Wall clock time and date at job start Tue Mar 31 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35898 * 117.00481 * 2 1 4 4 C 1.38750 * 120.05255 * 4.99933 * 3 2 1 5 5 C 1.38125 * 119.94549 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97557 * 180.02562 * 5 4 3 7 7 C 1.50703 * 115.55076 * 330.46631 * 6 5 4 8 8 O 1.21295 * 119.99966 * 99.64727 * 7 6 5 9 9 N 1.34775 * 120.00075 * 279.65344 * 7 6 5 10 10 C 1.46498 * 119.99993 * 5.47462 * 9 7 6 11 11 C 1.37095 * 119.99910 * 185.47817 * 9 7 6 12 12 H 1.08001 * 120.00418 * 5.67518 * 11 9 7 13 13 C 1.38961 * 120.00204 * 185.40253 * 11 9 7 14 14 N 1.31412 * 119.99426 * 355.20252 * 13 11 9 15 15 Si 1.86796 * 120.00268 * 175.20233 * 13 11 9 16 16 H 1.48500 * 109.47203 * 89.99853 * 15 13 11 17 17 H 1.48498 * 109.47134 * 209.99978 * 15 13 11 18 18 H 1.48501 * 109.46944 * 330.00069 * 15 13 11 19 19 C 1.53001 * 117.52176 * 116.16863 * 6 5 4 20 20 C 1.52997 * 60.00018 * 107.48461 * 19 6 5 21 21 C 1.38295 * 120.05225 * 0.27523 * 5 4 3 22 22 C 1.38245 * 120.11161 * 359.45038 * 21 5 4 23 23 C 1.38165 * 120.05364 * 0.54935 * 22 21 5 24 24 C 1.50696 * 120.02659 * 179.70379 * 23 22 21 25 25 H 1.09000 * 109.47441 * 184.77996 * 1 2 3 26 26 H 1.09003 * 109.47122 * 304.78369 * 1 2 3 27 27 H 1.09004 * 109.47039 * 64.77905 * 1 2 3 28 28 H 1.07995 * 120.03136 * 0.04176 * 4 3 2 29 29 H 1.09003 * 109.47192 * 235.41955 * 10 9 7 30 30 H 1.09000 * 109.47103 * 355.42374 * 10 9 7 31 31 H 1.09006 * 109.46778 * 115.42314 * 10 9 7 32 32 H 0.96997 * 119.99241 * 180.02562 * 14 13 11 33 33 H 1.08993 * 117.50131 * 214.97657 * 19 6 5 34 34 H 1.09005 * 117.49457 * 359.97438 * 19 6 5 35 35 H 1.09004 * 117.50080 * 252.51458 * 20 19 6 36 36 H 1.09000 * 117.49970 * 107.49527 * 20 19 6 37 37 H 1.07999 * 119.94337 * 179.70403 * 21 5 4 38 38 H 1.08001 * 119.97023 * 180.29412 * 22 21 5 39 39 H 1.09004 * 109.47399 * 270.02217 * 24 23 22 40 40 H 1.09002 * 109.47380 * 30.01850 * 24 23 22 41 41 H 1.09005 * 109.47533 * 150.02442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2955 2.3731 0.1047 5 6 1.9250 3.6027 0.1039 6 6 1.1106 4.8655 0.2181 7 6 -0.2843 4.7928 -0.3478 8 8 -1.2301 4.6177 0.3911 9 7 -0.4807 4.9223 -1.6748 10 6 0.6677 5.0133 -2.5799 11 6 -1.7552 4.9689 -2.1778 12 1 -2.6004 4.9943 -1.5059 13 6 -1.9595 4.9891 -3.5521 14 7 -0.9318 5.0589 -4.3681 15 14 -3.6949 4.9173 -4.2396 16 1 -4.2250 6.2962 -4.3907 17 1 -3.6752 4.2466 -5.5643 18 1 -4.5642 4.1519 -3.3102 19 6 1.3253 5.7355 1.4582 20 6 1.8528 6.1980 0.0986 21 6 3.3015 3.6759 -0.0068 22 6 4.0519 2.5191 -0.1055 23 6 3.4270 1.2868 -0.1052 24 6 4.2451 0.0264 -0.2195 25 1 -0.3634 -1.0241 0.0856 26 1 -0.3633 0.5863 0.8441 27 1 -0.3633 0.4379 -0.9297 28 1 0.2202 2.3167 0.1869 29 1 0.5886 5.9217 -3.1770 30 1 1.5884 5.0406 -1.9970 31 1 0.6805 4.1452 -3.2390 32 1 -1.0745 5.0734 -5.3275 33 1 0.4578 6.2551 1.8649 34 1 2.0556 5.3942 2.1921 35 1 2.9303 6.1613 -0.0623 36 1 1.3323 7.0221 -0.3893 37 1 3.7914 4.6384 -0.0120 38 1 5.1272 2.5788 -0.1871 39 1 4.3622 -0.2367 -1.2708 40 1 5.2267 0.1886 0.2258 41 1 3.7383 -0.7845 0.3036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331532176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:33 Heat of formation + Delta-G solvation = -24.426764 kcal Electronic energy + Delta-G solvation = -23772.288503 eV Core-core repulsion = 20425.384797 eV Total energy + Delta-G solvation = -3346.903706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69763 -40.56605 -38.70788 -37.22691 -36.63441 -33.54003 -33.38572 -31.13067 -28.70766 -28.46417 -27.72659 -26.70261 -24.45260 -23.57487 -22.92782 -22.13225 -20.27861 -19.05951 -18.56121 -17.83318 -17.16856 -16.90138 -16.77863 -16.37262 -15.97375 -15.83602 -15.39001 -14.99725 -14.70323 -14.48148 -14.37359 -13.86059 -13.63025 -13.37483 -13.26812 -13.05882 -12.91022 -12.81324 -12.72056 -12.53160 -12.46507 -12.22507 -12.12942 -12.10452 -12.03029 -11.40512 -11.23023 -11.06824 -10.32948 -9.93163 -9.60302 -8.99430 -8.28964 -5.96213 0.31958 0.48444 1.31472 1.35497 1.48384 1.92795 2.19918 2.31388 2.58103 2.87581 3.06111 3.15409 3.47785 3.85373 3.88399 4.03630 4.06811 4.09693 4.17899 4.22638 4.30659 4.50220 4.59255 4.63387 4.67673 4.70039 4.79260 4.82252 4.90897 4.95276 5.01183 5.17317 5.19059 5.34941 5.38341 5.42757 5.45676 5.56587 5.66305 5.87687 5.99657 6.36728 6.43183 7.10961 7.44521 7.99103 8.61902 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.005860 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.730985 B = 4776.718438 C = 5488.355432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.109 3.891 4 C -0.214 4.214 5 C -0.009 4.009 6 C -0.127 4.127 7 C 0.467 3.533 8 O -0.642 6.642 9 N -0.450 5.450 10 C 0.137 3.863 11 C -0.345 4.345 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.894 5.894 15 Si 0.992 3.008 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.277 1.277 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.072 4.072 23 C -0.132 4.132 24 C -0.097 4.097 25 H 0.133 0.867 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.272 0.728 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 -4.905 5.238 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.009 4.009 6 C -0.130 4.130 7 C 0.256 3.744 8 O -0.531 6.531 9 N -0.167 5.167 10 C -0.006 4.006 11 C -0.472 4.472 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.533 5.533 15 Si 0.815 3.185 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.202 1.202 19 C -0.169 4.169 20 C -0.176 4.176 21 C -0.166 4.166 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.153 4.153 25 H 0.151 0.849 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.174 0.826 38 H 0.188 0.812 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.153 -5.175 5.307 15.097 hybrid contribution -2.087 0.162 -0.540 2.162 sum 11.066 -5.012 4.767 13.050 Atomic orbital electron populations 1.23132 0.77706 1.05169 1.00633 1.85954 1.21935 1.26708 1.88960 1.19058 0.92881 0.83625 0.98048 1.21051 0.99334 0.93374 1.09511 1.18666 0.93921 0.90602 0.97758 1.19904 0.93279 0.92931 1.06869 1.19625 0.89542 0.83193 0.82053 1.90445 1.45233 1.57644 1.59806 1.43842 1.06869 1.60719 1.05241 1.21552 0.85567 1.02039 0.91420 1.19749 0.84678 1.51171 0.91642 0.90753 1.26081 1.03493 0.95390 0.95457 1.70288 1.30618 1.48349 1.04080 0.84959 0.77023 0.78908 0.77602 1.19146 1.19170 1.20224 1.23081 1.02937 0.99878 0.90991 1.23307 1.01697 0.93475 0.99081 1.21204 0.91341 1.00602 1.03477 1.21236 1.01350 0.89630 0.96739 1.19679 0.89727 0.98222 1.05645 1.20603 0.99162 0.92990 1.02585 0.84885 0.93629 0.94466 0.88773 0.92363 0.92053 0.94334 0.91733 0.89868 0.85386 0.83970 0.89320 0.82602 0.81161 0.91065 0.89037 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.88 113.37 1.12 1.98 16 2 O -0.32 -10.58 9.54 -92.40 -0.88 -11.46 16 3 C 0.11 3.75 6.65 22.51 0.15 3.89 16 4 C -0.21 -8.49 8.35 22.37 0.19 -8.31 16 5 C -0.01 -0.31 4.76 -19.88 -0.09 -0.41 16 6 C -0.13 -4.94 1.20 -53.67 -0.06 -5.00 16 7 C 0.47 24.39 5.59 87.66 0.49 24.88 16 8 O -0.64 -38.78 16.61 -3.08 -0.05 -38.83 16 9 N -0.45 -24.60 3.02 -658.87 -1.99 -26.59 16 10 C 0.14 6.60 8.52 127.77 1.09 7.69 16 11 C -0.34 -20.38 9.55 84.04 0.80 -19.58 16 12 H 0.07 4.70 7.20 -2.91 -0.02 4.68 16 13 C 0.00 -0.17 5.46 84.93 0.46 0.30 16 14 N -0.89 -47.80 9.44 21.67 0.20 -47.59 16 15 Si 0.99 43.48 29.56 68.60 2.03 45.51 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.13 -4.20 9.83 30.59 0.30 -3.90 16 20 C -0.14 -4.14 8.18 30.59 0.25 -3.89 16 21 C -0.15 -3.93 9.35 22.29 0.21 -3.72 16 22 C -0.07 -1.66 9.70 22.25 0.22 -1.44 16 23 C -0.13 -3.60 5.89 -19.77 -0.12 -3.72 16 24 C -0.10 -1.97 9.79 71.23 0.70 -1.27 16 25 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 26 H 0.05 1.47 7.14 -2.39 -0.02 1.45 16 27 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 28 H 0.09 4.40 5.54 -2.91 -0.02 4.38 16 29 H 0.06 2.91 6.94 -2.39 -0.02 2.90 16 30 H 0.06 2.50 4.81 -2.39 -0.01 2.49 16 31 H 0.04 2.00 7.15 -2.38 -0.02 1.98 16 32 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 34 H 0.13 3.24 8.14 -2.38 -0.02 3.22 16 35 H 0.14 3.02 6.10 -2.39 -0.01 3.00 16 36 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.16 3.06 5.94 -2.91 -0.02 3.04 16 38 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.31 8.09 -2.39 -0.02 1.30 16 41 H 0.06 1.31 7.53 -2.38 -0.02 1.30 16 Total: -1.00 -73.75 333.81 6.05 -67.70 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.04 Total: 23.75 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.70 Total: -12.50 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.79 Total: -74.18 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.93 Total: -50.29 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.75 6.05 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331532176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.276 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds