Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99888 * 2 1 4 4 C 1.38216 * 119.99583 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00245 * 359.97294 * 4 3 2 6 6 C 1.38211 * 119.99857 * 359.75181 * 5 4 3 7 7 C 1.38215 * 119.99771 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99992 * 0.02562 * 7 2 1 9 9 C 1.50696 * 109.54277 * 61.53246 * 8 7 2 10 10 O 1.21296 * 120.00166 * 236.10841 * 9 8 7 11 11 N 1.34774 * 120.00183 * 56.11845 * 9 8 7 12 12 C 1.37100 * 119.99950 * 174.92851 * 11 9 8 13 13 H 1.07997 * 120.00274 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99592 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99885 * 179.72007 * 14 12 11 17 17 H 1.48504 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47179 * 119.99878 * 16 14 12 19 19 H 1.48500 * 109.47477 * 239.99925 * 16 14 12 20 20 C 1.53177 * 109.54095 * 181.71111 * 8 7 2 21 21 C 1.53284 * 109.06293 * 176.85061 * 20 8 7 22 22 O 1.42899 * 109.45757 * 302.44457 * 21 20 8 23 23 C 1.42901 * 114.10242 * 61.15981 * 22 21 20 24 24 C 1.53090 * 109.41304 * 298.84225 * 23 22 21 25 25 H 1.09002 * 109.47019 * 265.30918 * 1 2 3 26 26 H 1.09004 * 109.46904 * 25.31016 * 1 2 3 27 27 H 1.09000 * 109.47248 * 145.30719 * 1 2 3 28 28 H 1.07995 * 120.00430 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99881 * 179.97438 * 4 3 2 30 30 H 1.07996 * 119.99898 * 179.97438 * 5 4 3 31 31 H 1.07998 * 120.00010 * 180.26928 * 6 5 4 32 32 H 0.97001 * 119.99968 * 354.91688 * 11 9 8 33 33 H 0.97009 * 120.00264 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.52204 * 296.84003 * 20 8 7 35 35 H 1.09000 * 109.52443 * 57.03252 * 20 8 7 36 36 H 1.08999 * 109.45795 * 182.44892 * 21 20 8 37 37 H 1.09003 * 109.45684 * 62.44202 * 21 20 8 38 38 H 1.08996 * 109.48713 * 178.85513 * 23 22 21 39 39 H 1.09007 * 109.48962 * 58.82248 * 23 22 21 40 40 H 1.09005 * 109.52107 * 297.69835 * 24 23 22 41 41 H 1.09005 * 109.52270 * 177.51122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5807 -1.1970 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 6 0.6067 -2.6004 -1.2482 10 8 -0.5897 -2.7813 -1.1632 11 7 1.1867 -2.4876 -2.4595 12 6 0.4441 -2.6803 -3.5957 13 1 -0.6055 -2.9229 -3.5202 14 6 1.0421 -2.5634 -4.8445 15 7 2.3191 -2.2677 -4.9365 16 14 0.0321 -2.8336 -6.3926 17 1 -1.3681 -3.1587 -6.0197 18 1 0.0512 -1.5992 -7.2178 19 1 0.6104 -3.9583 -7.1710 20 6 2.4379 -3.6673 0.0443 21 6 1.6599 -4.9857 0.1235 22 8 0.8133 -4.9704 1.2746 23 6 -0.1657 -3.9295 1.2652 24 6 0.5374 -2.5700 1.2329 25 1 -0.3633 -0.0840 1.0242 26 1 -0.3633 0.9291 -0.4394 27 1 -0.3634 -0.8450 -0.5849 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.3517 -0.0001 -0.0013 31 1 4.1206 -2.1323 0.0097 32 1 2.1296 -2.2699 -2.5274 33 1 2.7365 -2.1858 -5.8084 34 1 3.0510 -3.6572 -0.8569 35 1 3.0768 -3.5685 0.9219 36 1 2.3609 -5.8169 0.1988 37 1 1.0518 -5.1029 -0.7735 38 1 -0.7799 -3.9999 2.1629 39 1 -0.7979 -4.0328 0.3832 40 1 1.1380 -2.4490 2.1345 41 1 -0.2075 -1.7758 1.1811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299720178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -77.209519 kcal Electronic energy + Delta-G solvation = -24592.799917 eV Core-core repulsion = 21243.607379 eV Total energy + Delta-G solvation = -3349.192538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.22791 -39.67217 -38.93426 -36.09394 -35.38687 -33.88958 -33.15122 -31.74878 -30.95815 -28.10446 -27.44200 -25.94842 -24.67133 -23.08749 -22.61813 -21.77109 -20.30242 -19.62766 -17.92826 -17.58230 -16.95368 -16.82196 -16.42887 -16.28648 -16.05279 -15.83873 -15.31017 -15.21164 -14.89723 -14.49717 -14.20316 -13.94057 -13.74114 -13.54964 -13.22566 -13.07755 -13.01552 -12.81525 -12.77894 -12.41800 -12.18214 -12.14405 -12.06407 -11.96328 -11.54463 -11.31369 -11.29112 -10.62766 -10.13905 -9.94899 -9.62909 -9.36132 -8.47030 -5.95333 0.46491 0.53449 1.33306 1.39087 1.52492 2.01475 2.27010 2.84472 2.95695 3.17261 3.18510 3.63353 3.75004 3.86449 4.04633 4.05648 4.11282 4.26765 4.30252 4.36309 4.46178 4.56658 4.62486 4.64688 4.74139 4.75578 4.80234 4.84670 4.94307 4.97819 5.06742 5.09320 5.19676 5.23493 5.39589 5.41810 5.62060 5.65263 5.79424 5.99566 6.17505 6.24309 6.57768 7.11161 7.55457 8.08681 8.69983 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.007635 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.855763 B = 3666.512131 C = 4742.792425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.122 4.122 7 C -0.088 4.088 8 C -0.024 4.024 9 C 0.466 3.534 10 O -0.617 6.617 11 N -0.562 5.562 12 C -0.330 4.330 13 H 0.081 0.919 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.988 3.012 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.137 4.137 21 C 0.061 3.939 22 O -0.392 6.392 23 C 0.048 3.952 24 C -0.127 4.127 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.392 0.608 33 H 0.277 0.723 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.021 0.979 38 H 0.109 0.891 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 3.456 10.982 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.140 4.140 7 C -0.088 4.088 8 C -0.028 4.028 9 C 0.254 3.746 10 O -0.505 6.505 11 N -0.196 5.196 12 C -0.460 4.460 13 H 0.099 0.901 14 C -0.210 4.210 15 N -0.557 5.557 16 Si 0.812 3.188 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.175 4.175 21 C -0.016 4.016 22 O -0.311 6.311 23 C -0.028 4.028 24 C -0.164 4.164 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.225 0.775 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.039 0.961 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.254 3.208 10.994 12.217 hybrid contribution -0.153 0.254 -1.429 1.460 sum 4.100 3.462 9.565 10.967 Atomic orbital electron populations 1.21275 0.91950 1.03406 1.02850 1.19918 0.96147 0.93340 0.99459 1.21255 0.95160 0.97232 1.01249 1.21454 0.93887 0.99218 0.99306 1.21426 1.01076 0.91965 1.00055 1.21378 0.92900 0.99798 0.99946 1.19559 0.94207 0.92898 1.02155 1.19602 0.95448 0.93972 0.93745 1.20150 0.88072 0.81651 0.84726 1.90423 1.16600 1.56523 1.86950 1.41894 1.12084 1.61073 1.04560 1.19701 0.95102 1.46615 0.84561 0.90129 1.25988 0.97023 0.96424 1.01614 1.69693 1.11191 1.48152 1.26651 0.84947 0.78145 0.78232 0.77511 1.19705 1.19861 1.19590 1.22352 0.97641 0.93482 1.04031 1.22629 0.92992 0.98232 0.87768 1.87796 1.47945 1.52710 1.42630 1.22890 0.90643 0.86081 1.03178 1.22189 0.99200 0.99338 0.95708 0.89661 0.91772 0.91357 0.84749 0.83485 0.83465 0.84351 0.77451 0.91397 0.90674 0.87719 0.86205 0.96056 0.87318 0.92852 0.89672 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.07 71.24 0.57 -4.22 16 2 C -0.09 -3.00 5.67 -19.86 -0.11 -3.11 16 3 C -0.13 -3.78 9.68 22.27 0.22 -3.56 16 4 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 5 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 6 C -0.12 -3.60 8.98 22.27 0.20 -3.40 16 7 C -0.09 -2.99 4.34 -19.86 -0.09 -3.07 16 8 C -0.02 -0.88 0.38 -53.56 -0.02 -0.90 16 9 C 0.47 21.65 3.26 87.66 0.29 21.94 16 10 O -0.62 -32.12 11.87 -3.08 -0.04 -32.16 16 11 N -0.56 -28.84 5.09 -306.99 -1.56 -30.40 16 12 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 13 H 0.08 4.82 7.17 -2.91 -0.02 4.80 16 14 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 15 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 16 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 C -0.14 -4.37 3.55 30.75 0.11 -4.26 16 21 C 0.06 2.03 6.62 72.08 0.48 2.50 16 22 O -0.39 -13.49 10.77 -148.98 -1.60 -15.09 16 23 C 0.05 1.66 6.55 72.01 0.47 2.13 16 24 C -0.13 -4.18 4.25 30.68 0.13 -4.05 16 25 H 0.09 2.53 6.79 -2.39 -0.02 2.52 16 26 H 0.06 2.04 8.05 -2.38 -0.02 2.02 16 27 H 0.07 2.91 3.65 -2.39 -0.01 2.90 16 28 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 3.56 5.91 -2.91 -0.02 3.55 16 32 H 0.39 20.00 7.42 -92.71 -0.69 19.31 16 33 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 34 H 0.07 2.46 7.43 -2.38 -0.02 2.45 16 35 H 0.10 2.74 7.41 -2.39 -0.02 2.72 16 36 H 0.12 3.22 8.14 -2.39 -0.02 3.21 16 37 H 0.02 0.86 7.38 -2.39 -0.02 0.84 16 38 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.05 2.23 5.67 -2.38 -0.01 2.21 16 40 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.09 2.89 4.38 -2.38 -0.01 2.88 16 Total: -1.00 -64.79 316.44 3.46 -61.33 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: 0.37 Total: 44.28 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.97 Total: -23.71 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -1.28 Total: -79.70 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.64 Total: -47.25 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.79 3.46 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299720178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.879 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds