Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47265 * 239.99823 * 2 1 3 5 5 H 1.07998 * 120.00056 * 239.99908 * 4 2 1 6 6 C 1.37881 * 120.00096 * 60.00426 * 4 2 1 7 7 N 1.31514 * 119.99899 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00143 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47349 * 119.99631 * 8 6 4 11 11 H 1.48498 * 109.47081 * 239.99879 * 8 6 4 12 12 C 1.52996 * 109.47060 * 119.99749 * 2 1 3 13 13 S 1.81399 * 109.47218 * 300.00274 * 12 2 1 14 14 O 1.42101 * 110.54272 * 291.62572 * 13 12 2 15 15 O 1.42102 * 110.54259 * 68.37729 * 13 12 2 16 16 N 1.65600 * 104.45301 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99871 * 64.99838 * 16 13 12 18 18 C 1.52998 * 109.47172 * 165.00356 * 17 16 13 19 19 C 1.52990 * 112.84997 * 48.80287 * 18 17 16 20 20 C 1.53784 * 113.60929 * 277.49709 * 18 17 16 21 21 C 1.53789 * 87.07799 * 220.01886 * 20 18 17 22 22 C 1.53782 * 87.08124 * 25.43451 * 21 20 18 23 23 H 1.08992 * 109.47428 * 299.99990 * 1 2 3 24 24 H 1.09007 * 109.46764 * 60.00501 * 1 2 3 25 25 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47323 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47194 * 299.99844 * 3 2 1 28 28 H 1.09002 * 109.47017 * 59.99753 * 3 2 1 29 29 H 0.97002 * 120.00322 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47469 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47079 * 60.00076 * 12 2 1 32 32 H 0.97002 * 120.00444 * 245.00380 * 16 13 12 33 33 H 1.08997 * 109.47025 * 285.00903 * 17 16 13 34 34 H 1.08997 * 109.46718 * 44.99833 * 17 16 13 35 35 H 1.09006 * 109.47256 * 69.66962 * 19 18 17 36 36 H 1.08999 * 109.47202 * 189.66725 * 19 18 17 37 37 H 1.09000 * 109.47735 * 309.66655 * 19 18 17 38 38 H 1.08997 * 113.61893 * 334.56384 * 20 18 17 39 39 H 1.08997 * 113.61040 * 105.47367 * 20 18 17 40 40 H 1.09003 * 113.61444 * 270.88475 * 21 20 18 41 41 H 1.09002 * 113.68928 * 139.99270 * 21 20 18 42 42 H 1.08990 * 113.61368 * 220.01774 * 22 21 20 43 43 H 1.09000 * 113.61194 * 89.11365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1485 -2.2856 -3.6037 10 1 1.1681 -1.5867 -4.8165 11 1 3.1475 -0.1858 -4.8160 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7303 14 8 2.0478 1.4101 2.8543 15 8 0.0279 -0.0183 2.8543 16 7 2.0528 -0.7407 3.9937 17 6 3.5013 -0.7980 4.2061 18 6 3.7901 -1.3344 5.6095 19 6 3.0073 -2.6089 5.9311 20 6 3.7037 -0.2622 6.7086 21 6 4.9387 -0.9244 7.3420 22 6 5.2899 -1.4341 5.9343 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.7083 1.1609 -3.4845 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 1.4556 -1.2151 4.5930 33 1 3.9513 -1.4584 3.4649 34 1 3.9231 0.2020 4.1053 35 1 3.3933 -3.4335 5.3317 36 1 3.1180 -2.8461 6.9892 37 1 1.9528 -2.4554 5.7017 38 1 3.8879 0.7495 6.3471 39 1 2.8056 -0.3368 7.3216 40 1 4.6947 -1.7199 8.0462 41 1 5.6610 -0.2124 7.7414 42 1 5.6723 -2.4547 5.9223 43 1 5.9077 -0.7428 5.3611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332035123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -65.221427 kcal Electronic energy + Delta-G solvation = -22459.104676 eV Core-core repulsion = 19245.875932 eV Total energy + Delta-G solvation = -3213.228744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83267 -36.48993 -36.25445 -35.27762 -34.57498 -31.65526 -29.44643 -26.71544 -26.59876 -25.78275 -25.70050 -25.21610 -22.32668 -19.62486 -18.79397 -18.42394 -17.31402 -16.42718 -15.88773 -15.48135 -15.21391 -14.86362 -14.63633 -14.36084 -14.18715 -13.50473 -13.05586 -12.96806 -12.58871 -12.49426 -12.32101 -12.06530 -11.93180 -11.75441 -11.39825 -11.37646 -11.12069 -11.07066 -10.90588 -10.70781 -10.66206 -10.38099 -10.34556 -10.28997 -10.25992 -10.08136 -9.64146 -9.57930 -9.16337 -8.64347 -8.39811 -6.02849 -4.14714 0.91648 3.25132 3.27252 3.33580 3.36175 4.30273 4.31759 4.37903 4.40010 4.51764 4.65650 4.84467 4.95369 5.21161 5.22565 5.36723 5.46492 5.47828 5.60166 5.64915 5.66736 5.72435 5.73926 5.79581 5.86682 5.89805 6.05725 6.21613 6.32494 6.39933 6.71875 6.81281 6.92594 7.04495 7.20108 7.33037 7.51873 7.68638 7.99260 8.10815 8.34018 8.84024 9.50683 10.98476 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.004314 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.247022 B = 6489.377098 C = 6937.314178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.582 4.582 13 S 2.594 3.406 14 O -0.965 6.965 15 O -0.967 6.967 16 N -1.129 6.129 17 C 0.130 3.870 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.130 4.130 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.410 0.590 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -5.415 16.343 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.958 6.958 16 N -0.888 5.888 17 C 0.003 3.997 18 C -0.093 4.093 19 C -0.187 4.187 20 C -0.170 4.170 21 C -0.179 4.179 22 C -0.168 4.168 23 H 0.046 0.954 24 H 0.113 0.887 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.245 0.755 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.032 -4.413 16.205 17.846 hybrid contribution 0.478 -1.267 -0.935 1.646 sum 6.510 -5.680 15.270 17.545 Atomic orbital electron populations 1.22269 0.96923 1.00608 1.02311 1.17936 0.92836 0.92227 0.89134 1.22267 0.99661 0.97810 1.02342 1.20984 1.31596 1.12029 0.89411 0.92288 1.24944 0.94914 0.94987 0.98935 1.69814 1.36368 1.22645 1.23340 0.86483 0.78631 0.79611 0.82934 1.19861 1.20962 1.20960 1.30516 1.11176 1.12859 1.17012 1.05558 0.74354 0.75261 0.75646 1.93532 1.78144 1.38303 1.85554 1.93547 1.29645 1.86732 1.85827 1.55878 1.14180 1.71246 1.47456 1.21263 0.80403 1.01523 0.96467 1.22018 0.96522 0.96519 0.94287 1.21589 0.99875 0.95738 1.01529 1.23049 0.98341 0.98417 0.97168 1.22813 0.98282 1.00335 0.96503 1.22981 0.95071 1.01801 0.96936 0.95360 0.88670 0.94506 0.94522 0.88699 0.95301 0.92820 0.86550 0.86334 0.75533 0.91792 0.90161 0.91891 0.92190 0.92065 0.89593 0.91447 0.90345 0.91495 0.91211 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 4 C -0.50 -13.18 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C -0.58 -11.35 5.01 37.16 0.19 -11.16 16 13 S 2.59 48.12 4.49 -107.50 -0.48 47.64 16 14 O -0.97 -20.31 15.12 -57.54 -0.87 -21.18 16 15 O -0.97 -20.47 15.70 -57.54 -0.90 -21.37 16 16 N -1.13 -15.41 5.76 -10.61 -0.06 -15.47 16 17 C 0.13 1.53 5.61 -4.04 -0.02 1.51 16 18 C -0.09 -0.87 1.14 -153.70 -0.18 -1.05 16 19 C -0.13 -1.09 8.91 37.15 0.33 -0.76 16 20 C -0.13 -1.24 7.21 -25.91 -0.19 -1.43 16 21 C -0.14 -1.10 7.73 -25.91 -0.20 -1.30 16 22 C -0.13 -1.06 7.23 -25.92 -0.19 -1.24 16 23 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 24 H 0.09 2.54 6.07 -51.92 -0.32 2.23 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 28 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 31 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 32 H 0.41 4.88 6.52 -34.48 -0.22 4.65 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.00 7.50 -51.93 -0.39 0.61 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.44 7.34 -51.93 -0.38 0.06 16 37 H 0.06 0.52 6.07 -51.93 -0.32 0.21 16 38 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.54 7.64 -51.93 -0.40 0.15 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -31.31 336.79 -8.95 -40.26 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.08 Total: 5.99 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: -0.13 Total: -32.90 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.46 Total: -39.15 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.77 Total: -42.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -0.48 Total: 47.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.31 -8.95 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332035123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.962 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds