Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35898 * 117.00481 * 2 1 4 4 C 1.38750 * 120.05255 * 4.99933 * 3 2 1 5 5 C 1.38125 * 119.94549 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97557 * 180.02562 * 5 4 3 7 7 C 1.50703 * 115.55076 * 330.46631 * 6 5 4 8 8 O 1.21295 * 119.99966 * 99.64727 * 7 6 5 9 9 N 1.34775 * 120.00075 * 279.65344 * 7 6 5 10 10 C 1.46498 * 119.99993 * 5.47462 * 9 7 6 11 11 C 1.37095 * 119.99910 * 185.47817 * 9 7 6 12 12 H 1.08001 * 120.00418 * 5.67518 * 11 9 7 13 13 C 1.38961 * 120.00204 * 185.40253 * 11 9 7 14 14 N 1.31412 * 119.99426 * 355.20252 * 13 11 9 15 15 Si 1.86796 * 120.00268 * 175.20233 * 13 11 9 16 16 H 1.48500 * 109.47203 * 89.99853 * 15 13 11 17 17 H 1.48498 * 109.47134 * 209.99978 * 15 13 11 18 18 H 1.48501 * 109.46944 * 330.00069 * 15 13 11 19 19 C 1.53001 * 117.52176 * 116.16863 * 6 5 4 20 20 C 1.52997 * 60.00018 * 107.48461 * 19 6 5 21 21 C 1.38295 * 120.05225 * 0.27523 * 5 4 3 22 22 C 1.38245 * 120.11161 * 359.45038 * 21 5 4 23 23 C 1.38165 * 120.05364 * 0.54935 * 22 21 5 24 24 C 1.50696 * 120.02659 * 179.70379 * 23 22 21 25 25 H 1.09000 * 109.47441 * 184.77996 * 1 2 3 26 26 H 1.09003 * 109.47122 * 304.78369 * 1 2 3 27 27 H 1.09004 * 109.47039 * 64.77905 * 1 2 3 28 28 H 1.07995 * 120.03136 * 0.04176 * 4 3 2 29 29 H 1.09003 * 109.47192 * 235.41955 * 10 9 7 30 30 H 1.09000 * 109.47103 * 355.42374 * 10 9 7 31 31 H 1.09006 * 109.46778 * 115.42314 * 10 9 7 32 32 H 0.96997 * 119.99241 * 180.02562 * 14 13 11 33 33 H 1.08993 * 117.50131 * 214.97657 * 19 6 5 34 34 H 1.09005 * 117.49457 * 359.97438 * 19 6 5 35 35 H 1.09004 * 117.50080 * 252.51458 * 20 19 6 36 36 H 1.09000 * 117.49970 * 107.49527 * 20 19 6 37 37 H 1.07999 * 119.94337 * 179.70403 * 21 5 4 38 38 H 1.08001 * 119.97023 * 180.29412 * 22 21 5 39 39 H 1.09004 * 109.47399 * 270.02217 * 24 23 22 40 40 H 1.09002 * 109.47380 * 30.01850 * 24 23 22 41 41 H 1.09005 * 109.47533 * 150.02442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2955 2.3731 0.1047 5 6 1.9250 3.6027 0.1039 6 6 1.1106 4.8655 0.2181 7 6 -0.2843 4.7928 -0.3478 8 8 -1.2301 4.6177 0.3911 9 7 -0.4807 4.9223 -1.6748 10 6 0.6677 5.0133 -2.5799 11 6 -1.7552 4.9689 -2.1778 12 1 -2.6004 4.9943 -1.5059 13 6 -1.9595 4.9891 -3.5521 14 7 -0.9318 5.0589 -4.3681 15 14 -3.6949 4.9173 -4.2396 16 1 -4.2250 6.2962 -4.3907 17 1 -3.6752 4.2466 -5.5643 18 1 -4.5642 4.1519 -3.3102 19 6 1.3253 5.7355 1.4582 20 6 1.8528 6.1980 0.0986 21 6 3.3015 3.6759 -0.0068 22 6 4.0519 2.5191 -0.1055 23 6 3.4270 1.2868 -0.1052 24 6 4.2451 0.0264 -0.2195 25 1 -0.3634 -1.0241 0.0856 26 1 -0.3633 0.5863 0.8441 27 1 -0.3633 0.4379 -0.9297 28 1 0.2202 2.3167 0.1869 29 1 0.5886 5.9217 -3.1770 30 1 1.5884 5.0406 -1.9970 31 1 0.6805 4.1452 -3.2390 32 1 -1.0745 5.0734 -5.3275 33 1 0.4578 6.2551 1.8649 34 1 2.0556 5.3942 2.1921 35 1 2.9303 6.1613 -0.0623 36 1 1.3323 7.0221 -0.3893 37 1 3.7914 4.6384 -0.0120 38 1 5.1272 2.5788 -0.1871 39 1 4.3622 -0.2367 -1.2708 40 1 5.2267 0.1886 0.2258 41 1 3.7383 -0.7845 0.3036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331532176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -6.101341 kcal Electronic energy + Delta-G solvation = -23771.493853 eV Core-core repulsion = 20425.384797 eV Total energy + Delta-G solvation = -3346.109056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.32438 -39.00348 -37.24904 -35.77057 -34.61281 -32.22726 -31.47215 -29.92005 -27.47786 -26.75173 -26.28607 -24.83464 -22.90700 -22.23941 -21.67726 -20.75214 -18.67688 -17.23262 -16.83835 -16.37768 -15.68074 -15.52779 -15.41814 -14.74937 -14.32461 -14.10290 -13.86084 -13.51503 -13.38991 -13.30104 -12.98056 -12.24681 -12.12051 -11.98833 -11.83431 -11.70836 -11.40764 -11.32758 -11.06958 -10.98138 -10.86665 -10.76859 -10.72649 -10.39857 -10.29618 -10.06081 -9.79680 -9.03554 -8.41515 -8.29564 -7.86346 -7.77526 -6.25083 -3.82342 1.55585 1.70738 3.12870 3.22108 3.28068 3.50176 3.78572 3.85791 4.06365 4.34349 4.77754 4.83635 5.04792 5.12448 5.18926 5.29916 5.35403 5.40652 5.46583 5.48673 5.57484 5.69392 5.77404 5.80769 5.81996 5.89170 5.96176 6.02677 6.21277 6.23059 6.40065 6.47725 6.55373 6.65579 6.70338 6.93207 7.04431 7.17009 7.45323 7.54496 7.61959 8.05937 8.48079 9.17117 9.44695 9.99133 10.67955 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.005860 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.730985 B = 4776.718438 C = 5488.355432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.183 4.183 5 C 0.009 3.991 6 C -0.100 4.100 7 C 0.472 3.528 8 O -0.595 6.595 9 N -0.435 5.435 10 C 0.117 3.883 11 C -0.302 4.302 12 H 0.103 0.897 13 C 0.028 3.972 14 N -0.884 5.884 15 Si 0.930 3.070 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.270 1.270 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.084 4.084 23 C -0.130 4.130 24 C -0.099 4.099 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 -4.900 5.586 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.202 4.202 5 C 0.008 3.992 6 C -0.103 4.103 7 C 0.259 3.741 8 O -0.481 6.481 9 N -0.152 5.152 10 C -0.026 4.026 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.174 4.174 14 N -0.525 5.525 15 Si 0.756 3.244 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.179 4.179 20 C -0.200 4.200 21 C -0.173 4.173 22 C -0.102 4.102 23 C -0.130 4.130 24 C -0.156 4.156 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.806 -5.180 5.672 12.456 hybrid contribution -1.056 0.196 -0.680 1.272 sum 8.749 -4.984 4.992 11.239 Atomic orbital electron populations 1.23075 0.78150 1.03386 1.02342 1.85973 1.21484 1.26854 1.88906 1.18757 0.91670 0.84134 0.97200 1.21185 1.00914 0.91488 1.06609 1.18653 0.92484 0.92069 0.95992 1.20070 0.95764 0.90293 1.04210 1.18648 0.87422 0.85361 0.82710 1.90502 1.42679 1.56132 1.58782 1.43631 1.06926 1.60324 1.04283 1.21782 0.85047 1.03954 0.91858 1.19808 0.84095 1.48048 0.90998 0.87907 1.25330 0.99520 0.96653 0.95940 1.70204 1.29195 1.49388 1.03674 0.85870 0.81783 0.78528 0.78203 1.20314 1.20784 1.19413 1.22971 1.02868 1.01441 0.90571 1.23151 0.99931 0.96616 1.00348 1.20889 0.93042 0.98485 1.04910 1.20715 0.99298 0.90936 0.99295 1.19160 0.90639 0.96076 1.07162 1.20540 0.98351 0.94781 1.01928 0.88529 0.92404 0.92196 0.84834 0.91080 0.95242 0.92045 0.92373 0.88097 0.88595 0.88204 0.88138 0.85793 0.85657 0.91748 0.92086 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.88 101.05 1.00 1.36 16 2 O -0.32 -5.14 9.54 -19.42 -0.19 -5.32 16 3 C 0.13 2.19 6.65 -39.22 -0.26 1.93 16 4 C -0.18 -3.51 8.35 -39.43 -0.33 -3.83 16 5 C 0.01 0.16 4.76 -104.65 -0.50 -0.34 16 6 C -0.10 -1.95 1.20 -156.81 -0.19 -2.14 16 7 C 0.47 11.70 5.59 -10.98 -0.06 11.64 16 8 O -0.59 -16.69 16.61 5.54 0.09 -16.60 16 9 N -0.44 -11.33 3.02 -122.19 -0.37 -11.70 16 10 C 0.12 2.77 8.52 59.85 0.51 3.28 16 11 C -0.30 -8.44 9.55 -14.93 -0.14 -8.58 16 12 H 0.10 3.01 7.20 -52.49 -0.38 2.63 16 13 C 0.03 0.73 5.46 -17.46 -0.10 0.63 16 14 N -0.88 -23.34 9.44 55.50 0.52 -22.82 16 15 Si 0.93 20.81 29.56 -169.99 -5.02 15.78 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C -0.14 -2.34 9.83 -26.73 -0.26 -2.60 16 20 C -0.16 -2.64 8.18 -26.73 -0.22 -2.85 16 21 C -0.16 -2.36 9.35 -39.56 -0.37 -2.73 16 22 C -0.08 -1.17 9.70 -39.61 -0.38 -1.55 16 23 C -0.13 -1.94 5.89 -104.47 -0.62 -2.56 16 24 C -0.10 -1.18 9.79 36.00 0.35 -0.83 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 27 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.13 2.82 5.54 -52.49 -0.29 2.53 16 29 H 0.07 1.76 6.94 -51.93 -0.36 1.40 16 30 H 0.03 0.61 4.81 -51.93 -0.25 0.36 16 31 H 0.06 1.56 7.15 -51.93 -0.37 1.19 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.10 1.33 6.10 -51.93 -0.32 1.01 16 36 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.12 1.60 5.94 -52.49 -0.31 1.29 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -31.26 333.81 -7.05 -38.31 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.55 Total: 6.51 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.57 Total: -9.19 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.15 Total: -34.52 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.09 Total: -21.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.26 -7.05 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331532176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.208 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds