Wall clock time and date at job start Tue Mar 31 2020 07:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 111.01619 * 2 1 4 4 N 1.46492 * 109.47373 * 297.23158 * 3 2 1 5 5 C 1.34774 * 119.99879 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00289 * 0.02562 * 5 4 3 7 7 C 1.47649 * 119.99844 * 180.02562 * 5 4 3 8 8 C 1.40006 * 119.89588 * 359.72628 * 7 5 4 9 9 C 1.36321 * 120.10758 * 179.71898 * 8 7 5 10 10 C 1.40892 * 119.88679 * 0.55331 * 9 8 7 11 11 C 1.41108 * 120.09838 * 179.74400 * 10 9 8 12 12 H 1.08004 * 119.99589 * 204.62111 * 11 10 9 13 13 C 1.40226 * 120.00125 * 24.61910 * 11 10 9 14 14 N 1.30645 * 120.00230 * 17.89577 * 13 11 10 15 15 Si 1.86803 * 119.99706 * 197.89791 * 13 11 10 16 16 H 1.48500 * 109.47201 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47173 * 120.00186 * 15 13 11 18 18 H 1.48501 * 109.46926 * 239.99756 * 15 13 11 19 19 C 1.40888 * 119.79566 * 359.71976 * 10 9 8 20 20 C 1.36311 * 119.89084 * 0.02562 * 19 10 9 21 21 C 1.55561 * 111.13776 * 124.35762 * 2 1 3 22 22 C 1.54385 * 102.27575 * 83.74398 * 21 2 1 23 23 O 1.43237 * 107.58660 * 21.35676 * 22 21 2 24 24 C 1.43653 * 109.97385 * 1.71256 * 23 22 21 25 25 H 1.09002 * 109.47113 * 182.76359 * 1 2 3 26 26 H 1.08992 * 109.47209 * 302.76348 * 1 2 3 27 27 H 1.09001 * 109.47262 * 62.76641 * 1 2 3 28 28 H 1.08999 * 109.46916 * 57.24102 * 3 2 1 29 29 H 1.09008 * 109.46929 * 177.22936 * 3 2 1 30 30 H 0.97004 * 120.00117 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.94937 * 359.97438 * 8 7 5 32 32 H 1.07999 * 120.05780 * 180.27878 * 9 8 7 33 33 H 0.96996 * 119.99737 * 179.97438 * 14 13 11 34 34 H 1.07992 * 120.04947 * 180.02562 * 19 10 9 35 35 H 1.07996 * 119.94875 * 180.02562 * 20 19 10 36 36 H 1.09004 * 110.83524 * 325.55126 * 21 2 1 37 37 H 1.08997 * 110.84386 * 201.94031 * 21 2 1 38 38 H 1.08995 * 109.83209 * 261.84773 * 22 21 2 39 39 H 1.08998 * 109.83299 * 140.86685 * 22 21 2 40 40 H 1.09005 * 110.30395 * 94.48504 * 24 23 22 41 41 H 1.08997 * 110.30788 * 216.55499 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0787 1.4283 0.0000 4 7 1.6639 2.1108 -1.2280 5 6 2.0344 3.3879 -1.4472 6 8 2.7132 3.9735 -0.6259 7 6 1.6158 4.0760 -2.6847 8 6 0.8389 3.3979 -3.6316 9 6 0.4453 4.0308 -4.7730 10 6 0.8313 5.3659 -5.0042 11 6 0.4309 6.0237 -6.1867 12 1 1.0101 6.8526 -6.5661 13 6 -0.7189 5.6011 -6.8691 14 7 -1.6040 4.8578 -6.2599 15 14 -0.9851 6.1009 -8.6492 16 1 0.1544 6.9374 -9.1042 17 1 -1.0766 4.8848 -9.4964 18 1 -2.2453 6.8785 -8.7618 19 6 1.6180 6.0424 -4.0510 20 6 2.0024 5.4028 -2.9103 21 6 2.0909 -0.8188 1.1978 22 6 2.0560 -2.2630 0.6532 23 8 2.0316 -2.1858 -0.7769 24 6 2.0884 -0.8127 -1.1952 25 1 -0.3633 -1.0265 0.0495 26 1 -0.3633 0.5561 0.8641 27 1 -0.3634 0.4703 -0.9137 28 1 1.6899 1.9668 0.8642 29 1 3.1672 1.3993 0.0497 30 1 1.1226 1.6435 -1.8835 31 1 0.5475 2.3729 -3.4556 32 1 -0.1578 3.5083 -5.5008 33 1 -2.3995 4.5658 -6.7319 34 1 1.9159 7.0659 -4.2239 35 1 2.6050 5.9205 -2.1788 36 1 1.4472 -0.7182 2.0717 37 1 3.1121 -0.5165 1.4299 38 1 1.1610 -2.7717 1.0112 39 1 2.9450 -2.8028 0.9792 40 1 3.1186 -0.5225 -1.4017 41 1 1.4687 -0.6605 -2.0788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330481958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:21 Heat of formation + Delta-G solvation = -96.976659 kcal Electronic energy + Delta-G solvation = -22472.336887 eV Core-core repulsion = 19122.287181 eV Total energy + Delta-G solvation = -3350.049706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26505 -40.36340 -38.87913 -36.49056 -35.66989 -33.89277 -31.98032 -31.29792 -30.62255 -28.40371 -27.72856 -26.48758 -23.85430 -23.07877 -22.76036 -21.20284 -20.61468 -19.36783 -18.58107 -17.38511 -17.24722 -16.86657 -16.55963 -16.28779 -15.74967 -15.58895 -15.33823 -15.12726 -14.91903 -14.45882 -14.35724 -13.93014 -13.74440 -13.65973 -13.30368 -13.23336 -12.98752 -12.85052 -12.62001 -12.46714 -12.37368 -11.98387 -11.77416 -11.75823 -11.70369 -11.37416 -11.12138 -10.71853 -10.46403 -10.08207 -9.57521 -9.40371 -8.79641 -6.48232 0.44042 1.15104 1.38838 1.42482 1.55640 2.12238 2.18083 2.33831 2.78503 2.87496 3.35249 3.66314 3.69633 3.76786 4.02936 4.17217 4.23866 4.28460 4.31011 4.44756 4.55133 4.66047 4.71450 4.78410 4.84349 4.86179 4.92429 4.96733 5.03115 5.05956 5.09670 5.15975 5.29848 5.31127 5.53072 5.59332 5.82132 5.94214 5.99539 6.01106 6.22870 6.54077 6.67639 6.77332 6.88979 7.42703 8.15693 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.003379 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.383278 B = 8283.805204 C = 9096.719173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.142 3.858 4 N -0.723 5.723 5 C 0.572 3.428 6 O -0.605 6.605 7 C -0.294 4.294 8 C -0.053 4.053 9 C -0.198 4.198 10 C 0.102 3.898 11 C -0.473 4.473 12 H 0.084 0.916 13 C 0.039 3.961 14 N -0.797 5.797 15 Si 0.987 3.013 16 H -0.258 1.258 17 H -0.260 1.260 18 H -0.264 1.264 19 C -0.254 4.254 20 C -0.032 4.032 21 C -0.137 4.137 22 C 0.047 3.953 23 O -0.403 6.403 24 C 0.058 3.942 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.297 0.703 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -12.394 7.706 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C 0.018 3.982 4 N -0.375 5.375 5 C 0.366 3.634 6 O -0.490 6.490 7 C -0.299 4.299 8 C -0.072 4.072 9 C -0.217 4.217 10 C 0.099 3.901 11 C -0.500 4.500 12 H 0.103 0.897 13 C -0.181 4.181 14 N -0.420 5.420 15 Si 0.807 3.193 16 H -0.181 1.181 17 H -0.184 1.184 18 H -0.189 1.189 19 C -0.273 4.273 20 C -0.052 4.052 21 C -0.175 4.175 22 C -0.029 4.029 23 O -0.323 6.323 24 C -0.019 4.019 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.812 -12.318 8.156 14.796 hybrid contribution -0.344 0.490 -0.811 1.007 sum 0.468 -11.828 7.346 13.931 Atomic orbital electron populations 1.21755 0.91970 1.02877 1.02714 1.22471 0.97599 0.93352 0.96681 1.21212 0.99125 0.90864 0.86976 1.45750 1.55881 1.12730 1.23178 1.18371 0.78032 0.81391 0.85621 1.90614 1.42296 1.67319 1.48761 1.19185 1.15004 0.97074 0.98611 1.20701 0.94984 0.98256 0.93265 1.21012 1.06303 0.95102 0.99266 1.18136 0.88509 0.91966 0.91534 1.20138 1.08373 1.14842 1.06670 0.89742 1.26912 0.93963 0.92865 1.04330 1.69761 1.07428 1.25620 1.39232 0.85073 0.79311 0.79410 0.75519 1.18116 1.18429 1.18857 1.20857 1.10216 0.99712 0.96524 1.20506 0.95459 0.93524 0.95665 1.23219 1.03005 0.93483 0.97817 1.23280 1.02682 0.96966 0.79939 1.88379 1.95707 1.25719 1.22470 1.23494 1.00542 0.80694 0.97158 0.91009 0.91348 0.92588 0.91686 0.92082 0.75715 0.86036 0.86827 0.89173 0.87844 0.87937 0.87795 0.89666 0.90028 0.90413 0.92303 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.46 71.98 0.61 -1.79 16 2 C -0.10 -1.89 0.64 -50.63 -0.03 -1.92 16 3 C 0.14 3.55 4.66 86.38 0.40 3.95 16 4 N -0.72 -22.26 5.09 -466.16 -2.37 -24.63 16 5 C 0.57 23.58 7.76 86.73 0.67 24.25 16 6 O -0.61 -28.38 16.32 -3.96 -0.06 -28.45 16 7 C -0.29 -13.28 5.89 -19.93 -0.12 -13.39 16 8 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 9 C -0.20 -9.66 8.64 22.47 0.19 -9.47 16 10 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 11 C -0.47 -23.79 9.04 23.46 0.21 -23.58 16 12 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 13 C 0.04 1.77 5.14 85.35 0.44 2.21 16 14 N -0.80 -37.71 10.95 21.87 0.24 -37.47 16 15 Si 0.99 34.56 29.60 68.60 2.03 36.59 16 16 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 18 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 19 C -0.25 -12.56 9.73 22.47 0.22 -12.34 16 20 C -0.03 -1.55 9.52 22.25 0.21 -1.33 16 21 C -0.14 -1.97 6.02 31.95 0.19 -1.78 16 22 C 0.05 0.73 7.45 72.45 0.54 1.27 16 23 O -0.40 -8.93 11.36 -148.98 -1.69 -10.62 16 24 C 0.06 1.21 6.20 72.65 0.45 1.66 16 25 H 0.07 1.14 7.85 -2.39 -0.02 1.13 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.08 7.23 -2.39 -0.02 1.06 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.61 8.11 -2.38 -0.02 1.59 16 30 H 0.41 11.07 5.16 -92.71 -0.48 10.59 16 31 H 0.12 4.26 6.37 -2.91 -0.02 4.24 16 32 H 0.11 5.64 6.15 -2.91 -0.02 5.62 16 33 H 0.30 12.43 8.29 -92.71 -0.77 11.66 16 34 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.10 4.77 7.63 -2.91 -0.02 4.74 16 36 H 0.10 1.14 8.04 -2.38 -0.02 1.12 16 37 H 0.08 1.18 8.01 -2.39 -0.02 1.16 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.30 8.03 -2.38 -0.02 1.28 16 41 H 0.09 1.80 7.90 -2.39 -0.02 1.78 16 Total: -1.00 -61.30 336.16 2.79 -58.52 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.56 Total: 35.28 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.09 Total: -29.21 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -2.13 Total: -62.11 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.76 Total: -39.07 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Total: -61.30 2.79 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330481958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.461 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds