Wall clock time and date at job start Tue Mar 31 2020 07:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.87250 * 2 1 4 4 N 1.46500 * 109.46825 * 58.99997 * 3 2 1 5 5 C 1.34776 * 120.00176 * 180.02562 * 4 3 2 6 6 O 1.21583 * 119.99952 * 359.97438 * 5 4 3 7 7 C 1.47646 * 120.00054 * 180.02562 * 5 4 3 8 8 C 1.40010 * 119.89233 * 179.97438 * 7 5 4 9 9 C 1.36321 * 120.10724 * 179.97438 * 8 7 5 10 10 C 1.40891 * 119.88794 * 359.97438 * 9 8 7 11 11 C 1.41109 * 120.10217 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99940 * 334.69497 * 11 10 9 13 13 C 1.40225 * 120.00275 * 154.69909 * 11 10 9 14 14 N 1.30653 * 119.99637 * 334.63690 * 13 11 10 15 15 Si 1.86800 * 120.00511 * 154.63860 * 13 11 10 16 16 H 1.48494 * 109.47235 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.46502 * 299.99937 * 15 13 11 18 18 H 1.48495 * 109.46954 * 59.99471 * 15 13 11 19 19 C 1.40885 * 119.79425 * 0.24881 * 10 9 8 20 20 C 1.36317 * 119.89126 * 359.51224 * 19 10 9 21 21 C 1.54100 * 109.87718 * 238.99845 * 2 1 3 22 22 C 1.54812 * 104.18732 * 242.45655 * 21 2 1 23 23 C 1.54995 * 102.09480 * 20.87781 * 22 21 2 24 24 O 1.43746 * 110.00691 * 121.09410 * 2 1 3 25 25 H 1.09003 * 109.47767 * 60.69316 * 1 2 3 26 26 H 1.08997 * 109.47514 * 180.69754 * 1 2 3 27 27 H 1.09003 * 109.47042 * 300.69612 * 1 2 3 28 28 H 1.09000 * 109.47774 * 298.99773 * 3 2 1 29 29 H 1.08997 * 109.47390 * 178.99249 * 3 2 1 30 30 H 0.97003 * 120.00358 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.95213 * 359.97357 * 8 7 5 32 32 H 1.07995 * 120.05592 * 179.97438 * 9 8 7 33 33 H 0.96996 * 119.99912 * 354.19724 * 14 13 11 34 34 H 1.08005 * 120.05613 * 179.72271 * 19 10 9 35 35 H 1.07998 * 119.94458 * 180.20316 * 20 19 10 36 36 H 1.09001 * 110.48876 * 1.13049 * 21 2 1 37 37 H 1.09001 * 110.49362 * 123.78151 * 21 2 1 38 38 H 1.09003 * 110.90688 * 139.07752 * 22 21 2 39 39 H 1.09003 * 110.90854 * 262.64089 * 22 21 2 40 40 H 1.09003 * 110.61279 * 81.47868 * 23 22 21 41 41 H 1.08994 * 110.61980 * 204.47628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 7 1.5470 2.1399 1.1840 5 6 1.8776 3.4293 1.3949 6 8 2.5938 4.0106 0.6028 7 6 1.3711 4.1356 2.5884 8 6 1.7164 5.4750 2.8056 9 6 1.2508 6.1315 3.9058 10 6 0.4203 5.4601 4.8248 11 6 -0.0638 6.1351 5.9655 12 1 0.4811 6.9769 6.3666 13 6 -1.2523 5.7130 6.5783 14 7 -2.1545 5.0733 5.8826 15 14 -1.5458 6.0651 8.3892 16 1 -2.8665 5.5188 8.7920 17 1 -0.4779 5.4236 9.1974 18 1 -1.5258 7.5322 8.6177 19 6 0.0794 4.1110 4.6044 20 6 0.5459 3.4643 3.4987 21 6 2.0539 -0.7464 -1.2422 22 6 2.8356 -1.9494 -0.6603 23 6 2.2334 -2.0703 0.7627 24 8 2.0217 -0.6976 1.1566 25 1 -0.3635 0.5030 -0.8961 26 1 -0.3634 -1.0275 0.0125 27 1 -0.3633 0.5246 0.8837 28 1 1.7051 1.9500 -0.8988 29 1 3.1398 1.4313 0.0181 30 1 0.9752 1.6763 1.8158 31 1 2.3528 5.9889 2.1004 32 1 1.5180 7.1644 4.0727 33 1 -2.0413 4.9641 4.9255 34 1 -0.5533 3.5909 5.3084 35 1 0.2824 2.4311 3.3272 36 1 1.2236 -1.0927 -1.8576 37 1 2.7175 -0.1044 -1.8214 38 1 2.6474 -2.8528 -1.2404 39 1 3.9032 -1.7341 -0.6145 40 1 1.2877 -2.6118 0.7345 41 1 2.9367 -2.5591 1.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330485439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:35 Heat of formation + Delta-G solvation = -101.542827 kcal Electronic energy + Delta-G solvation = -22540.559723 eV Core-core repulsion = 19190.312013 eV Total energy + Delta-G solvation = -3350.247710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28380 -40.43815 -39.09803 -35.96275 -35.88268 -33.43833 -32.52190 -31.59012 -31.30124 -28.40003 -27.49969 -26.15032 -23.76267 -22.92469 -22.62971 -21.34453 -21.10335 -19.98164 -18.78494 -17.49905 -16.79403 -16.73907 -16.49680 -16.35927 -15.85592 -15.58212 -15.41352 -15.30599 -14.80275 -14.37287 -14.26491 -14.01770 -13.89761 -13.63565 -13.43191 -13.18162 -12.91174 -12.76256 -12.65814 -12.61432 -12.04443 -11.98270 -11.93626 -11.64616 -11.59020 -11.56138 -10.98909 -10.79700 -10.66798 -10.13346 -9.82561 -9.61155 -9.31536 -6.62396 0.33892 0.94629 1.51406 1.54967 1.82157 2.07809 2.28871 2.30560 2.70472 2.86091 3.48183 3.49909 3.70029 3.79512 4.03845 4.10975 4.15412 4.18049 4.28141 4.37088 4.51846 4.60151 4.66181 4.72578 4.78950 4.83160 4.90697 4.93453 4.94123 5.04039 5.06795 5.19097 5.24799 5.30634 5.46921 5.58350 5.65793 5.65888 5.81213 5.99135 6.06710 6.21458 6.59801 6.65699 6.74767 7.36138 7.86910 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.003401 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.218971 B = 8230.768525 C = 8960.265495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 C 0.130 3.870 4 N -0.719 5.719 5 C 0.570 3.430 6 O -0.606 6.606 7 C -0.300 4.300 8 C -0.024 4.024 9 C -0.252 4.252 10 C 0.086 3.914 11 C -0.523 4.523 12 H 0.083 0.917 13 C 0.005 3.995 14 N -0.790 5.790 15 Si 1.119 2.881 16 H -0.268 1.268 17 H -0.262 1.262 18 H -0.256 1.256 19 C -0.244 4.244 20 C -0.033 4.033 21 C -0.141 4.141 22 C -0.149 4.149 23 C 0.037 3.963 24 O -0.393 6.393 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.406 0.594 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.290 0.710 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -14.773 -8.565 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 C 0.007 3.993 4 N -0.370 5.370 5 C 0.363 3.637 6 O -0.491 6.491 7 C -0.304 4.304 8 C -0.043 4.043 9 C -0.271 4.271 10 C 0.083 3.917 11 C -0.549 4.549 12 H 0.102 0.898 13 C -0.214 4.214 14 N -0.411 5.411 15 Si 0.935 3.065 16 H -0.193 1.193 17 H -0.186 1.186 18 H -0.180 1.180 19 C -0.264 4.264 20 C -0.052 4.052 21 C -0.179 4.179 22 C -0.186 4.186 23 C -0.039 4.039 24 O -0.313 6.313 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.653 -14.601 -7.756 16.616 hybrid contribution 0.917 0.284 -1.273 1.594 sum 2.569 -14.317 -9.029 17.120 Atomic orbital electron populations 1.22259 0.93521 1.03430 1.02861 1.22406 0.94651 0.90594 0.87160 1.21579 0.98650 0.90844 0.88265 1.45726 1.53098 1.11234 1.26986 1.18370 0.78819 0.81611 0.84852 1.90606 1.41111 1.68225 1.49128 1.19162 1.13925 0.96648 1.00696 1.20546 0.95023 0.93241 0.95488 1.20822 1.09355 0.99498 0.97445 1.18141 0.90301 0.92000 0.91281 1.21105 1.08840 1.15144 1.09828 0.89842 1.28662 0.91179 0.90438 1.11134 1.70499 1.32752 1.26502 1.11349 0.82974 0.77769 0.78634 0.67123 1.19268 1.18646 1.17995 1.20844 1.09708 0.95040 1.00772 1.20645 0.93645 0.98079 0.92854 1.22991 1.01510 0.97171 0.96220 1.23126 1.00372 0.99099 0.96021 1.23780 1.00807 0.83016 0.96306 1.88948 1.86066 1.22431 1.33858 0.90254 0.90311 0.93208 0.90441 0.92671 0.75688 0.87562 0.87628 0.89770 0.88029 0.86119 0.88039 0.89894 0.87718 0.90829 0.90873 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.44 71.98 0.61 -2.51 16 2 C 0.09 1.95 0.82 -10.42 -0.01 1.94 16 3 C 0.13 3.71 4.62 86.38 0.40 4.11 16 4 N -0.72 -24.92 5.13 -466.17 -2.39 -27.31 16 5 C 0.57 24.95 7.76 86.73 0.67 25.62 16 6 O -0.61 -29.59 16.32 -3.98 -0.06 -29.66 16 7 C -0.30 -14.06 5.89 -19.93 -0.12 -14.18 16 8 C -0.02 -1.16 9.52 22.25 0.21 -0.95 16 9 C -0.25 -12.67 9.73 22.47 0.22 -12.46 16 10 C 0.09 4.52 5.30 -21.28 -0.11 4.41 16 11 C -0.52 -26.82 8.98 23.46 0.21 -26.61 16 12 H 0.08 4.13 7.96 -2.91 -0.02 4.11 16 13 C 0.01 0.26 4.94 85.35 0.42 0.68 16 14 N -0.79 -39.91 12.30 21.87 0.27 -39.64 16 15 Si 1.12 39.84 30.00 68.60 2.06 41.89 16 16 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 17 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 18 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 19 C -0.24 -12.19 7.89 22.47 0.18 -12.02 16 20 C -0.03 -1.50 9.47 22.25 0.21 -1.29 16 21 C -0.14 -2.06 6.27 31.58 0.20 -1.86 16 22 C -0.15 -1.88 7.15 31.90 0.23 -1.65 16 23 C 0.04 0.59 7.67 72.66 0.56 1.15 16 24 O -0.39 -9.63 10.72 -148.98 -1.60 -11.23 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.12 6.82 -2.39 -0.02 1.10 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.41 13.12 5.22 -92.71 -0.48 12.63 16 31 H 0.11 5.02 7.63 -2.91 -0.02 5.00 16 32 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 33 H 0.29 15.27 6.68 -92.71 -0.62 14.65 16 34 H 0.10 5.14 6.48 -2.91 -0.02 5.13 16 35 H 0.12 4.59 6.37 -2.91 -0.02 4.57 16 36 H 0.10 1.08 7.70 -2.39 -0.02 1.06 16 37 H 0.08 1.21 7.70 -2.39 -0.02 1.19 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.98 336.00 2.85 -61.13 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: 0.70 Total: 40.41 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.88 Total: -35.61 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -2.12 Total: -66.95 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.66 Total: -40.88 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.06 Total: 41.89 kcal Total: -63.98 2.85 -61.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330485439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.410 kcal (2) G-P(sol) polarization free energy of solvation -63.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds