Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.97127 * 2 1 4 4 C 1.38246 * 120.10998 * 179.73087 * 3 2 1 5 5 C 1.38169 * 120.05338 * 0.54200 * 4 3 2 6 6 C 1.38699 * 119.94639 * 359.73359 * 5 4 3 7 7 O 1.35899 * 120.06033 * 179.97438 * 6 5 4 8 8 C 1.42908 * 116.99693 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.47153 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47057 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99999 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00149 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00057 * 180.02562 * 12 10 9 14 14 H 1.08009 * 119.99776 * 224.48827 * 13 12 10 15 15 C 1.38950 * 120.00351 * 44.48562 * 13 12 10 16 16 N 1.31415 * 119.99264 * 17.99778 * 15 13 12 17 17 Si 1.86794 * 120.00330 * 197.99492 * 15 13 12 18 18 H 1.48499 * 109.47455 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47242 * 120.00473 * 17 15 13 20 20 H 1.48507 * 109.47188 * 240.00118 * 17 15 13 21 21 C 1.46496 * 119.99879 * 0.02562 * 12 10 9 22 22 C 1.53001 * 117.49919 * 183.27029 * 21 12 10 23 23 C 1.53000 * 117.50363 * 114.61041 * 21 12 10 24 24 C 1.38122 * 119.97057 * 180.27522 * 2 1 3 25 25 H 1.09000 * 109.47031 * 269.72506 * 1 2 3 26 26 H 1.08992 * 109.47434 * 29.72494 * 1 2 3 27 27 H 1.09002 * 109.47288 * 149.72629 * 1 2 3 28 28 H 1.07997 * 119.94460 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.97528 * 180.25390 * 4 3 2 30 30 H 1.08001 * 120.02489 * 179.75074 * 5 4 3 31 31 H 1.08995 * 109.46943 * 299.99859 * 8 7 6 32 32 H 1.09000 * 109.46875 * 59.99854 * 8 7 6 33 33 H 1.09000 * 109.47060 * 300.00327 * 9 8 7 34 34 H 1.09000 * 109.47139 * 60.00273 * 9 8 7 35 35 H 0.97006 * 119.99408 * 174.95581 * 16 15 13 36 36 H 1.09004 * 115.54924 * 328.93907 * 21 12 10 37 37 H 1.08995 * 117.50130 * 359.97438 * 22 21 12 38 38 H 1.08996 * 117.50026 * 145.01880 * 22 21 12 39 39 H 1.08992 * 117.50121 * 214.98184 * 23 21 12 40 40 H 1.09003 * 117.49367 * 359.97438 * 23 21 12 41 41 H 1.07998 * 120.03141 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0056 5 6 4.2752 0.0071 -0.0001 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3717 -0.0120 8 6 5.6928 -2.2949 -0.0115 9 6 6.2796 -3.7078 -0.0182 10 6 7.7844 -3.6268 -0.0171 11 8 8.3335 -2.5453 -0.0111 12 7 8.5201 -4.7560 -0.0219 13 6 9.8891 -4.6822 -0.0203 14 1 10.4648 -5.3164 -0.6783 15 6 10.5360 -3.7916 0.8277 16 7 9.8977 -3.2844 1.8584 17 14 12.3127 -3.3154 0.5026 18 1 12.7997 -4.0188 -0.7111 19 1 12.4014 -1.8480 0.2929 20 1 13.1494 -3.7003 1.6676 21 6 7.8569 -6.0622 -0.0286 22 6 8.7452 -7.3059 0.0437 23 6 8.0421 -6.9422 -1.2665 24 6 2.1970 -1.1965 -0.0057 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3634 0.8924 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0103 0.0003 31 1 6.0279 -1.7576 -0.8987 32 1 6.0279 -1.7669 0.8812 33 1 5.9443 -4.2447 0.8692 34 1 5.9445 -4.2362 -0.9108 35 1 10.3694 -2.7208 2.4914 36 1 6.8925 -6.1025 0.4778 37 1 9.8230 -7.1522 0.0958 38 1 8.3651 -8.1644 0.5972 39 1 7.1997 -7.5616 -1.5742 40 1 8.6570 -6.5490 -2.0760 41 1 1.6571 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299286320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -35.204988 kcal Electronic energy + Delta-G solvation = -22395.078046 eV Core-core repulsion = 19047.706961 eV Total energy + Delta-G solvation = -3347.371085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.21159 -40.41203 -38.69207 -37.78075 -34.90357 -33.47881 -33.24699 -32.54224 -30.67540 -27.94390 -27.31663 -24.97015 -23.50128 -23.12778 -22.78970 -21.92230 -20.87611 -19.07621 -18.07103 -17.73905 -17.33396 -17.09944 -16.85882 -16.55337 -15.98664 -15.64169 -15.28430 -15.06137 -14.53661 -14.44556 -14.38647 -14.14773 -13.82525 -13.61487 -13.01773 -12.94068 -12.83216 -12.81383 -12.53264 -12.44904 -12.43313 -12.22377 -12.07128 -11.74208 -11.71574 -11.64884 -11.22296 -10.76387 -10.05174 -9.75423 -9.17516 -9.01263 -8.23137 -6.01897 0.34016 0.47060 1.34198 1.41983 1.49797 1.97899 2.22196 2.37863 2.77860 3.10227 3.15943 3.34476 3.77076 3.89456 3.95033 3.97142 4.07521 4.14255 4.16292 4.28469 4.33356 4.40956 4.43962 4.54114 4.56249 4.75480 4.80717 4.86727 4.89110 4.90574 5.04208 5.06410 5.25694 5.28883 5.38189 5.45787 5.49440 5.49869 5.63304 5.86760 6.17812 6.39099 6.99721 7.13764 7.64907 8.28584 8.85768 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003619 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.177959 B = 7735.841353 C = 8837.569678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 C -0.162 4.162 4 C -0.082 4.082 5 C -0.236 4.236 6 C 0.112 3.888 7 O -0.324 6.324 8 C 0.097 3.903 9 C -0.115 4.115 10 C 0.472 3.528 11 O -0.588 6.588 12 N -0.441 5.441 13 C -0.355 4.355 14 H 0.079 0.921 15 C 0.021 3.979 16 N -0.872 5.872 17 Si 0.971 3.029 18 H -0.257 1.257 19 H -0.295 1.295 20 H -0.272 1.272 21 C 0.040 3.960 22 C -0.170 4.170 23 C -0.178 4.178 24 C -0.167 4.167 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 1.339 -3.657 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.100 4.100 5 C -0.255 4.255 6 C 0.067 3.933 7 O -0.238 6.238 8 C 0.021 3.979 9 C -0.155 4.155 10 C 0.261 3.739 11 O -0.470 6.470 12 N -0.161 5.161 13 C -0.483 4.483 14 H 0.097 0.903 15 C -0.185 4.185 16 N -0.507 5.507 17 Si 0.796 3.204 18 H -0.181 1.181 19 H -0.222 1.222 20 H -0.198 1.198 21 C -0.065 4.065 22 C -0.207 4.207 23 C -0.217 4.217 24 C -0.186 4.186 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.671 1.833 -3.533 17.140 hybrid contribution 1.718 0.491 0.240 1.803 sum -14.954 2.323 -3.293 15.487 Atomic orbital electron populations 1.20863 0.88104 1.04151 1.03552 1.20130 0.97856 0.91579 0.95626 1.21300 0.93618 0.98789 1.04295 1.21230 0.95106 0.97267 0.96432 1.21456 1.00401 0.93428 1.10193 1.19372 0.92655 0.84617 0.96705 1.85928 1.20166 1.29034 1.88688 1.22143 0.76762 0.97839 1.01110 1.21293 0.92127 0.96657 1.05440 1.20323 0.88671 0.84461 0.80460 1.90494 1.74263 1.29181 1.53104 1.42960 1.04917 1.02841 1.65389 1.19137 0.81518 1.25316 1.22283 0.90291 1.26084 1.02565 0.96281 0.93613 1.69945 1.38188 1.31274 1.11310 0.85246 0.78863 0.77483 0.78831 1.18112 1.22194 1.19757 1.22070 0.98367 0.82872 1.03164 1.23131 0.99160 0.97612 1.00825 1.23336 1.03660 1.03227 0.91480 1.20560 0.89968 1.00032 1.08016 0.89814 0.89655 0.90582 0.83049 0.84061 0.86859 0.92482 0.93486 0.88451 0.87102 0.93133 0.85603 0.90011 0.86416 0.85656 0.90684 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.05 -1.09 5.88 -19.88 -0.12 -1.20 16 3 C -0.16 -3.36 9.70 22.28 0.22 -3.15 16 4 C -0.08 -2.06 10.04 22.26 0.22 -1.84 16 5 C -0.24 -7.44 9.04 22.36 0.20 -7.23 16 6 C 0.11 3.59 6.69 22.51 0.15 3.74 16 7 O -0.32 -11.39 10.14 -92.41 -0.94 -12.32 16 8 C 0.10 3.77 4.03 71.98 0.29 4.06 16 9 C -0.11 -4.49 4.69 29.85 0.14 -4.35 16 10 C 0.47 24.21 6.96 87.66 0.61 24.82 16 11 O -0.59 -35.52 13.75 -3.07 -0.04 -35.56 16 12 N -0.44 -22.11 2.83 -613.13 -1.74 -23.85 16 13 C -0.36 -19.57 7.91 84.04 0.66 -18.91 16 14 H 0.08 4.21 7.27 -2.91 -0.02 4.19 16 15 C 0.02 1.18 4.39 84.93 0.37 1.56 16 16 N -0.87 -53.21 11.74 21.66 0.25 -52.96 16 17 Si 0.97 45.88 29.59 68.60 2.03 47.91 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.04 1.53 5.87 44.99 0.26 1.79 16 22 C -0.17 -5.72 9.80 30.62 0.30 -5.42 16 23 C -0.18 -5.54 10.36 30.62 0.32 -5.22 16 24 C -0.17 -4.36 9.64 22.37 0.22 -4.15 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.11 3.91 6.30 -2.91 -0.02 3.89 16 31 H 0.06 2.29 7.62 -2.39 -0.02 2.27 16 32 H 0.05 2.02 7.62 -2.39 -0.02 2.00 16 33 H 0.10 3.54 7.56 -2.39 -0.02 3.52 16 34 H 0.11 3.72 8.11 -2.39 -0.02 3.70 16 35 H 0.26 15.24 8.32 -92.70 -0.77 14.47 16 36 H 0.13 4.18 6.96 -2.38 -0.02 4.16 16 37 H 0.08 3.19 6.73 -2.39 -0.02 3.17 16 38 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -73.44 343.78 5.15 -68.29 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.02 Total: 24.69 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.56 Total: -16.21 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.48 Total: -76.80 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.98 Total: -47.88 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.44 5.15 -68.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299286320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.084 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds