Wall clock time and date at job start Tue Mar 31 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 110.46224 * 2 1 4 4 N 1.46505 * 109.47264 * 57.39372 * 3 2 1 5 5 C 1.34770 * 120.00224 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00591 * 0.02562 * 5 4 3 7 7 C 1.47647 * 119.99996 * 180.02562 * 5 4 3 8 8 C 1.40010 * 119.89356 * 359.72919 * 7 5 4 9 9 C 1.36320 * 120.10444 * 179.71709 * 8 7 5 10 10 C 1.40888 * 119.89290 * 0.57545 * 9 8 7 11 11 C 1.41105 * 120.10369 * 179.67387 * 10 9 8 12 12 H 1.08007 * 119.99978 * 204.66012 * 11 10 9 13 13 C 1.40226 * 120.00187 * 24.66377 * 11 10 9 14 14 N 1.30648 * 119.99880 * 17.86677 * 13 11 10 15 15 Si 1.86794 * 120.00153 * 197.86800 * 13 11 10 16 16 H 1.48507 * 109.47044 * 60.00169 * 15 13 11 17 17 H 1.48498 * 109.47466 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47273 * 300.00202 * 15 13 11 19 19 C 1.40886 * 119.79205 * 359.69872 * 10 9 8 20 20 C 1.36317 * 119.88993 * 359.97438 * 19 10 9 21 21 C 1.54515 * 110.51041 * 237.39389 * 2 1 3 22 22 C 1.54483 * 104.06173 * 241.35742 * 21 2 1 23 23 O 1.44425 * 104.80484 * 336.02306 * 22 21 2 24 24 C 1.44419 * 105.27665 * 40.51067 * 23 22 21 25 25 H 1.08998 * 109.47539 * 182.60342 * 1 2 3 26 26 H 1.09006 * 109.47048 * 302.60262 * 1 2 3 27 27 H 1.09003 * 109.47357 * 62.60201 * 1 2 3 28 28 H 1.08999 * 109.47652 * 177.39319 * 3 2 1 29 29 H 1.09003 * 109.47183 * 297.39922 * 3 2 1 30 30 H 0.97001 * 119.99864 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94721 * 0.02562 * 8 7 5 32 32 H 1.08010 * 120.05432 * 180.29378 * 9 8 7 33 33 H 0.96996 * 119.99888 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.05428 * 179.97438 * 19 10 9 35 35 H 1.08006 * 119.94492 * 179.97438 * 20 19 10 36 36 H 1.09000 * 110.50640 * 359.97438 * 21 2 1 37 37 H 1.08997 * 110.50697 * 122.71168 * 21 2 1 38 38 H 1.08999 * 110.36888 * 94.85206 * 22 21 2 39 39 H 1.08995 * 110.36849 * 217.18547 * 22 21 2 40 40 H 1.08998 * 110.37626 * 200.65805 * 24 23 22 41 41 H 1.08997 * 110.37487 * 78.32013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4334 0.0000 4 7 1.5382 2.1511 1.1636 5 6 1.8766 3.4391 1.3707 6 8 2.6187 4.0057 0.5918 7 6 1.3464 4.1622 2.5437 8 6 0.4875 3.5095 3.4362 9 6 0.0000 4.1713 4.5237 10 6 0.3520 5.5179 4.7422 11 6 -0.1556 6.2092 5.8627 12 1 -0.2352 7.2862 5.8422 13 6 -0.5566 5.4981 7.0028 14 7 -0.1528 4.2685 7.1813 15 14 -1.6681 6.3089 8.2663 16 1 -2.9464 6.7025 7.6210 17 1 -1.9445 5.3529 9.3685 18 1 -0.9977 7.5157 8.8135 19 6 1.2119 6.1722 3.8381 20 6 1.6997 5.5001 2.7571 21 6 2.0713 -0.7798 -1.2191 22 6 2.8756 -1.9415 -0.5946 23 8 3.2397 -1.4724 0.7220 24 6 2.0713 -0.7829 1.2168 25 1 -0.3634 -1.0266 0.0467 26 1 -0.3633 0.5537 0.8658 27 1 -0.3634 0.4729 -0.9124 28 1 3.1536 1.4150 0.0467 29 1 1.7487 1.9391 -0.9124 30 1 0.9459 1.6994 1.7848 31 1 0.2148 2.4785 3.2655 32 1 -0.6587 3.6655 5.2143 33 1 -0.4299 3.7768 7.9701 34 1 1.4842 7.2045 4.0013 35 1 2.3587 6.0009 2.0633 36 1 1.2489 -1.1657 -1.8215 37 1 2.7219 -0.1448 -1.8204 38 1 2.2562 -2.8354 -0.5210 39 1 3.7687 -2.1453 -1.1853 40 1 2.3464 -0.0966 2.0177 41 1 1.3285 -1.4990 1.5682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330481959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:25 Heat of formation + Delta-G solvation = -78.601925 kcal Electronic energy + Delta-G solvation = -22515.805053 eV Core-core repulsion = 19166.552135 eV Total energy + Delta-G solvation = -3349.252917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21978 -38.82862 -37.11237 -35.29145 -33.87695 -32.71437 -30.31039 -29.72636 -29.44392 -27.07995 -26.27007 -25.15775 -22.91864 -21.72703 -20.94225 -19.67484 -19.46501 -17.54091 -17.14221 -16.19991 -15.85142 -15.61673 -15.31076 -15.17121 -14.60933 -14.11628 -13.96006 -13.36712 -13.33739 -13.11079 -12.95161 -12.81381 -12.65756 -12.11339 -11.92475 -11.80544 -11.67552 -11.38229 -11.27570 -11.10453 -11.03354 -10.90878 -10.74751 -10.64354 -10.07283 -9.88527 -9.56736 -9.35642 -8.97137 -8.59052 -7.73152 -7.54972 -7.04416 -4.61161 2.23248 2.91857 2.93631 2.97657 3.02751 3.72963 3.74262 3.80664 3.87288 4.33714 4.47117 4.55881 4.65836 4.89669 4.97370 5.03594 5.40627 5.41753 5.48285 5.55659 5.57899 5.59393 5.72401 5.78575 5.89482 5.93375 6.02133 6.03283 6.17531 6.31496 6.62766 6.75938 6.81822 6.92626 7.05059 7.12675 7.42468 7.64314 7.77974 7.84831 8.06263 8.22843 8.38708 8.62186 8.74455 9.07888 9.87598 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003374 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.062114 B = 8296.840847 C = 8968.114972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.140 3.860 4 N -0.742 5.742 5 C 0.571 3.429 6 O -0.575 6.575 7 C -0.284 4.284 8 C -0.063 4.063 9 C -0.178 4.178 10 C 0.129 3.871 11 C -0.443 4.443 12 H 0.084 0.916 13 C 0.075 3.925 14 N -0.772 5.772 15 Si 0.914 3.086 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.239 4.239 20 C -0.022 4.022 21 C -0.144 4.144 22 C 0.044 3.956 23 O -0.372 6.372 24 C 0.050 3.950 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.287 0.713 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -11.164 -8.587 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C 0.016 3.984 4 N -0.396 5.396 5 C 0.366 3.634 6 O -0.457 6.457 7 C -0.289 4.289 8 C -0.082 4.082 9 C -0.197 4.197 10 C 0.126 3.874 11 C -0.471 4.471 12 H 0.103 0.897 13 C -0.147 4.147 14 N -0.395 5.395 15 Si 0.737 3.263 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.258 4.258 20 C -0.041 4.041 21 C -0.182 4.182 22 C -0.033 4.033 23 O -0.291 6.291 24 C -0.027 4.027 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.910 -11.010 -8.858 14.160 hybrid contribution -0.954 -0.001 0.837 1.269 sum -1.864 -11.011 -8.021 13.750 Atomic orbital electron populations 1.21854 0.92898 1.01975 1.02963 1.22212 0.96903 0.95777 0.95898 1.21178 0.98606 0.89057 0.89594 1.45957 1.52557 1.13041 1.28025 1.18584 0.79233 0.80298 0.85257 1.90634 1.38622 1.67928 1.48552 1.18899 1.13335 0.96308 1.00355 1.20449 0.96346 0.96793 0.94627 1.20972 1.04559 0.96274 0.97922 1.17775 0.86912 0.91905 0.90842 1.19823 1.34477 0.95413 0.97373 0.89745 1.26095 0.94522 0.94633 0.99417 1.69735 1.32935 1.10401 1.26402 0.86259 0.80902 0.80011 0.79088 1.18486 1.20048 1.18659 1.20718 1.05456 0.99999 0.99672 1.20362 0.95746 0.92642 0.95330 1.23024 1.00428 0.97333 0.97423 1.23406 0.99400 0.96041 0.84433 1.89156 1.35353 1.73761 1.30799 1.23627 0.87889 0.94856 0.96317 0.92188 0.91824 0.91817 0.91565 0.91818 0.76830 0.89504 0.86200 0.90173 0.88385 0.88118 0.90055 0.90125 0.92399 0.89155 0.88478 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.14 37.16 0.30 -1.00 16 2 C -0.11 -1.14 0.75 -152.94 -0.11 -1.25 16 3 C 0.14 1.98 4.39 -4.04 -0.02 1.96 16 4 N -0.74 -12.26 4.72 -61.31 -0.29 -12.55 16 5 C 0.57 12.20 7.76 -12.42 -0.10 12.11 16 6 O -0.58 -13.87 16.32 5.29 0.09 -13.79 16 7 C -0.28 -6.50 5.89 -104.73 -0.62 -7.12 16 8 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 9 C -0.18 -4.32 8.64 -39.27 -0.34 -4.66 16 10 C 0.13 3.27 5.57 -106.81 -0.60 2.68 16 11 C -0.44 -10.98 9.04 -37.75 -0.34 -11.32 16 12 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 13 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 14 N -0.77 -18.36 10.95 55.56 0.61 -17.75 16 15 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 16 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 17 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 C -0.24 -5.79 9.73 -39.27 -0.38 -6.18 16 20 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 21 C -0.14 -1.26 6.38 -25.16 -0.16 -1.42 16 22 C 0.04 0.40 7.63 37.94 0.29 0.69 16 23 O -0.37 -4.76 11.65 -35.23 -0.41 -5.17 16 24 C 0.05 0.57 6.53 37.94 0.25 0.82 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.40 5.83 4.83 -40.82 -0.20 5.63 16 31 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 32 H 0.12 2.94 6.15 -52.48 -0.32 2.62 16 33 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 34 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 36 H 0.08 0.57 7.73 -51.93 -0.40 0.17 16 37 H 0.08 0.72 7.73 -51.93 -0.40 0.31 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.24 7.28 -51.93 -0.38 0.86 16 41 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -28.92 334.49 -8.36 -37.28 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.70 Total: 10.51 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.67 Total: -15.70 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.32 Total: -30.30 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.32 Total: -18.96 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.92 -8.36 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330481959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.326 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds