.706961 eV Total energy + Delta-G solvation = -3346.589363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.01191 -38.67040 -37.50236 -36.10686 -32.98027 -32.51292 -31.62658 -30.79114 -29.44461 -27.01808 -25.49155 -23.37787 -22.45323 -21.72054 -21.20229 -20.71339 -19.08262 -17.76145 -16.34793 -16.08863 -15.89684 -15.77489 -15.71199 -14.72760 -14.37512 -14.14847 -13.96252 -13.77780 -13.44041 -13.19185 -13.10946 -12.77439 -12.26456 -12.19149 -11.93500 -11.51118 -11.45159 -11.25888 -11.09666 -10.93172 -10.88606 -10.61779 -10.53193 -10.29643 -10.16768 -9.99033 -9.75526 -8.75710 -8.75498 -8.10590 -8.05592 -7.07571 -6.14898 -3.90863 1.36196 1.52615 3.26427 3.34537 3.38264 3.39391 3.81043 4.06106 4.25972 4.74305 4.78428 4.84068 4.90050 5.10995 5.22130 5.25608 5.38133 5.40156 5.46304 5.50040 5.53191 5.59119 5.64700 5.71240 5.75582 5.80817 5.90936 6.07570 6.13066 6.21642 6.25896 6.36380 6.43594 6.45947 6.52901 6.59677 6.73724 6.87817 6.91615 7.59027 7.63691 8.23321 9.01483 9.09512 9.61299 10.22181 10.94323 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003619 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.177959 B = 7735.841353 C = 8837.569678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.213 4.213 6 C 0.144 3.856 7 O -0.320 6.320 8 C 0.080 3.920 9 C -0.131 4.131 10 C 0.488 3.512 11 O -0.537 6.537 12 N -0.425 5.425 13 C -0.348 4.348 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.834 5.834 17 Si 0.913 3.087 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.285 1.285 21 C 0.073 3.927 22 C -0.173 4.173 23 C -0.207 4.207 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 2.089 -2.928 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.186 4.186 4 C -0.094 4.094 5 C -0.232 4.232 6 C 0.098 3.902 7 O -0.234 6.234 8 C 0.005 3.995 9 C -0.172 4.172 10 C 0.275 3.725 11 O -0.415 6.415 12 N -0.146 5.146 13 C -0.475 4.475 14 H 0.096 0.904 15 C -0.137 4.137 16 N -0.467 5.467 17 Si 0.740 3.260 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.211 1.211 21 C -0.033 4.033 22 C -0.211 4.211 23 C -0.246 4.246 24 C -0.179 4.179 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.262 2.638 -2.790 14.770 hybrid contribution 1.095 0.249 0.066 1.125 sum -13.167 2.888 -2.724 13.752 Atomic orbital electron populations 1.20778 0.91016 1.02727 1.02356 1.19648 0.95809 0.92371 0.97599 1.20869 0.94140 0.97320 1.06254 1.20936 0.94086 0.97459 0.96961 1.21440 1.01058 0.92255 1.08406 1.19024 0.91659 0.85045 0.94463 1.85985 1.21504 1.27966 1.87936 1.22534 0.75548 0.98682 1.02713 1.21484 0.96087 0.95887 1.03724 1.19453 0.86439 0.85035 0.81571 1.90537 1.72732 1.27306 1.50917 1.42718 1.05238 1.00780 1.65891 1.18894 0.79930 1.25750 1.22926 0.90385 1.25260 0.98687 0.96130 0.93672 1.69835 1.36705 1.29969 1.10179 0.86140 0.82868 0.78881 0.78102 1.19555 1.20640 1.21147 1.21733 0.97175 0.84581 0.99833 1.23073 1.00697 0.97693 0.99612 1.23322 1.03248 1.05018 0.93006 1.20271 0.90965 0.98468 1.08173 0.91085 0.91514 0.91463 0.86299 0.85932 0.84909 0.91432 0.91084 0.89718 0.89708 0.92612 0.87868 0.87482 0.89755 0.89726 0.89102 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.05 -0.64 5.88 -104.65 -0.62 -1.25 16 3 C -0.17 -1.95 9.70 -39.56 -0.38 -2.33 16 4 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 5 C -0.21 -3.22 9.04 -39.44 -0.36 -3.58 16 6 C 0.14 2.28 6.69 -39.22 -0.26 2.02 16 7 O -0.32 -5.51 10.14 -19.42 -0.20 -5.71 16 8 C 0.08 1.49 4.03 37.16 0.15 1.64 16 9 C -0.13 -2.54 4.69 -27.89 -0.13 -2.67 16 10 C 0.49 12.16 6.96 -10.99 -0.08 12.08 16 11 O -0.54 -15.41 13.75 5.55 0.08 -15.33 16 12 N -0.43 -10.54 2.83 -107.73 -0.31 -10.84 16 13 C -0.35 -9.41 7.91 -14.93 -0.12 -9.52 16 14 H 0.08 2.05 7.27 -52.48 -0.38 1.67 16 15 C 0.07 2.04 4.39 -17.47 -0.08 1.96 16 16 N -0.83 -24.46 11.74 55.50 0.65 -23.81 16 17 Si 0.91 21.76 29.59 -169.99 -5.03 16.73 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.07 1.44 5.87 -67.93 -0.40 1.04 16 22 C -0.17 -3.09 9.80 -26.69 -0.26 -3.35 16 23 C -0.21 -3.49 10.36 -26.69 -0.28 -3.77 16 24 C -0.16 -2.18 9.64 -39.43 -0.38 -2.56 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 2.08 6.30 -52.49 -0.33 1.75 16 31 H 0.07 1.26 7.62 -51.93 -0.40 0.87 16 32 H 0.07 1.41 7.62 -51.93 -0.40 1.01 16 33 H 0.08 1.56 7.56 -51.93 -0.39 1.17 16 34 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 35 H 0.26 7.40 8.32 -40.82 -0.34 7.07 16 36 H 0.10 1.83 6.96 -51.93 -0.36 1.47 16 37 H 0.11 2.11 6.73 -51.93 -0.35 1.76 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -32.18 343.78 -8.81 -40.99 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.96 Total: 5.04 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.22 Total: -12.24 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.35 Total: -34.65 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.12 Total: -21.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.18 -8.81 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299286320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.816 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds