Wall clock time and date at job start Tue Mar 31 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35723 * 116.99940 * 2 1 4 4 C 1.39007 * 119.90813 * 89.99241 * 3 2 1 5 5 C 1.50710 * 119.95246 * 359.97438 * 4 3 2 6 6 C 1.37687 * 120.09686 * 180.02562 * 4 3 2 7 7 C 1.39796 * 119.89993 * 359.97438 * 6 4 3 8 8 C 1.47498 * 120.09230 * 180.02562 * 7 6 4 9 9 O 1.21626 * 119.99643 * 328.40999 * 8 7 6 10 10 N 1.34767 * 120.00353 * 148.41318 * 8 7 6 11 11 C 1.36909 * 119.99900 * 6.01597 * 10 8 7 12 12 H 1.07999 * 120.00021 * 308.85222 * 11 10 8 13 13 C 1.39019 * 119.99782 * 128.84875 * 11 10 8 14 14 N 1.31381 * 120.00316 * 342.79609 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 162.78988 * 13 11 10 16 16 H 1.48495 * 109.47496 * 270.00344 * 15 13 11 17 17 H 1.48501 * 109.46880 * 30.00634 * 15 13 11 18 18 H 1.48499 * 109.46937 * 149.99914 * 15 13 11 19 19 C 1.46500 * 120.00154 * 186.02187 * 10 8 7 20 20 C 1.53002 * 117.50071 * 181.64232 * 19 10 8 21 21 C 1.53008 * 117.50100 * 112.98381 * 19 10 8 22 22 C 1.39792 * 119.81916 * 0.28057 * 7 6 4 23 23 C 1.37693 * 119.90229 * 359.46458 * 22 7 6 24 24 C 1.50697 * 119.95645 * 180.25535 * 23 22 7 25 25 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47627 * 300.00388 * 1 2 3 27 27 H 1.09004 * 109.47165 * 60.00725 * 1 2 3 28 28 H 1.08995 * 109.46994 * 270.02146 * 5 4 3 29 29 H 1.08998 * 109.46907 * 30.01642 * 5 4 3 30 30 H 1.08997 * 109.47142 * 150.01681 * 5 4 3 31 31 H 1.07999 * 120.04788 * 180.02562 * 6 4 3 32 32 H 0.97002 * 120.00614 * 175.06886 * 14 13 11 33 33 H 1.09001 * 115.55009 * 327.31274 * 19 10 8 34 34 H 1.09004 * 117.49771 * 0.02562 * 20 19 10 35 35 H 1.08994 * 117.49975 * 145.01972 * 20 19 10 36 36 H 1.08998 * 117.49947 * 214.98234 * 21 19 10 37 37 H 1.09003 * 117.49267 * 359.97438 * 21 19 10 38 38 H 1.07997 * 120.05626 * 179.69797 * 22 7 6 39 39 H 1.09002 * 109.46883 * 270.27821 * 24 23 22 40 40 H 1.08997 * 109.47171 * 30.27701 * 24 23 22 41 41 H 1.09001 * 109.47163 * 150.27617 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 2.3597 1.8269 1.2049 5 6 2.0155 1.1530 2.5083 6 6 2.9843 3.0540 1.2095 7 6 3.3026 3.6784 -0.0001 8 6 3.9722 4.9926 -0.0002 9 8 3.7565 5.7850 0.8970 10 7 4.8229 5.3154 -0.9943 11 6 4.9723 4.4773 -2.0666 12 1 5.1782 3.4291 -1.9080 13 6 4.8591 4.9757 -3.3594 14 7 4.2871 6.1402 -3.5668 15 14 5.5202 3.9899 -4.8017 16 1 6.9364 4.3623 -5.0483 17 1 5.4366 2.5403 -4.4902 18 1 4.7130 4.2831 -6.0132 19 6 5.5879 6.5631 -0.9276 20 6 6.5079 6.8915 -2.1052 21 6 7.1054 6.4536 -0.7656 22 6 2.9797 3.0563 -1.2096 23 6 2.3598 1.8267 -1.2051 24 6 2.0164 1.1524 -2.5083 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.0169 1.4572 2.8219 29 1 2.0410 0.0714 2.3759 30 1 2.7396 1.4431 3.2696 31 1 3.2286 3.5329 2.1461 32 1 4.2715 6.5210 -4.4588 33 1 5.0876 7.3953 -0.4324 34 1 6.5437 6.1795 -2.9297 35 1 6.6132 7.9398 -2.3844 36 1 7.6035 7.2140 -0.1642 37 1 7.5345 5.4532 -0.7083 38 1 3.2195 3.5374 -2.1463 39 1 1.0180 1.4563 -2.8225 40 1 2.7409 1.4423 -3.2693 41 1 2.0421 0.0708 -2.3755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331924844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:06 Heat of formation + Delta-G solvation = -26.142668 kcal Electronic energy + Delta-G solvation = -23716.632697 eV Core-core repulsion = 20369.654584 eV Total energy + Delta-G solvation = -3346.978113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.47527 -40.40512 -38.30168 -37.60541 -35.21235 -34.41764 -33.43520 -31.93121 -28.88578 -27.69161 -27.16395 -26.98296 -24.61325 -23.04613 -22.24272 -21.76893 -21.01522 -18.92019 -18.56532 -18.00887 -17.19928 -16.87468 -16.54921 -16.35889 -15.67596 -15.21003 -15.06169 -14.87806 -14.57369 -14.35096 -14.07248 -13.94349 -13.89301 -13.82525 -13.36116 -13.08511 -12.99591 -12.77520 -12.69638 -12.45737 -12.22871 -12.13149 -12.09803 -12.03040 -11.54037 -11.13255 -10.85240 -10.73504 -10.37669 -9.54254 -9.39793 -9.19532 -8.27425 -6.16599 -0.05126 0.44770 1.41341 1.46965 1.55714 1.91225 2.26444 2.61659 2.78738 2.90087 3.08182 3.38433 3.85461 3.94127 4.05953 4.18846 4.33378 4.37174 4.41822 4.46695 4.52737 4.55848 4.60109 4.72333 4.75140 4.78724 4.79573 4.83604 4.88270 4.96398 5.02368 5.18623 5.25124 5.35353 5.42391 5.47990 5.50942 5.57766 5.68026 5.84157 6.10861 6.38779 6.60248 7.05457 7.47591 7.95484 8.72661 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.006318 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.282256 B = 4430.377334 C = 5671.136545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.340 6.340 3 C 0.105 3.895 4 C -0.121 4.121 5 C -0.100 4.100 6 C -0.081 4.081 7 C -0.125 4.125 8 C 0.508 3.492 9 O -0.634 6.634 10 N -0.413 5.413 11 C -0.358 4.358 12 H 0.086 0.914 13 C 0.031 3.969 14 N -0.871 5.871 15 Si 0.954 3.046 16 H -0.268 1.268 17 H -0.255 1.255 18 H -0.280 1.280 19 C 0.069 3.931 20 C -0.139 4.139 21 C -0.187 4.187 22 C -0.072 4.072 23 C -0.127 4.127 24 C -0.103 4.103 25 H 0.120 0.880 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.274 0.726 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -10.896 1.986 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.257 6.257 3 C 0.061 3.939 4 C -0.121 4.121 5 C -0.157 4.157 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.300 3.700 9 O -0.523 6.523 10 N -0.129 5.129 11 C -0.486 4.486 12 H 0.104 0.896 13 C -0.175 4.175 14 N -0.505 5.505 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.179 1.179 18 H -0.205 1.205 19 C -0.036 4.036 20 C -0.176 4.176 21 C -0.225 4.225 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.159 4.159 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.098 -10.558 2.218 11.541 hybrid contribution 0.267 0.544 -0.759 0.971 sum -3.831 -10.014 1.460 10.821 Atomic orbital electron populations 1.23215 0.77288 1.04798 1.01146 1.85859 1.21405 1.24119 1.94353 1.18528 0.97782 0.86359 0.91273 1.20241 1.01002 0.94207 0.96658 1.20674 1.02402 1.00727 0.91853 1.20985 0.97820 0.94418 0.96776 1.19938 1.02617 0.95192 0.95040 1.18923 0.79859 0.87760 0.83469 1.90560 1.67228 1.53327 1.41156 1.42804 1.33866 1.18274 1.17935 1.19330 1.52190 0.92910 0.84131 0.89625 1.26019 0.94090 0.97138 1.00294 1.70143 1.36825 1.19517 1.23988 0.85536 0.78838 0.79966 0.78023 1.19327 1.17900 1.20482 1.21287 0.88518 0.89403 1.04378 1.23033 1.01248 1.01230 0.92110 1.23382 0.95430 1.02556 1.01144 1.22110 0.93838 0.93661 0.99407 1.20432 1.00956 0.94888 0.96457 1.20669 1.02121 1.00753 0.92384 0.86155 0.93113 0.93462 0.90168 0.90147 0.90819 0.85814 0.91654 0.89712 0.88539 0.88983 0.87287 0.89590 0.83038 0.90334 0.91720 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.13 113.37 1.26 1.81 16 2 O -0.34 -9.18 8.47 -90.46 -0.77 -9.95 16 3 C 0.10 3.42 5.67 22.64 0.13 3.55 16 4 C -0.12 -3.99 5.89 -19.81 -0.12 -4.11 16 5 C -0.10 -2.42 9.78 71.24 0.70 -1.73 16 6 C -0.08 -3.23 9.24 22.52 0.21 -3.02 16 7 C -0.13 -5.79 5.59 -20.08 -0.11 -5.91 16 8 C 0.51 27.17 7.40 86.69 0.64 27.81 16 9 O -0.63 -36.72 16.52 -4.11 -0.07 -36.78 16 10 N -0.41 -21.51 2.72 -616.72 -1.68 -23.19 16 11 C -0.36 -17.73 5.28 84.09 0.44 -17.29 16 12 H 0.09 4.24 6.77 -2.91 -0.02 4.22 16 13 C 0.03 1.48 2.73 84.95 0.23 1.71 16 14 N -0.87 -44.37 11.74 21.68 0.25 -44.11 16 15 Si 0.95 37.20 29.31 68.60 2.01 39.21 16 16 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 19 C 0.07 3.37 5.64 44.99 0.25 3.62 16 20 C -0.14 -5.96 8.39 30.62 0.26 -5.70 16 21 C -0.19 -7.49 10.38 30.62 0.32 -7.17 16 22 C -0.07 -3.08 7.57 22.52 0.17 -2.91 16 23 C -0.13 -4.52 5.89 -19.81 -0.12 -4.64 16 24 C -0.10 -2.96 9.78 71.24 0.70 -2.26 16 25 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.77 7.52 -2.39 -0.02 1.75 16 30 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.12 4.88 7.94 -2.91 -0.02 4.85 16 32 H 0.27 13.12 8.32 -92.71 -0.77 12.35 16 33 H 0.08 4.39 7.77 -2.39 -0.02 4.37 16 34 H 0.10 4.43 4.96 -2.38 -0.01 4.42 16 35 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.15 7.12 5.03 -2.91 -0.01 7.10 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.08 2.09 7.52 -2.39 -0.02 2.07 16 Total: -1.00 -63.02 337.59 5.75 -57.27 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 1.03 Total: 33.78 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.96 Total: -16.22 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.43 Total: -67.30 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.83 Total: -46.73 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.01 Total: 39.21 kcal Total: -63.02 5.75 -57.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331924844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.131 kcal (2) G-P(sol) polarization free energy of solvation -63.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds