Wall clock time and date at job start Tue Mar 31 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38432 * 119.91649 * 2 1 4 4 C 1.38382 * 120.35046 * 180.23542 * 3 2 1 5 5 C 1.37914 * 120.17129 * 359.47896 * 4 3 2 6 6 C 1.50702 * 120.08912 * 180.23395 * 5 4 3 7 7 C 1.39835 * 119.82096 * 0.51636 * 5 4 3 8 8 C 1.47168 * 120.16951 * 179.72003 * 7 5 4 9 9 O 1.21255 * 120.00231 * 353.92462 * 8 7 5 10 10 C 1.50698 * 120.00338 * 173.92434 * 8 7 5 11 11 C 1.52992 * 109.47489 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47432 * 179.97438 * 11 10 8 13 13 O 1.21295 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00513 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99802 * 0.02562 * 14 12 11 16 16 C 1.37098 * 120.00333 * 180.02562 * 14 12 11 17 17 H 1.07994 * 120.00018 * 20.89916 * 16 14 12 18 18 C 1.38955 * 119.99647 * 200.90309 * 16 14 12 19 19 N 1.31413 * 120.00393 * 15.58511 * 18 16 14 20 20 Si 1.86805 * 119.99501 * 195.58169 * 18 16 14 21 21 H 1.48495 * 109.47331 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47073 * 120.00404 * 20 18 16 23 23 H 1.48498 * 109.46969 * 239.99946 * 20 18 16 24 24 C 1.37864 * 119.91449 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47211 * 89.99916 * 1 2 3 26 26 H 1.09000 * 109.47447 * 210.00481 * 1 2 3 27 27 H 1.09008 * 109.46775 * 330.00274 * 1 2 3 28 28 H 1.07993 * 119.82147 * 359.95182 * 3 2 1 29 29 H 1.07997 * 119.91372 * 179.74152 * 4 3 2 30 30 H 1.09001 * 109.46687 * 263.56541 * 6 5 4 31 31 H 1.08997 * 109.46831 * 23.56566 * 6 5 4 32 32 H 1.09001 * 109.47055 * 143.56483 * 6 5 4 33 33 H 1.09007 * 109.46809 * 299.99996 * 10 8 7 34 34 H 1.09001 * 109.47047 * 59.99786 * 10 8 7 35 35 H 1.08998 * 109.47208 * 300.00052 * 11 10 8 36 36 H 1.09001 * 109.47136 * 59.99859 * 11 10 8 37 37 H 1.08996 * 109.47233 * 87.38474 * 15 14 12 38 38 H 1.09000 * 109.47038 * 207.38824 * 15 14 12 39 39 H 1.09000 * 109.46921 * 327.39010 * 15 14 12 40 40 H 0.97001 * 119.99707 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.08618 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1999 0.0000 4 6 3.5811 1.2103 -0.0049 5 6 4.2833 0.0234 0.0010 6 6 5.7903 0.0370 0.0010 7 6 3.5932 -1.1928 0.0010 8 6 4.3348 -2.4640 0.0011 9 8 5.5422 -2.4616 -0.1100 10 6 3.5936 -3.7688 0.1393 11 6 4.5916 -4.9280 0.1091 12 6 3.8505 -6.2328 0.2479 13 8 2.6427 -6.2353 0.3595 14 7 4.5295 -7.3970 0.2471 15 6 5.9882 -7.3940 0.1117 16 6 3.8551 -8.5840 0.3728 17 1 2.8023 -8.6345 0.1375 18 6 4.5263 -9.7221 0.8031 19 7 5.7038 -9.6132 1.3763 20 14 3.7546 -11.4068 0.5668 21 1 2.4352 -11.2581 -0.0981 22 1 4.6436 -12.2443 -0.2779 23 1 3.5715 -12.0572 1.8891 24 6 2.1945 -1.1950 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6531 2.1326 -0.0008 29 1 4.1126 2.1505 -0.0091 30 1 6.1546 -0.0800 -1.0197 31 1 6.1450 0.9842 0.4071 32 1 6.1610 -0.7835 0.6154 33 1 3.0513 -3.7802 1.0848 34 1 2.8886 -3.8753 -0.6852 35 1 5.1335 -4.9164 -0.8365 36 1 5.2969 -4.8218 0.9334 37 1 6.4443 -7.2921 1.0964 38 1 6.3127 -8.3295 -0.3439 39 1 6.2930 -6.5582 -0.5180 40 1 6.1725 -10.4078 1.6763 41 1 1.6545 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299509845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:43 Heat of formation + Delta-G solvation = -69.695983 kcal Electronic energy + Delta-G solvation = -22251.127390 eV Core-core repulsion = 18902.260663 eV Total energy + Delta-G solvation = -3348.866727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.42248 -40.34389 -39.30887 -36.74150 -34.76451 -34.05100 -33.52543 -32.17129 -30.14389 -28.48314 -27.34621 -26.14693 -25.49447 -24.28907 -21.99662 -20.55783 -20.27638 -18.91008 -18.13955 -17.23772 -16.99772 -16.76225 -16.50924 -16.29772 -15.93037 -15.78877 -15.09491 -14.91624 -14.78718 -14.25666 -14.16877 -13.89627 -13.74456 -13.42345 -13.37064 -13.22460 -13.14343 -12.89915 -12.76640 -12.60900 -12.51354 -12.45448 -12.31129 -12.11558 -12.05055 -11.96200 -11.02258 -10.44468 -10.36614 -9.93847 -9.71627 -9.45085 -8.35914 -5.97937 -0.30981 0.38521 1.35473 1.40826 1.41337 1.55359 2.00356 2.26889 2.76404 2.81490 3.07350 3.27114 3.72615 3.84692 3.90973 4.07264 4.10511 4.14357 4.26988 4.30025 4.50081 4.60082 4.66281 4.75195 4.77608 4.80032 4.86021 4.87816 4.88561 5.00746 5.02454 5.05694 5.18001 5.31480 5.32856 5.36958 5.44593 5.58808 5.62336 5.99082 6.07516 6.45735 6.51691 7.14691 7.45882 8.01294 8.67635 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.003191 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.921001 B = 8772.472812 C = 9681.281728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.082 4.082 4 C -0.135 4.135 5 C -0.048 4.048 6 C -0.119 4.119 7 C -0.188 4.188 8 C 0.401 3.599 9 O -0.471 6.471 10 C -0.138 4.138 11 C -0.106 4.106 12 C 0.436 3.564 13 O -0.629 6.629 14 N -0.464 5.464 15 C 0.121 3.879 16 C -0.348 4.348 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.896 5.896 20 Si 0.991 3.009 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.275 1.275 24 C -0.079 4.079 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.274 0.726 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 21.594 -3.306 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.100 4.100 4 C -0.153 4.153 5 C -0.048 4.048 6 C -0.175 4.175 7 C -0.188 4.188 8 C 0.281 3.719 9 O -0.348 6.348 10 C -0.175 4.175 11 C -0.146 4.146 12 C 0.226 3.774 13 O -0.517 6.517 14 N -0.183 5.183 15 C -0.022 4.022 16 C -0.476 4.476 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.535 5.535 20 Si 0.814 3.186 21 H -0.196 1.196 22 H -0.190 1.190 23 H -0.201 1.201 24 C -0.097 4.097 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.139 21.432 -3.230 21.900 hybrid contribution -0.129 -1.302 0.128 1.315 sum -3.268 20.130 -3.102 20.628 Atomic orbital electron populations 1.20845 0.89043 1.03835 1.03279 1.20214 0.97763 0.92627 1.00676 1.21661 0.94109 0.98566 0.95623 1.21342 0.94617 0.97737 1.01558 1.20435 0.97080 0.92339 0.94932 1.21027 0.90197 1.03299 1.02956 1.20337 0.94890 0.93990 1.09626 1.22596 0.88387 0.90350 0.70519 1.90451 1.16984 1.89711 1.37701 1.21646 0.99048 0.91241 1.05588 1.21208 0.98345 0.90705 1.04335 1.20930 0.88001 0.86099 0.82407 1.90452 1.16040 1.87927 1.57318 1.43894 1.07311 1.05075 1.61975 1.21430 0.79763 1.00805 1.00218 1.19709 0.95838 0.86575 1.45429 0.90706 1.26120 0.96848 1.03223 0.94420 1.70111 1.15495 1.31208 1.36689 0.84919 0.78396 0.77009 0.78245 1.19617 1.19032 1.20102 1.21571 0.92454 0.99473 0.96190 0.90240 0.91454 0.89705 0.82588 0.82962 0.91045 0.90065 0.91104 0.88140 0.87626 0.88767 0.89459 0.93983 0.92241 0.91793 0.91663 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.23 0.71 -0.74 16 2 C -0.11 -2.02 5.87 -19.91 -0.12 -2.14 16 3 C -0.08 -1.24 9.69 22.35 0.22 -1.02 16 4 C -0.13 -2.29 9.66 22.23 0.21 -2.07 16 5 C -0.05 -1.08 5.92 -19.55 -0.12 -1.20 16 6 C -0.12 -2.58 8.73 71.24 0.62 -1.96 16 7 C -0.19 -4.85 5.87 -20.15 -0.12 -4.97 16 8 C 0.40 12.04 7.05 28.03 0.20 12.24 16 9 O -0.47 -15.64 12.98 -2.95 -0.04 -15.68 16 10 C -0.14 -4.50 3.69 29.84 0.11 -4.39 16 11 C -0.11 -4.06 3.58 29.84 0.11 -3.95 16 12 C 0.44 21.89 7.63 87.66 0.67 22.56 16 13 O -0.63 -35.38 15.66 -3.08 -0.05 -35.43 16 14 N -0.46 -24.92 3.02 -658.89 -1.99 -26.91 16 15 C 0.12 5.64 8.48 127.77 1.08 6.72 16 16 C -0.35 -20.28 9.30 84.04 0.78 -19.50 16 17 H 0.08 4.63 7.40 -2.91 -0.02 4.61 16 18 C 0.00 -0.24 5.00 84.93 0.42 0.18 16 19 N -0.90 -48.73 10.78 21.67 0.23 -48.49 16 20 Si 0.99 43.04 29.58 68.60 2.03 45.07 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 C -0.08 -1.78 9.12 22.58 0.21 -1.58 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.08 0.77 8.08 -2.38 -0.02 0.75 16 28 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 29 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.31 8.04 -2.39 -0.02 1.30 16 32 H 0.07 1.87 5.87 -2.39 -0.01 1.85 16 33 H 0.10 3.33 8.10 -2.38 -0.02 3.31 16 34 H 0.11 3.37 7.86 -2.39 -0.02 3.35 16 35 H 0.09 3.36 7.36 -2.39 -0.02 3.34 16 36 H 0.09 3.28 8.06 -2.39 -0.02 3.27 16 37 H 0.04 2.01 7.81 -2.39 -0.02 1.99 16 38 H 0.06 2.90 6.74 -2.39 -0.02 2.89 16 39 H 0.06 2.47 6.55 -2.39 -0.02 2.45 16 40 H 0.27 13.84 8.31 -92.71 -0.77 13.06 16 41 H 0.13 2.97 6.99 -2.91 -0.02 2.95 16 Total: -1.00 -70.22 340.58 6.21 -64.01 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.03 Total: 19.24 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.99 Total: -1.82 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.76 Total: -75.40 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.09 Total: -51.10 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.22 6.21 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299509845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.684 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds