Wall clock time and date at job start Tue Mar 31 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 C 1.50698 * 109.47014 * 240.00048 * 2 1 3 5 5 H 1.08006 * 119.99731 * 239.99818 * 4 2 1 6 6 C 1.37873 * 120.00306 * 60.00145 * 4 2 1 7 7 N 1.31515 * 119.99831 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00228 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47391 * 59.99812 * 8 6 4 10 10 H 1.48493 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46728 * 299.99669 * 8 6 4 12 12 C 1.53002 * 109.47117 * 119.99884 * 2 1 3 13 13 S 1.81402 * 109.47127 * 300.00376 * 12 2 1 14 14 O 1.42100 * 110.54626 * 68.37320 * 13 12 2 15 15 O 1.42101 * 110.53678 * 291.62219 * 13 12 2 16 16 N 1.65597 * 104.45066 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99926 * 64.71997 * 16 13 12 18 18 C 1.53004 * 109.47094 * 165.27799 * 17 16 13 19 19 C 1.53005 * 109.47044 * 179.97438 * 18 17 16 20 20 C 1.53001 * 115.54987 * 34.33250 * 19 18 17 21 21 C 1.52997 * 117.49752 * 248.62099 * 19 18 17 22 22 C 1.52997 * 117.49700 * 180.02562 * 19 18 17 23 23 H 1.09003 * 109.47268 * 300.00141 * 1 2 3 24 24 H 1.08995 * 109.47116 * 60.00100 * 1 2 3 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46571 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47128 * 299.99892 * 3 2 1 28 28 H 1.08994 * 109.46994 * 59.99841 * 3 2 1 29 29 H 0.97008 * 119.99976 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47200 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.47018 * 59.99595 * 12 2 1 32 32 H 0.97001 * 120.00224 * 245.00210 * 16 13 12 33 33 H 1.09007 * 109.47241 * 285.27714 * 17 16 13 34 34 H 1.08995 * 109.47308 * 45.27753 * 17 16 13 35 35 H 1.08994 * 109.46776 * 299.99858 * 18 17 16 36 36 H 1.09002 * 109.46826 * 60.00127 * 18 17 16 37 37 H 1.08995 * 109.47487 * 85.57820 * 20 19 18 38 38 H 1.08997 * 109.47326 * 205.58212 * 20 19 18 39 39 H 1.09006 * 109.46715 * 325.58172 * 20 19 18 40 40 H 1.08993 * 117.50357 * 0.02562 * 21 19 18 41 41 H 1.09001 * 117.49157 * 145.02442 * 21 19 18 42 42 H 1.08999 * 117.49963 * 214.98482 * 22 19 18 43 43 H 1.08998 * 117.49768 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8260 -0.4207 -5.2204 11 1 3.8065 -1.1209 -4.0081 12 6 2.0401 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0480 1.4100 2.8543 16 7 2.0541 -0.7399 3.9937 17 6 3.5029 -0.8011 4.2018 18 6 3.7944 -1.3420 5.6031 19 6 5.3076 -1.4065 5.8203 20 6 6.1189 -0.2983 5.1459 21 6 5.9487 -2.7922 5.9185 22 6 5.8060 -1.9254 7.1705 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7082 1.1608 -3.4845 30 1 3.1300 -0.7216 1.2491 31 1 1.6767 -1.7489 1.2493 32 1 1.4575 -1.2146 4.5934 33 1 3.9494 -1.4607 3.4576 34 1 3.9268 0.1981 4.1027 35 1 3.3480 -0.6824 6.3472 36 1 3.3706 -2.3413 5.7022 37 1 6.1491 0.5765 5.7954 38 1 7.1341 -0.6508 4.9636 39 1 5.6513 -0.0311 4.1982 40 1 5.2927 -3.6578 5.8279 41 1 6.9488 -2.9145 5.5024 42 1 6.7119 -1.4774 7.5786 43 1 5.0558 -2.2205 7.9042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331800305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:54 Heat of formation + Delta-G solvation = -82.642804 kcal Electronic energy + Delta-G solvation = -22112.068459 eV Core-core repulsion = 18898.084267 eV Total energy + Delta-G solvation = -3213.984192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.47441 -38.11553 -38.08473 -36.89270 -36.22463 -33.62200 -30.90047 -28.77944 -28.26627 -27.67844 -27.23729 -24.34006 -23.18464 -21.40186 -20.39791 -19.64953 -18.65081 -17.84212 -17.39856 -16.94101 -16.63285 -16.22409 -15.98697 -15.81236 -14.93842 -14.72496 -14.65803 -14.40997 -13.97202 -13.80030 -13.71024 -13.18929 -13.02251 -13.01426 -12.85730 -12.79738 -12.70500 -12.56106 -12.45886 -12.19716 -12.15193 -12.14817 -11.99163 -11.88962 -11.55181 -11.36236 -10.93704 -10.67513 -10.46736 -10.40057 -10.24105 -8.01875 -6.20626 -0.58271 1.46227 1.46522 1.53788 1.92877 2.45157 2.86318 2.90449 3.20315 3.34489 3.74811 3.81752 3.99802 4.07540 4.11993 4.20380 4.30134 4.41761 4.58659 4.62669 4.66112 4.85710 4.87791 4.88344 4.92533 5.00362 5.01445 5.09809 5.10792 5.16246 5.22417 5.28987 5.34253 5.40000 5.46873 5.52200 5.65439 5.98688 6.12452 6.16737 6.35277 6.83985 7.47669 8.97771 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.004288 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.538323 B = 6528.504550 C = 7308.268873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.614 3.386 14 O -0.994 6.994 15 O -0.992 6.992 16 N -1.115 6.115 17 C 0.103 3.897 18 C -0.082 4.082 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.174 4.174 22 C -0.171 4.171 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.423 0.577 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -7.062 16.713 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.712 3.288 14 O -0.984 6.984 15 O -0.981 6.981 16 N -0.876 5.876 17 C -0.022 4.022 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.188 4.188 21 C -0.211 4.211 22 C -0.207 4.207 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.259 0.741 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.645 -6.057 16.571 19.648 hybrid contribution 0.182 -0.864 -1.106 1.415 sum 8.828 -6.921 15.465 19.105 Atomic orbital electron populations 1.22209 0.97813 1.00451 1.01316 1.17930 0.92310 0.92203 0.90944 1.22195 0.99833 0.98331 1.01326 1.21272 1.31697 1.12313 0.90408 0.91846 1.25678 0.95183 0.95647 1.01674 1.69944 1.37144 1.23727 1.23877 0.85673 0.78770 0.78703 0.78831 1.19747 1.21392 1.19636 1.30452 1.12566 1.13380 1.15481 1.04661 0.73423 0.74904 0.75845 1.93505 1.31548 1.87099 1.86288 1.93498 1.78466 1.40165 1.86000 1.55379 1.15383 1.70727 1.46101 1.21680 0.78457 1.02374 0.99706 1.21253 0.93557 1.02418 0.94872 1.21423 0.94265 0.96577 1.01601 1.21556 0.99432 0.97219 1.00589 1.23253 1.02383 0.93587 1.01875 1.23086 1.03330 1.03601 0.90730 0.94923 0.91074 0.94157 0.94057 0.91147 0.94847 0.92951 0.84522 0.84484 0.74130 0.90314 0.90641 0.90676 0.89687 0.92000 0.91623 0.91821 0.88269 0.88435 0.88304 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.98 7.78 71.98 0.56 -7.42 16 2 C 0.07 3.28 0.52 -52.92 -0.03 3.25 16 3 C -0.16 -7.88 7.78 71.98 0.56 -7.32 16 4 C -0.52 -26.82 8.01 25.60 0.21 -26.62 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.93 5.15 84.65 0.44 1.36 16 7 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 8 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 C -0.59 -21.82 5.00 71.98 0.36 -21.46 16 13 S 2.61 93.35 4.49 -56.49 -0.25 93.09 16 14 O -0.99 -40.98 15.70 -127.65 -2.00 -42.98 16 15 O -0.99 -40.85 15.13 -127.65 -1.93 -42.79 16 16 N -1.11 -27.61 5.89 -187.48 -1.10 -28.71 16 17 C 0.10 2.18 5.13 86.38 0.44 2.63 16 18 C -0.08 -1.33 5.54 30.60 0.17 -1.16 16 19 C -0.14 -2.11 2.47 -52.18 -0.13 -2.24 16 20 C -0.13 -2.13 9.49 71.98 0.68 -1.45 16 21 C -0.17 -2.31 9.82 30.58 0.30 -2.01 16 22 C -0.17 -2.18 9.97 30.58 0.30 -1.88 16 23 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 24 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 28 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 29 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 30 H 0.14 4.47 8.14 -2.40 -0.02 4.45 16 31 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.42 8.52 8.62 -96.74 -0.83 7.69 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.08 1.76 6.01 -2.39 -0.01 1.75 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.15 7.90 -2.39 -0.02 1.13 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 39 H 0.06 1.14 5.59 -2.38 -0.01 1.12 16 40 H 0.10 1.21 8.05 -2.39 -0.02 1.19 16 41 H 0.10 1.22 8.05 -2.39 -0.02 1.20 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.95 342.58 0.96 -64.99 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.16 Total: 26.90 kcal Atomic # 6 Polarization: -68.17 SS G_CDS: 3.87 Total: -64.31 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -0.90 Total: -78.87 kcal Atomic # 8 Polarization: -81.83 SS G_CDS: -3.94 Total: -85.77 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 93.35 SS G_CDS: -0.25 Total: 93.09 kcal Total: -65.95 0.96 -64.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331800305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.657 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds