Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38432 * 119.91649 * 2 1 4 4 C 1.38382 * 120.35046 * 180.23542 * 3 2 1 5 5 C 1.37914 * 120.17129 * 359.47896 * 4 3 2 6 6 C 1.50702 * 120.08912 * 180.23395 * 5 4 3 7 7 C 1.39835 * 119.82096 * 0.51636 * 5 4 3 8 8 C 1.47168 * 120.16951 * 179.72003 * 7 5 4 9 9 O 1.21255 * 120.00231 * 353.92462 * 8 7 5 10 10 C 1.50698 * 120.00338 * 173.92434 * 8 7 5 11 11 C 1.52992 * 109.47489 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47432 * 179.97438 * 11 10 8 13 13 O 1.21295 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00513 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99802 * 0.02562 * 14 12 11 16 16 C 1.37098 * 120.00333 * 180.02562 * 14 12 11 17 17 H 1.07994 * 120.00018 * 20.89916 * 16 14 12 18 18 C 1.38955 * 119.99647 * 200.90309 * 16 14 12 19 19 N 1.31413 * 120.00393 * 15.58511 * 18 16 14 20 20 Si 1.86805 * 119.99501 * 195.58169 * 18 16 14 21 21 H 1.48495 * 109.47331 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47073 * 120.00404 * 20 18 16 23 23 H 1.48498 * 109.46969 * 239.99946 * 20 18 16 24 24 C 1.37864 * 119.91449 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47211 * 89.99916 * 1 2 3 26 26 H 1.09000 * 109.47447 * 210.00481 * 1 2 3 27 27 H 1.09008 * 109.46775 * 330.00274 * 1 2 3 28 28 H 1.07993 * 119.82147 * 359.95182 * 3 2 1 29 29 H 1.07997 * 119.91372 * 179.74152 * 4 3 2 30 30 H 1.09001 * 109.46687 * 263.56541 * 6 5 4 31 31 H 1.08997 * 109.46831 * 23.56566 * 6 5 4 32 32 H 1.09001 * 109.47055 * 143.56483 * 6 5 4 33 33 H 1.09007 * 109.46809 * 299.99996 * 10 8 7 34 34 H 1.09001 * 109.47047 * 59.99786 * 10 8 7 35 35 H 1.08998 * 109.47208 * 300.00052 * 11 10 8 36 36 H 1.09001 * 109.47136 * 59.99859 * 11 10 8 37 37 H 1.08996 * 109.47233 * 87.38474 * 15 14 12 38 38 H 1.09000 * 109.47038 * 207.38824 * 15 14 12 39 39 H 1.09000 * 109.46921 * 327.39010 * 15 14 12 40 40 H 0.97001 * 119.99707 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.08618 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1999 0.0000 4 6 3.5811 1.2103 -0.0049 5 6 4.2833 0.0234 0.0010 6 6 5.7903 0.0370 0.0010 7 6 3.5932 -1.1928 0.0010 8 6 4.3348 -2.4640 0.0011 9 8 5.5422 -2.4616 -0.1100 10 6 3.5936 -3.7688 0.1393 11 6 4.5916 -4.9280 0.1091 12 6 3.8505 -6.2328 0.2479 13 8 2.6427 -6.2353 0.3595 14 7 4.5295 -7.3970 0.2471 15 6 5.9882 -7.3940 0.1117 16 6 3.8551 -8.5840 0.3728 17 1 2.8023 -8.6345 0.1375 18 6 4.5263 -9.7221 0.8031 19 7 5.7038 -9.6132 1.3763 20 14 3.7546 -11.4068 0.5668 21 1 2.4352 -11.2581 -0.0981 22 1 4.6436 -12.2443 -0.2779 23 1 3.5715 -12.0572 1.8891 24 6 2.1945 -1.1950 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6531 2.1326 -0.0008 29 1 4.1126 2.1505 -0.0091 30 1 6.1546 -0.0800 -1.0197 31 1 6.1450 0.9842 0.4071 32 1 6.1610 -0.7835 0.6154 33 1 3.0513 -3.7802 1.0848 34 1 2.8886 -3.8753 -0.6852 35 1 5.1335 -4.9164 -0.8365 36 1 5.2969 -4.8218 0.9334 37 1 6.4443 -7.2921 1.0964 38 1 6.3127 -8.3295 -0.3439 39 1 6.2930 -6.5582 -0.5180 40 1 6.1725 -10.4078 1.6763 41 1 1.6545 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299509845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -52.522319 kcal Electronic energy + Delta-G solvation = -22250.382684 eV Core-core repulsion = 18902.260663 eV Total energy + Delta-G solvation = -3348.122021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.37221 -38.68109 -38.06378 -34.73573 -33.91591 -32.62157 -31.65787 -31.03525 -29.36481 -26.67391 -25.77129 -25.01779 -24.10557 -23.13822 -21.00251 -19.37237 -18.57258 -16.91420 -16.62897 -15.96571 -15.69810 -15.57117 -15.51641 -14.60621 -14.38368 -14.23296 -13.86704 -13.77290 -13.70357 -13.26847 -12.98680 -12.72448 -12.49114 -12.28434 -11.92618 -11.79570 -11.68197 -11.58793 -11.42512 -11.33067 -11.19736 -11.11446 -10.80375 -10.65558 -10.31107 -10.17099 -9.30874 -9.09860 -8.98843 -8.64500 -8.35369 -7.65620 -6.30236 -3.82892 0.61978 1.18985 2.44580 3.16419 3.26894 3.33911 3.62251 3.93408 4.01124 4.20721 4.57303 4.61693 4.81103 4.94050 5.00855 5.10002 5.15196 5.25251 5.35068 5.41986 5.49499 5.56130 5.60015 5.63145 5.70205 5.85196 5.86588 5.96368 6.07875 6.12576 6.17461 6.34170 6.36416 6.44869 6.48182 6.51096 6.76896 6.91656 7.25139 7.59735 7.66248 8.16173 8.51612 9.21708 9.47238 10.02642 10.74513 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.003191 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.921001 B = 8772.472812 C = 9681.281728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.033 4.033 6 C -0.122 4.122 7 C -0.165 4.165 8 C 0.393 3.607 9 O -0.449 6.449 10 C -0.143 4.143 11 C -0.119 4.119 12 C 0.444 3.556 13 O -0.596 6.596 14 N -0.446 5.446 15 C 0.111 3.889 16 C -0.307 4.307 17 H 0.100 0.900 18 C 0.029 3.971 19 N -0.880 5.880 20 Si 0.924 3.076 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 19.846 -3.017 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.107 4.107 4 C -0.154 4.154 5 C -0.033 4.033 6 C -0.178 4.178 7 C -0.166 4.166 8 C 0.272 3.728 9 O -0.326 6.326 10 C -0.181 4.181 11 C -0.159 4.159 12 C 0.232 3.768 13 O -0.482 6.482 14 N -0.164 5.164 15 C -0.033 4.033 16 C -0.435 4.435 17 H 0.118 0.882 18 C -0.174 4.174 19 N -0.520 5.520 20 Si 0.751 3.249 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.084 4.084 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.804 19.673 -2.943 20.089 hybrid contribution -0.200 -0.835 0.012 0.859 sum -3.003 18.838 -2.931 19.300 Atomic orbital electron populations 1.20792 0.90749 1.03030 1.02492 1.19883 0.96429 0.92925 1.01622 1.21242 0.94158 0.97613 0.97712 1.21015 0.94092 0.97546 1.02729 1.20242 0.96724 0.91932 0.94398 1.21086 0.90301 1.02928 1.03506 1.20457 0.94333 0.94602 1.07212 1.22679 0.88744 0.90142 0.71211 1.90453 1.16323 1.89472 1.36303 1.21710 0.99578 0.91318 1.05486 1.21307 0.98187 0.92822 1.03610 1.20029 0.88071 0.84813 0.83871 1.90491 1.14361 1.87167 1.56186 1.43616 1.06181 1.05005 1.61641 1.21501 0.81399 1.00142 1.00286 1.19722 0.96211 0.84653 1.42937 0.88249 1.25321 0.96392 1.00168 0.95534 1.70043 1.14820 1.29881 1.37213 0.85899 0.79287 0.81667 0.78058 1.19226 1.20669 1.20804 1.21466 0.92869 0.98528 0.95581 0.91105 0.91102 0.91594 0.85844 0.85655 0.90658 0.92434 0.88903 0.87851 0.87924 0.90099 0.89894 0.92955 0.90784 0.95300 0.92335 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.11 -1.09 5.87 -104.69 -0.61 -1.70 16 3 C -0.09 -0.82 9.69 -39.46 -0.38 -1.21 16 4 C -0.14 -1.35 9.66 -39.65 -0.38 -1.73 16 5 C -0.03 -0.39 5.92 -104.14 -0.62 -1.01 16 6 C -0.12 -1.38 8.73 36.01 0.31 -1.07 16 7 C -0.17 -2.16 5.87 -105.06 -0.62 -2.78 16 8 C 0.39 5.86 7.05 -30.69 -0.22 5.64 16 9 O -0.45 -7.41 12.98 5.58 0.07 -7.33 16 10 C -0.14 -2.31 3.69 -27.89 -0.10 -2.41 16 11 C -0.12 -2.26 3.58 -27.89 -0.10 -2.36 16 12 C 0.44 10.89 7.63 -10.99 -0.08 10.80 16 13 O -0.60 -16.21 15.66 5.54 0.09 -16.12 16 14 N -0.45 -11.71 3.02 -122.19 -0.37 -12.07 16 15 C 0.11 2.56 8.48 59.85 0.51 3.06 16 16 C -0.31 -8.72 9.30 -14.93 -0.14 -8.85 16 17 H 0.10 2.94 7.40 -52.49 -0.39 2.55 16 18 C 0.03 0.78 5.00 -17.46 -0.09 0.69 16 19 N -0.88 -23.88 10.78 55.50 0.60 -23.28 16 20 Si 0.92 20.93 29.58 -169.99 -5.03 15.91 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.07 -0.77 9.12 -39.11 -0.36 -1.13 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.09 1.22 5.87 -51.93 -0.30 0.91 16 33 H 0.10 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.10 1.60 7.86 -51.93 -0.41 1.19 16 35 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16 36 H 0.08 1.56 8.06 -51.93 -0.42 1.14 16 37 H 0.05 1.24 7.81 -51.93 -0.41 0.84 16 38 H 0.07 1.79 6.74 -51.93 -0.35 1.44 16 39 H 0.03 0.56 6.55 -51.93 -0.34 0.22 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.14 1.49 6.99 -52.49 -0.37 1.12 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -32.02 340.58 -7.89 -39.91 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.87 Total: 2.43 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.52 Total: -4.57 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.23 Total: -35.36 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.16 Total: -23.46 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.02 -7.89 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299509845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds