Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99888 * 2 1 4 4 C 1.38216 * 119.99583 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00245 * 359.97294 * 4 3 2 6 6 C 1.38211 * 119.99857 * 359.75181 * 5 4 3 7 7 C 1.38215 * 119.99771 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99992 * 0.02562 * 7 2 1 9 9 C 1.50696 * 109.54277 * 61.53246 * 8 7 2 10 10 O 1.21296 * 120.00166 * 236.10841 * 9 8 7 11 11 N 1.34774 * 120.00183 * 56.11845 * 9 8 7 12 12 C 1.37100 * 119.99950 * 174.92851 * 11 9 8 13 13 H 1.07997 * 120.00274 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99592 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99885 * 179.72007 * 14 12 11 17 17 H 1.48504 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47179 * 119.99878 * 16 14 12 19 19 H 1.48500 * 109.47477 * 239.99925 * 16 14 12 20 20 C 1.53177 * 109.54095 * 181.71111 * 8 7 2 21 21 C 1.53284 * 109.06293 * 176.85061 * 20 8 7 22 22 O 1.42899 * 109.45757 * 302.44457 * 21 20 8 23 23 C 1.42901 * 114.10242 * 61.15981 * 22 21 20 24 24 C 1.53090 * 109.41304 * 298.84225 * 23 22 21 25 25 H 1.09002 * 109.47019 * 265.30918 * 1 2 3 26 26 H 1.09004 * 109.46904 * 25.31016 * 1 2 3 27 27 H 1.09000 * 109.47248 * 145.30719 * 1 2 3 28 28 H 1.07995 * 120.00430 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99881 * 179.97438 * 4 3 2 30 30 H 1.07996 * 119.99898 * 179.97438 * 5 4 3 31 31 H 1.07998 * 120.00010 * 180.26928 * 6 5 4 32 32 H 0.97001 * 119.99968 * 354.91688 * 11 9 8 33 33 H 0.97009 * 120.00264 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.52204 * 296.84003 * 20 8 7 35 35 H 1.09000 * 109.52443 * 57.03252 * 20 8 7 36 36 H 1.08999 * 109.45795 * 182.44892 * 21 20 8 37 37 H 1.09003 * 109.45684 * 62.44202 * 21 20 8 38 38 H 1.08996 * 109.48713 * 178.85513 * 23 22 21 39 39 H 1.09007 * 109.48962 * 58.82248 * 23 22 21 40 40 H 1.09005 * 109.52107 * 297.69835 * 24 23 22 41 41 H 1.09005 * 109.52270 * 177.51122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5807 -1.1970 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 6 0.6067 -2.6004 -1.2482 10 8 -0.5897 -2.7813 -1.1632 11 7 1.1867 -2.4876 -2.4595 12 6 0.4441 -2.6803 -3.5957 13 1 -0.6055 -2.9229 -3.5202 14 6 1.0421 -2.5634 -4.8445 15 7 2.3191 -2.2677 -4.9365 16 14 0.0321 -2.8336 -6.3926 17 1 -1.3681 -3.1587 -6.0197 18 1 0.0512 -1.5992 -7.2178 19 1 0.6104 -3.9583 -7.1710 20 6 2.4379 -3.6673 0.0443 21 6 1.6599 -4.9857 0.1235 22 8 0.8133 -4.9704 1.2746 23 6 -0.1657 -3.9295 1.2652 24 6 0.5374 -2.5700 1.2329 25 1 -0.3633 -0.0840 1.0242 26 1 -0.3633 0.9291 -0.4394 27 1 -0.3634 -0.8450 -0.5849 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.3517 -0.0001 -0.0013 31 1 4.1206 -2.1323 0.0097 32 1 2.1296 -2.2699 -2.5274 33 1 2.7365 -2.1858 -5.8084 34 1 3.0510 -3.6572 -0.8569 35 1 3.0768 -3.5685 0.9219 36 1 2.3609 -5.8169 0.1988 37 1 1.0518 -5.1029 -0.7735 38 1 -0.7799 -3.9999 2.1629 39 1 -0.7979 -4.0328 0.3832 40 1 1.1380 -2.4490 2.1345 41 1 -0.2075 -1.7758 1.1811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299720178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -59.608123 kcal Electronic energy + Delta-G solvation = -24592.036663 eV Core-core repulsion = 21243.607379 eV Total energy + Delta-G solvation = -3348.429284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76823 -38.36754 -37.28085 -34.25228 -33.90167 -32.57070 -31.28863 -30.33808 -29.72216 -26.77901 -25.72811 -24.36823 -23.30782 -21.71530 -21.15229 -20.52098 -18.51846 -17.79353 -16.60616 -16.03017 -15.55668 -15.34320 -14.89662 -14.83455 -14.55981 -14.10025 -13.98374 -13.77043 -13.35372 -12.97949 -12.87091 -12.67088 -12.38348 -11.89426 -11.79031 -11.57385 -11.52908 -11.37128 -11.16812 -10.86934 -10.74819 -10.67943 -10.39519 -10.30549 -10.08053 -9.91707 -9.52587 -9.15320 -8.60559 -8.37520 -8.02221 -7.95605 -6.47641 -3.88699 1.66951 1.71732 3.11032 3.23024 3.29432 3.76517 4.04469 4.13004 4.32034 4.76322 4.96593 5.04974 5.20927 5.23138 5.27577 5.31702 5.39470 5.42563 5.63452 5.69028 5.82162 5.89163 5.92722 6.00751 6.03888 6.08692 6.12387 6.17836 6.26834 6.30610 6.34972 6.42551 6.47322 6.66964 6.75386 6.79133 6.83708 7.04898 7.33708 7.49071 7.64402 7.98793 8.53023 9.09871 9.47540 9.96511 10.69060 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.007635 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.855763 B = 3666.512131 C = 4742.792425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.067 4.067 8 C -0.030 4.030 9 C 0.455 3.545 10 O -0.590 6.590 11 N -0.548 5.548 12 C -0.303 4.303 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.893 5.893 16 Si 0.927 3.073 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.142 4.142 21 C 0.062 3.938 22 O -0.391 6.391 23 C 0.048 3.952 24 C -0.130 4.130 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.394 0.606 33 H 0.272 0.728 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 2.648 9.963 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.067 4.067 8 C -0.034 4.034 9 C 0.241 3.759 10 O -0.477 6.477 11 N -0.181 5.181 12 C -0.432 4.432 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.754 3.246 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.180 4.180 21 C -0.015 4.015 22 O -0.310 6.310 23 C -0.028 4.028 24 C -0.168 4.168 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.227 0.773 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.518 2.401 9.959 10.549 hybrid contribution 0.404 0.470 -1.202 1.352 sum 2.923 2.871 8.757 9.668 Atomic orbital electron populations 1.21383 0.91267 1.04845 1.02417 1.19766 0.96288 0.92361 0.98071 1.20975 0.94218 0.97244 1.01609 1.21036 0.94259 0.97789 1.01028 1.21018 0.99458 0.92526 1.01467 1.21132 0.93536 0.98339 1.00175 1.19558 0.93335 0.93573 1.00255 1.19679 0.95399 0.92310 0.96008 1.19347 0.88077 0.84502 0.83947 1.90437 1.14869 1.56202 1.86236 1.41893 1.12375 1.59519 1.04312 1.19776 0.95678 1.44891 0.82899 0.87739 1.25282 0.95975 0.96968 0.99439 1.69631 1.10290 1.47618 1.25831 0.85834 0.79882 0.77914 0.80940 1.19151 1.20710 1.20681 1.22348 0.97950 0.94760 1.02932 1.22548 0.93056 0.96568 0.89309 1.87797 1.47938 1.52517 1.42735 1.22908 0.90723 0.85671 1.03472 1.22189 0.99217 0.99904 0.95492 0.91380 0.92390 0.87618 0.86495 0.86613 0.86446 0.85716 0.77262 0.91806 0.90233 0.90661 0.89286 0.92419 0.90055 0.89342 0.91872 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.07 36.01 0.29 -2.16 16 2 C -0.06 -1.12 5.67 -104.62 -0.59 -1.72 16 3 C -0.12 -1.89 9.68 -39.58 -0.38 -2.27 16 4 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 5 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 6 C -0.11 -1.80 8.98 -39.58 -0.36 -2.16 16 7 C -0.07 -1.17 4.34 -104.62 -0.45 -1.62 16 8 C -0.03 -0.55 0.38 -156.63 -0.06 -0.61 16 9 C 0.45 10.19 3.26 -10.99 -0.04 10.16 16 10 O -0.59 -14.56 11.87 5.54 0.07 -14.50 16 11 N -0.55 -13.53 5.09 -10.96 -0.06 -13.59 16 12 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 13 H 0.10 2.94 7.17 -52.49 -0.38 2.57 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 16 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.14 -2.34 3.55 -26.49 -0.09 -2.43 16 21 C 0.06 1.05 6.62 37.30 0.25 1.30 16 22 O -0.39 -6.92 10.77 -35.23 -0.38 -7.29 16 23 C 0.05 0.84 6.55 37.20 0.24 1.08 16 24 C -0.13 -2.20 4.25 -26.59 -0.11 -2.31 16 25 H 0.07 1.02 6.79 -51.93 -0.35 0.67 16 26 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 27 H 0.11 2.17 3.65 -51.93 -0.19 1.98 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.77 5.91 -52.49 -0.31 1.46 16 32 H 0.39 9.75 7.42 -40.82 -0.30 9.44 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.08 1.33 7.43 -51.93 -0.39 0.94 16 35 H 0.07 1.09 7.41 -51.93 -0.38 0.71 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.12 7.38 -51.93 -0.38 0.74 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.77 5.67 -51.92 -0.29 1.48 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.51 4.38 -51.93 -0.23 1.28 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -29.13 316.44 -7.54 -36.67 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -5.30 Total: 16.37 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.34 Total: -14.86 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.67 Total: -36.82 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.31 Total: -21.79 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.13 -7.54 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299720178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.939 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds