Wall clock time and date at job start Tue Mar 31 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 110.46224 * 2 1 4 4 N 1.46505 * 109.47264 * 57.39372 * 3 2 1 5 5 C 1.34770 * 120.00224 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00591 * 0.02562 * 5 4 3 7 7 C 1.47647 * 119.99996 * 180.02562 * 5 4 3 8 8 C 1.40010 * 119.89356 * 359.72919 * 7 5 4 9 9 C 1.36320 * 120.10444 * 179.71709 * 8 7 5 10 10 C 1.40888 * 119.89290 * 0.57545 * 9 8 7 11 11 C 1.41105 * 120.10369 * 179.67387 * 10 9 8 12 12 H 1.08007 * 119.99978 * 204.66012 * 11 10 9 13 13 C 1.40226 * 120.00187 * 24.66377 * 11 10 9 14 14 N 1.30648 * 119.99880 * 17.86677 * 13 11 10 15 15 Si 1.86794 * 120.00153 * 197.86800 * 13 11 10 16 16 H 1.48507 * 109.47044 * 60.00169 * 15 13 11 17 17 H 1.48498 * 109.47466 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47273 * 300.00202 * 15 13 11 19 19 C 1.40886 * 119.79205 * 359.69872 * 10 9 8 20 20 C 1.36317 * 119.88993 * 359.97438 * 19 10 9 21 21 C 1.54515 * 110.51041 * 237.39389 * 2 1 3 22 22 C 1.54483 * 104.06173 * 241.35742 * 21 2 1 23 23 O 1.44425 * 104.80484 * 336.02306 * 22 21 2 24 24 C 1.44419 * 105.27665 * 40.51067 * 23 22 21 25 25 H 1.08998 * 109.47539 * 182.60342 * 1 2 3 26 26 H 1.09006 * 109.47048 * 302.60262 * 1 2 3 27 27 H 1.09003 * 109.47357 * 62.60201 * 1 2 3 28 28 H 1.08999 * 109.47652 * 177.39319 * 3 2 1 29 29 H 1.09003 * 109.47183 * 297.39922 * 3 2 1 30 30 H 0.97001 * 119.99864 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94721 * 0.02562 * 8 7 5 32 32 H 1.08010 * 120.05432 * 180.29378 * 9 8 7 33 33 H 0.96996 * 119.99888 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.05428 * 179.97438 * 19 10 9 35 35 H 1.08006 * 119.94492 * 179.97438 * 20 19 10 36 36 H 1.09000 * 110.50640 * 359.97438 * 21 2 1 37 37 H 1.08997 * 110.50697 * 122.71168 * 21 2 1 38 38 H 1.08999 * 110.36888 * 94.85206 * 22 21 2 39 39 H 1.08995 * 110.36849 * 217.18547 * 22 21 2 40 40 H 1.08998 * 110.37626 * 200.65805 * 24 23 22 41 41 H 1.08997 * 110.37487 * 78.32013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4334 0.0000 4 7 1.5382 2.1511 1.1636 5 6 1.8766 3.4391 1.3707 6 8 2.6187 4.0057 0.5918 7 6 1.3464 4.1622 2.5437 8 6 0.4875 3.5095 3.4362 9 6 0.0000 4.1713 4.5237 10 6 0.3520 5.5179 4.7422 11 6 -0.1556 6.2092 5.8627 12 1 -0.2352 7.2862 5.8422 13 6 -0.5566 5.4981 7.0028 14 7 -0.1528 4.2685 7.1813 15 14 -1.6681 6.3089 8.2663 16 1 -2.9464 6.7025 7.6210 17 1 -1.9445 5.3529 9.3685 18 1 -0.9977 7.5157 8.8135 19 6 1.2119 6.1722 3.8381 20 6 1.6997 5.5001 2.7571 21 6 2.0713 -0.7798 -1.2191 22 6 2.8756 -1.9415 -0.5946 23 8 3.2397 -1.4724 0.7220 24 6 2.0713 -0.7829 1.2168 25 1 -0.3634 -1.0266 0.0467 26 1 -0.3633 0.5537 0.8658 27 1 -0.3634 0.4729 -0.9124 28 1 3.1536 1.4150 0.0467 29 1 1.7487 1.9391 -0.9124 30 1 0.9459 1.6994 1.7848 31 1 0.2148 2.4785 3.2655 32 1 -0.6587 3.6655 5.2143 33 1 -0.4299 3.7768 7.9701 34 1 1.4842 7.2045 4.0013 35 1 2.3587 6.0009 2.0633 36 1 1.2489 -1.1657 -1.8215 37 1 2.7219 -0.1448 -1.8204 38 1 2.2562 -2.8354 -0.5210 39 1 3.7687 -2.1453 -1.1853 40 1 2.3464 -0.0966 2.0177 41 1 1.3285 -1.4990 1.5682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330481959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:24 Heat of formation + Delta-G solvation = -95.566592 kcal Electronic energy + Delta-G solvation = -22516.540696 eV Core-core repulsion = 19166.552135 eV Total energy + Delta-G solvation = -3349.988561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29429 -40.32598 -38.87226 -36.50456 -35.67289 -33.97084 -31.99237 -31.30272 -30.57318 -28.40471 -27.37380 -26.53599 -24.00367 -23.17949 -22.75999 -21.24357 -20.48340 -19.36770 -18.59775 -17.32371 -17.11537 -16.81768 -16.72889 -16.12141 -15.95702 -15.74397 -15.52888 -15.05402 -14.58763 -14.40171 -14.05667 -13.97016 -13.83997 -13.68106 -13.59087 -13.22103 -12.84850 -12.72051 -12.60468 -12.42819 -12.36086 -11.95541 -11.82475 -11.79188 -11.52238 -11.37266 -11.11569 -10.76059 -10.68194 -10.08513 -9.58008 -9.40921 -8.79423 -6.48530 0.43856 1.14633 1.39420 1.44850 1.52665 2.11941 2.18092 2.36018 2.78403 3.02155 3.47664 3.57515 3.68680 3.82777 4.13448 4.20579 4.24568 4.28124 4.30881 4.44026 4.60905 4.63847 4.68707 4.77269 4.83671 4.87023 4.91757 4.96864 5.02629 5.09437 5.15379 5.15520 5.28531 5.29956 5.52873 5.58798 5.81639 5.85833 5.93853 5.98860 6.22437 6.53369 6.67981 6.76854 6.88649 7.42288 8.15645 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003374 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.062114 B = 8296.840847 C = 8968.114972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.139 3.861 4 N -0.722 5.722 5 C 0.570 3.430 6 O -0.608 6.608 7 C -0.295 4.295 8 C -0.053 4.053 9 C -0.197 4.197 10 C 0.102 3.898 11 C -0.474 4.474 12 H 0.085 0.915 13 C 0.039 3.961 14 N -0.797 5.797 15 Si 0.988 3.012 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.260 1.260 19 C -0.254 4.254 20 C -0.033 4.033 21 C -0.139 4.139 22 C 0.039 3.961 23 O -0.403 6.403 24 C 0.047 3.953 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.406 0.594 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.298 0.702 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -12.939 -8.679 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C 0.016 3.984 4 N -0.375 5.375 5 C 0.364 3.636 6 O -0.493 6.493 7 C -0.299 4.299 8 C -0.072 4.072 9 C -0.216 4.216 10 C 0.099 3.901 11 C -0.501 4.501 12 H 0.103 0.897 13 C -0.181 4.181 14 N -0.420 5.420 15 Si 0.808 3.192 16 H -0.182 1.182 17 H -0.187 1.187 18 H -0.184 1.184 19 C -0.273 4.273 20 C -0.052 4.052 21 C -0.177 4.177 22 C -0.037 4.037 23 O -0.322 6.322 24 C -0.029 4.029 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.244 0.756 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.351 -12.830 -8.963 15.827 hybrid contribution -0.432 0.483 0.803 1.032 sum -2.783 -12.348 -8.160 15.060 Atomic orbital electron populations 1.21867 0.91397 1.03442 1.02813 1.22152 0.97909 0.93146 0.96775 1.21322 0.97633 0.91210 0.88270 1.45788 1.51531 1.11491 1.28645 1.18430 0.79005 0.81643 0.84540 1.90613 1.40122 1.69064 1.49453 1.19176 1.13343 0.96298 1.01131 1.20700 0.94979 0.98211 0.93277 1.21017 1.05464 0.96280 0.98865 1.18127 0.87550 0.92839 0.91590 1.20105 1.35922 0.95802 0.98281 0.89663 1.26922 0.95212 0.95082 1.00849 1.69754 1.33292 1.11531 1.27441 0.85154 0.78551 0.79060 0.76481 1.18191 1.18731 1.18381 1.20853 1.05906 1.00497 1.00055 1.20504 0.95951 0.93449 0.95323 1.23039 1.01129 0.96865 0.96666 1.23634 1.00373 0.96676 0.83012 1.89125 1.36340 1.74134 1.32616 1.23667 0.88091 0.95121 0.96049 0.89863 0.92653 0.91389 0.93408 0.91927 0.75581 0.85939 0.86684 0.89121 0.87837 0.88090 0.87486 0.90523 0.90423 0.88193 0.90498 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.14 71.98 0.59 -1.55 16 2 C -0.10 -1.89 0.75 -51.17 -0.04 -1.93 16 3 C 0.14 3.82 4.39 86.38 0.38 4.20 16 4 N -0.72 -23.28 4.72 -466.16 -2.20 -25.48 16 5 C 0.57 24.38 7.76 86.73 0.67 25.05 16 6 O -0.61 -29.70 16.32 -3.99 -0.07 -29.77 16 7 C -0.30 -13.58 5.89 -19.93 -0.12 -13.70 16 8 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 9 C -0.20 -9.66 8.64 22.47 0.19 -9.47 16 10 C 0.10 5.31 5.57 -21.28 -0.12 5.19 16 11 C -0.47 -23.87 9.04 23.46 0.21 -23.66 16 12 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 13 C 0.04 1.78 5.14 85.35 0.44 2.22 16 14 N -0.80 -37.76 10.95 21.87 0.24 -37.52 16 15 Si 0.99 34.46 29.60 68.60 2.03 36.49 16 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 17 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 18 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 19 C -0.25 -12.69 9.73 22.47 0.22 -12.47 16 20 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 21 C -0.14 -2.06 6.38 31.61 0.20 -1.86 16 22 C 0.04 0.62 7.63 72.49 0.55 1.17 16 23 O -0.40 -9.73 11.65 -148.98 -1.74 -11.46 16 24 C 0.05 1.00 6.53 72.49 0.47 1.48 16 25 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.05 0.95 6.72 -2.38 -0.02 0.94 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.41 11.35 4.83 -92.71 -0.45 10.90 16 31 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 32 H 0.12 5.69 6.15 -2.91 -0.02 5.67 16 33 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 34 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 36 H 0.11 1.07 7.73 -2.39 -0.02 1.05 16 37 H 0.08 1.21 7.73 -2.39 -0.02 1.19 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.90 7.28 -2.39 -0.02 1.89 16 41 H 0.08 1.42 7.83 -2.39 -0.02 1.40 16 Total: -1.00 -63.50 334.49 2.94 -60.56 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.59 Total: 36.00 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.08 Total: -28.83 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -1.96 Total: -63.00 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.80 Total: -41.23 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Total: -63.50 2.94 -60.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330481959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.005 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds