Wall clock time and date at job start Tue Mar 31 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 C 1.50698 * 109.47014 * 240.00048 * 2 1 3 5 5 H 1.08006 * 119.99731 * 239.99818 * 4 2 1 6 6 C 1.37873 * 120.00306 * 60.00145 * 4 2 1 7 7 N 1.31515 * 119.99831 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00228 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47391 * 59.99812 * 8 6 4 10 10 H 1.48493 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46728 * 299.99669 * 8 6 4 12 12 C 1.53002 * 109.47117 * 119.99884 * 2 1 3 13 13 S 1.81402 * 109.47127 * 300.00376 * 12 2 1 14 14 O 1.42100 * 110.54626 * 68.37320 * 13 12 2 15 15 O 1.42101 * 110.53678 * 291.62219 * 13 12 2 16 16 N 1.65597 * 104.45066 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99926 * 64.71997 * 16 13 12 18 18 C 1.53004 * 109.47094 * 165.27799 * 17 16 13 19 19 C 1.53005 * 109.47044 * 179.97438 * 18 17 16 20 20 C 1.53001 * 115.54987 * 34.33250 * 19 18 17 21 21 C 1.52997 * 117.49752 * 248.62099 * 19 18 17 22 22 C 1.52997 * 117.49700 * 180.02562 * 19 18 17 23 23 H 1.09003 * 109.47268 * 300.00141 * 1 2 3 24 24 H 1.08995 * 109.47116 * 60.00100 * 1 2 3 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46571 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47128 * 299.99892 * 3 2 1 28 28 H 1.08994 * 109.46994 * 59.99841 * 3 2 1 29 29 H 0.97008 * 119.99976 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47200 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.47018 * 59.99595 * 12 2 1 32 32 H 0.97001 * 120.00224 * 245.00210 * 16 13 12 33 33 H 1.09007 * 109.47241 * 285.27714 * 17 16 13 34 34 H 1.08995 * 109.47308 * 45.27753 * 17 16 13 35 35 H 1.08994 * 109.46776 * 299.99858 * 18 17 16 36 36 H 1.09002 * 109.46826 * 60.00127 * 18 17 16 37 37 H 1.08995 * 109.47487 * 85.57820 * 20 19 18 38 38 H 1.08997 * 109.47326 * 205.58212 * 20 19 18 39 39 H 1.09006 * 109.46715 * 325.58172 * 20 19 18 40 40 H 1.08993 * 117.50357 * 0.02562 * 21 19 18 41 41 H 1.09001 * 117.49157 * 145.02442 * 21 19 18 42 42 H 1.08999 * 117.49963 * 214.98482 * 22 19 18 43 43 H 1.08998 * 117.49768 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8260 -0.4207 -5.2204 11 1 3.8065 -1.1209 -4.0081 12 6 2.0401 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0480 1.4100 2.8543 16 7 2.0541 -0.7399 3.9937 17 6 3.5029 -0.8011 4.2018 18 6 3.7944 -1.3420 5.6031 19 6 5.3076 -1.4065 5.8203 20 6 6.1189 -0.2983 5.1459 21 6 5.9487 -2.7922 5.9185 22 6 5.8060 -1.9254 7.1705 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7082 1.1608 -3.4845 30 1 3.1300 -0.7216 1.2491 31 1 1.6767 -1.7489 1.2493 32 1 1.4575 -1.2146 4.5934 33 1 3.9494 -1.4607 3.4576 34 1 3.9268 0.1981 4.1027 35 1 3.3480 -0.6824 6.3472 36 1 3.3706 -2.3413 5.7022 37 1 6.1491 0.5765 5.7954 38 1 7.1341 -0.6508 4.9636 39 1 5.6513 -0.0311 4.1982 40 1 5.2927 -3.6578 5.8279 41 1 6.9488 -2.9145 5.5024 42 1 6.7119 -1.4774 7.5786 43 1 5.0558 -2.2205 7.9042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331800305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:55 Heat of formation + Delta-G solvation = -62.764935 kcal Electronic energy + Delta-G solvation = -22111.206490 eV Core-core repulsion = 18898.084267 eV Total energy + Delta-G solvation = -3213.122223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.79809 -36.52184 -36.25904 -35.38796 -35.12301 -31.65797 -30.06403 -28.03843 -26.60314 -25.70278 -25.22108 -23.46304 -22.60149 -19.73095 -19.14433 -18.58428 -17.21551 -16.23937 -15.93819 -15.61905 -15.36491 -14.94943 -14.72074 -14.62378 -13.91511 -13.30605 -13.12070 -12.97268 -12.62261 -12.49456 -12.32840 -12.07327 -11.92358 -11.64884 -11.55536 -11.40223 -11.29723 -11.05695 -11.03690 -10.91937 -10.68965 -10.40589 -10.27179 -10.25711 -10.09929 -9.82025 -9.64185 -9.59136 -9.21242 -8.66376 -8.39243 -6.02640 -4.14726 0.89636 3.23239 3.27259 3.32833 3.34335 3.51062 4.29759 4.38074 4.45464 4.50489 4.67918 4.76327 4.83413 5.10002 5.17795 5.22615 5.37650 5.41348 5.45000 5.61424 5.65930 5.68688 5.72380 5.81268 5.87989 5.89775 5.96664 6.11286 6.15724 6.39351 6.71639 6.80993 6.92168 7.03866 7.16512 7.32756 7.51717 7.68354 7.99176 8.10496 8.33913 8.83476 9.50594 10.98623 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.004288 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.538323 B = 6528.504550 C = 7308.268873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.595 3.405 14 O -0.966 6.966 15 O -0.965 6.965 16 N -1.132 6.132 17 C 0.114 3.886 18 C -0.087 4.087 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.175 4.175 22 C -0.176 4.176 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.410 0.590 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 -5.390 15.602 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.957 6.957 15 O -0.955 6.955 16 N -0.889 5.889 17 C -0.013 4.013 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.185 4.185 21 C -0.212 4.212 22 C -0.213 4.213 23 H 0.046 0.954 24 H 0.113 0.887 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.243 0.757 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.426 -4.376 15.458 17.698 hybrid contribution 0.532 -1.383 -0.831 1.699 sum 7.958 -5.759 14.627 17.619 Atomic orbital electron populations 1.22274 0.96925 1.00612 1.02318 1.17928 0.92827 0.92221 0.89071 1.22269 0.99678 0.97797 1.02352 1.20907 1.31769 1.12081 0.89435 0.92387 1.24935 0.94895 0.94979 0.98908 1.69796 1.36227 1.22590 1.23565 0.86597 0.79136 0.79711 0.82172 1.20298 1.21187 1.20277 1.30521 1.11211 1.12872 1.16981 1.05558 0.74339 0.75246 0.75614 1.93550 1.29584 1.86716 1.85803 1.93534 1.78139 1.38243 1.85538 1.55865 1.14166 1.71218 1.47681 1.21408 0.80068 1.02175 0.97609 1.21285 0.92923 1.01819 0.96590 1.21436 0.94745 0.96031 1.00374 1.21534 0.98982 0.96941 1.01005 1.23180 1.02178 0.93960 1.01897 1.23018 1.03061 1.04249 0.90995 0.95365 0.88652 0.94501 0.94503 0.88685 0.95295 0.92696 0.86509 0.86314 0.75729 0.91682 0.89782 0.90720 0.91079 0.91955 0.92344 0.90891 0.88799 0.88791 0.88838 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 4 C -0.50 -13.19 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.15 9.35 55.43 0.52 -23.64 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.58 -11.31 5.00 37.16 0.19 -11.12 16 13 S 2.59 47.89 4.49 -107.50 -0.48 47.40 16 14 O -0.97 -20.33 15.70 -57.54 -0.90 -21.23 16 15 O -0.96 -20.20 15.13 -57.54 -0.87 -21.07 16 16 N -1.13 -15.24 5.89 -10.61 -0.06 -15.30 16 17 C 0.11 1.33 5.13 -4.04 -0.02 1.31 16 18 C -0.09 -0.82 5.54 -26.73 -0.15 -0.97 16 19 C -0.13 -1.10 2.47 -154.51 -0.38 -1.48 16 20 C -0.13 -1.14 9.49 37.16 0.35 -0.78 16 21 C -0.18 -1.39 9.82 -26.76 -0.26 -1.65 16 22 C -0.18 -1.35 9.97 -26.76 -0.27 -1.62 16 23 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 24 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 28 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 31 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 32 H 0.41 4.64 8.62 -34.47 -0.30 4.34 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.47 7.90 -51.93 -0.41 0.05 16 39 H 0.07 0.69 5.59 -51.93 -0.29 0.40 16 40 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -31.26 342.58 -9.17 -40.43 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.10 Total: 6.38 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: -0.41 Total: -33.74 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.46 Total: -38.93 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.77 Total: -42.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 47.89 SS G_CDS: -0.48 Total: 47.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.26 -9.17 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331800305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds